Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8305513.1

Orthogroup ID

OG0008902

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 706

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8305513.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 379 bp

agctggacagaagaaaacccaaaccaatgttcgagtacttagaggccatactggtcctatcactgctctacattgtgtaacaaggagggaagtttgggatctagtgggtgaccgtgaagacgcaggtttcttcatcagtgggagcacagactgcacagttaagatctgggatcctagttttcgtggtaacgaacttcgggcaaccctgaaaggacacacaagaaccatccgtgcaataagttcggatcgaggaaaggtggtatctggatcagatgatcaatctgttttagtatgggataagcaaactactcagcttctagaagagttgaaaggccatgatgcacaggttagcttacttatttgcttcttacgttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

125

Amino Acids

13.97

Weight (kDa)

8.94

Isoelectric Point (pI)

17.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008902)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150541 RchiOBHm_Chr3g0491251 RchiOBHm_Chr5g0051891
rosa_multiflora	Rmu_co8305513.1_g000001 Rmu_sc0000147.1_g000063
rosa_roxburghii	Rroxscaffold_4G00294790 Rroxscaffold_5G00348390 Rroxscaffold_5G00366660 Rroxscaffold_6G00392110 Rroxscaffold_7G00199170
rosa_rugosa	Rorug04G0059000 Rorug04G0059100 Rorug04G0059100 Rorug04G0059200
rosa_samantha	Rh1AG138900 Rh1CG130900 Rh3AG297800 Rh3CG330800 Rh5AG452800 Rh5BG359300
rosa_wichuraiana	Rw2G039400 Rw3G026280 Rw6G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AclWI	GGATC	5 cut(s)	106, 165, 178, 253, 275
AfaI	GTAC	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	329
AjuI	GAANNNNNNNTTGG	2 cut(s)	13, 45
AluBI	AGCT	3 cut(s)	3, 314, 352
AluI	AGCT	3 cut(s)	3, 314, 352
Alw21I	GWGCWC	1 cut(s)	147
AlwI	GGATC	5 cut(s)	106, 165, 178, 253, 275
AoxI	GGCC	2 cut(s)	44, 332
AspS9I	GGNCC	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	54
BamHI	GGATCC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	147
BccI	CCATC	1 cut(s)	234
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BclI	TGATCA	1 cut(s)	275
BfaI	CTAG	4 cut(s)	102, 175, 318, 377
BfuAI	ACCTGC	1 cut(s)	114
BglII	AGATCT	1 cut(s)	163
BmcAI	AGTACT	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	172
BmsI	GCATC	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	56
BseGI	GGATG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	56
BsgI	GTGCAG	1 cut(s)	137
BshFI	GGCC	2 cut(s)	46, 334
BsiHKAI	GWGCWC	1 cut(s)	147
BsnI	GGCC	2 cut(s)	46, 334
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	6 cut(s)	98, 163, 170, 245, 267, 275
BspANI	GGCC	2 cut(s)	46, 334
BspCNI	CTCAG	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	114
BspPI	GGATC	5 cut(s)	106, 165, 178, 253, 275
BsrI	ACTGG	1 cut(s)	56
BssMI	GATC	6 cut(s)	98, 163, 170, 245, 267, 275
Bst4CI	ACNGT	2 cut(s)	114, 158
Bst6I	CTCTTC	1 cut(s)	316
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstDEI	CTNAG	2 cut(s)	39, 310
BstEII	GGTNACC	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	6 cut(s)	101, 166, 173, 248, 270, 278
BstMBI	GATC	6 cut(s)	98, 163, 170, 245, 267, 275
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstPI	GGTNACC	1 cut(s)	108
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	3 cut(s)	98, 163, 170
BstYI	RGATCY	3 cut(s)	98, 163, 170
BsuRI	GGCC	2 cut(s)	46, 334
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	2 cut(s)	61, 143
BveI	ACCTGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	54
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	1 cut(s)	336
CviJI	RGCY	5 cut(s)	3, 46, 314, 334, 352
CviKI_1	RGCY	5 cut(s)	3, 46, 314, 334, 352
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	2 cut(s)	39, 310
DpnI	GATC	6 cut(s)	100, 165, 172, 247, 269, 277
DpnII	GATC	6 cut(s)	98, 163, 170, 245, 267, 275
Eam1104I	CTCTTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	54
Eco91I	GGTNACC	1 cut(s)	108
EcoO65I	GGTNACC	1 cut(s)	108
FaeI	CATG	1 cut(s)	339
FaiI	YATR	3 cut(s)	49, 293, 337
FatI	CATG	1 cut(s)	335
FbaI	TGATCA	1 cut(s)	275
FokI	GGATG	1 cut(s)	213
FspBI	CTAG	4 cut(s)	102, 175, 318, 377
HaeIII	GGCC	2 cut(s)	46, 334
HgaI	GACGC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	339
HphI	GGTGA	1 cut(s)	120
Hpy188I	TCNGA	2 cut(s)	245, 272
Hpy188III	TCNNGA	2 cut(s)	265, 318
HpyCH4III	ACNGT	2 cut(s)	114, 158
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	3 cut(s)	154, 234, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	2 cut(s)	39, 310
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	1 cut(s)	339
Ksp22I	TGATCA	1 cut(s)	275
Kzo9I	GATC	6 cut(s)	98, 163, 170, 245, 267, 275
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	6 cut(s)	37, 109, 152, 219, 250, 330
LweI	GCATC	1 cut(s)	329
MaeI	CTAG	4 cut(s)	102, 175, 318, 377
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	4 cut(s)	77, 108, 186, 372
MalI	GATC	6 cut(s)	100, 165, 172, 247, 269, 277
MboI	GATC	6 cut(s)	98, 163, 170, 245, 267, 275
MboII	GAAGA	4 cut(s)	23, 122, 129, 333
MflI	RGATCY	3 cut(s)	98, 163, 170
MhlI	GDGCHC	1 cut(s)	147
MnlI	CCTC	3 cut(s)	36, 79, 243
MseI	TTAA	1 cut(s)	160
MwoI	GCNNNNNNNGC	1 cut(s)	151
NdeII	GATC	6 cut(s)	98, 163, 170, 245, 267, 275
NlaIII	CATG	1 cut(s)	339
NlaIV	GGNNCC	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	108
PspEI	GGTNACC	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	172
PspPI	GGNCC	1 cut(s)	54
PsuI	RGATCY	3 cut(s)	98, 163, 170
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	160
Sau3AI	GATC	6 cut(s)	98, 163, 170, 245, 267, 275
Sau96I	GGNCC	1 cut(s)	54
ScaI	AGTACT	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	6 cut(s)	128, 259, 316, 349, 354, 374
SfaNI	GCATC	1 cut(s)	329
SinI	GGWCC	1 cut(s)	54
SspMI	CTAG	4 cut(s)	102, 175, 318, 377
TaaI	ACNGT	2 cut(s)	114, 158
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	2 cut(s)	32, 248
TatI	WGTACW	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	160
Tru9I	TTAA	1 cut(s)	160
TscAI	CASTG	2 cut(s)	68, 143
TseFI	GTSAC	1 cut(s)	108
Tsp45I	GTSAC	1 cut(s)	108
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	2 cut(s)	68, 143
VpaK11BI	GGWCC	1 cut(s)	54
XbaI	TCTAGA	1 cut(s)	317
XspI	CTAG	4 cut(s)	102, 175, 318, 377
ZrmI	AGTACT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.