Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008902

Physical Location & Seq

Genomic Coordinates Reverse (-)

35946351 .. 35946851

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G026280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCTCAGCAGGGATAATTCAACCAGATTAAACTCTTTCAGTCGTGTTCACAAATGGACTTCTGATGGTGGCTCTCCAGCTACAAATGAAAATGGGACATCTCGTAAGAGAGAATTATCTGCAGCTGGACAGAAGAAAACCCAAACCAATGTTCTAGTACTTAGAGGCCATACTGGCCCTATCACTGCTCTACATTGTGTAACAAGGAGGGAAGTTTGGGATCTAGTGGGTGACCGTGAAGACGCAGGTTTCTTCATCAGTGGGAGCACAGACTGCACGGTTAAGATCTGGGATCCTAGTTTACCCGTTGATTATGACTTATGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

109

Amino Acids

12.1

Weight (kDa)

7.76

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008902)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150541 RchiOBHm_Chr3g0491251 RchiOBHm_Chr5g0051891
rosa_multiflora	Rmu_co8305513.1_g000001 Rmu_sc0000147.1_g000063
rosa_roxburghii	Rroxscaffold_4G00294790 Rroxscaffold_5G00348390 Rroxscaffold_5G00366660 Rroxscaffold_6G00392110 Rroxscaffold_7G00199170
rosa_rugosa	Rorug04G0059000 Rorug04G0059100 Rorug04G0059100 Rorug04G0059200
rosa_samantha	Rh1AG138900 Rh1CG130900 Rh3AG297800 Rh3CG330800 Rh5AG452800 Rh5BG359300
rosa_wichuraiana	Rw2G039400 Rw3G026280 Rw6G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	236
AclWI	GGATC	3 cut(s)	228, 287, 300
AfaI	GTAC	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	21
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
AluBI	AGCT	2 cut(s)	80, 125
AluI	AGCT	2 cut(s)	80, 125
Alw21I	GWGCWC	1 cut(s)	269
AlwI	GGATC	3 cut(s)	228, 287, 300
AoxI	GGCC	2 cut(s)	166, 175
ApeKI	GCWGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	242
BamHI	GGATCC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	1 cut(s)	59
BfaI	CTAG	3 cut(s)	155, 224, 297
BfmI	CTRYAG	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	236
BglI	GCCNNNNNGGC	1 cut(s)	174
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	1 cut(s)	123
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	124
BmcAI	AGTACT	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	60
Bpu1102I	GCTNAGC	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	259
BshFI	GGCC	2 cut(s)	168, 177
BsiHKAI	GWGCWC	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	168, 177
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp143I	GATC	3 cut(s)	220, 285, 292
Bsp1720I	GCTNAGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	168, 177
BspCNI	CTCAG	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	294
BspMAI	CTGCAG	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	3 cut(s)	228, 287, 300
BsrI	ACTGG	1 cut(s)	178
BssMI	GATC	3 cut(s)	220, 285, 292
Bst4CI	ACNGT	2 cut(s)	236, 280
BstAPI	GCANNNNNTGC	1 cut(s)	273
BstDEI	CTNAG	2 cut(s)	5, 161
BstEII	GGTNACC	1 cut(s)	230
BstKTI	GATC	3 cut(s)	223, 288, 295
BstMBI	GATC	3 cut(s)	220, 285, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 273
BstPI	GGTNACC	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	3 cut(s)	220, 285, 292
BstYI	RGATCY	3 cut(s)	220, 285, 292
BsuRI	GGCC	2 cut(s)	168, 177
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	183, 265
BveI	ACCTGC	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	176
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	158
CviJI	RGCY	5 cut(s)	72, 80, 125, 168, 177
CviKI_1	RGCY	5 cut(s)	72, 80, 125, 168, 177
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	2 cut(s)	5, 161
DpnI	GATC	3 cut(s)	222, 287, 294
DpnII	GATC	3 cut(s)	220, 285, 292
Eco91I	GGTNACC	1 cut(s)	230
EcoO65I	GGTNACC	1 cut(s)	230
FaiI	YATR	3 cut(s)	171, 315, 322
FaqI	GGGAC	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	3 cut(s)	155, 224, 297
GluI	GCNGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	168, 177
HgaI	GACGC	1 cut(s)	251
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	49, 302
Hpy188I	TCNGA	1 cut(s)	64
Hpy8I	GTNNAC	2 cut(s)	49, 302
HpyCH4III	ACNGT	2 cut(s)	236, 280
HpyCH4V	TGCA	2 cut(s)	122, 276
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 273
HpyF3I	CTNAG	2 cut(s)	5, 161
Kzo9I	GATC	3 cut(s)	220, 285, 292
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	6 cut(s)	37, 90, 111, 159, 231, 274
Lsp1109I	GCAGC	1 cut(s)	134
MaeI	CTAG	3 cut(s)	155, 224, 297
MaeIII	GTNAC	2 cut(s)	199, 230
MalI	GATC	3 cut(s)	222, 287, 294
MboI	GATC	3 cut(s)	220, 285, 292
MboII	GAAGA	3 cut(s)	145, 244, 251
MflI	RGATCY	3 cut(s)	220, 285, 292
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	2 cut(s)	16, 113
MnlI	CCTC	2 cut(s)	158, 201
MseI	TTAA	2 cut(s)	29, 282
MspA1I	CMGCKG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	174, 273
NdeII	GATC	3 cut(s)	220, 285, 292
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	124
PspEI	GGTNACC	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	124
PsuI	RGATCY	3 cut(s)	220, 285, 292
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	29, 282
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	3 cut(s)	220, 285, 292
Sau96I	GGNCC	1 cut(s)	176
ScaI	AGTACT	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	3 cut(s)	82, 127, 250
SfcI	CTRYAG	1 cut(s)	120
SfiI	GGCCNNNNNGGCC	1 cut(s)	174
Sse9I	AATT	2 cut(s)	16, 113
SspMI	CTAG	3 cut(s)	155, 224, 297
TaaI	ACNGT	2 cut(s)	236, 280
TasI	AATT	2 cut(s)	16, 113
TatI	WGTACW	1 cut(s)	157
Tru1I	TTAA	2 cut(s)	29, 282
Tru9I	TTAA	2 cut(s)	29, 282
TscAI	CASTG	2 cut(s)	190, 265
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	102, 244
TspRI	CASTG	2 cut(s)	190, 265
XspI	CTAG	3 cut(s)	155, 224, 297
ZrmI	AGTACT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.