Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0008902

Physical Location & Seq

Genomic Coordinates Forward (+)

8582568 .. 8584156

Gene Structure 1589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G005350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCTTGTCCCAGTTGCTGCGTCTCTTTTTCCATGACTGCTTCATTGAGGAGGTCGGCCAACTATGCCTCTTTGGTGACTGATCAGCTATCTTTGGTGGAATTACACATGGCTGGACTAGGACTTCCTGATCTTGATGCATGGTACATGATTGAAACAATAGCTGAGAAGAACAACATTGGATACACACAATTTATAAAGCTGAGGGGGTTATTGTCGCATGTTCAACAACTACGAATTGGTTACTGGGGAATCAGTTCTTTCAAGGCCCAATCCATGTCTCATGGATTAGCATCTCCACGTTCAAAAGATGCTGCAGTTGAGAGTCAGCAACCTGCTGAGGCCTCCGGTGTTGGGAGGAGCTGGGTTCAGAGCATGTTCAGCAGGGATAATTCAACCAGATTAAACTCTTTCAGTCGTGTTTGCAAATGGACTTCTGATGGTGGCTCTCCAGCTACAAATGAAAATGGGACATCTCGTAAGAGAGAATTATCTGCAGCTGGACAGAAGAAAACCCAAACCAATGTTCTAGTACTTAGAGGCCATACTGGCCCTATCACTGCTCTACATTGTGTAACAAGGAGGGAAGTTTGGGATCTAGTGGGTGACCGTGAAGACGCAGGTTTCTTCATCAGTGGGAGCACAGACTGCACGGTTAAGATCTGGGATCCTAGTTTACCCGTTGATTATGACTTATGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

234

Amino Acids

25.71

Weight (kDa)

8.16

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008902)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150541 RchiOBHm_Chr3g0491251 RchiOBHm_Chr5g0051891
rosa_multiflora	Rmu_co8305513.1_g000001 Rmu_sc0000147.1_g000063
rosa_roxburghii	Rroxscaffold_4G00294790 Rroxscaffold_5G00348390 Rroxscaffold_5G00366660 Rroxscaffold_6G00392110 Rroxscaffold_7G00199170
rosa_rugosa	Rorug04G0059000 Rorug04G0059100 Rorug04G0059100 Rorug04G0059200
rosa_samantha	Rh1AG138900 Rh1CG130900 Rh3AG297800 Rh3CG330800 Rh5AG452800 Rh5BG359300
rosa_wichuraiana	Rw2G039400 Rw3G026280 Rw6G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	197
Acc36I	ACCTGC	2 cut(s)	343, 611
AclWI	GGATC	3 cut(s)	603, 662, 675
AcoI	YGGCCR	1 cut(s)	57
AfaI	GTAC	2 cut(s)	146, 534
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	5 cut(s)	155, 227, 265, 306, 396
AjuI	GAANNNNNNNTTGG	2 cut(s)	510, 542
AluBI	AGCT	6 cut(s)	88, 164, 202, 363, 455, 500
AluI	AGCT	6 cut(s)	88, 164, 202, 363, 455, 500
Alw21I	GWGCWC	1 cut(s)	644
Alw26I	GTCTC	2 cut(s)	28, 285
AlwI	GGATC	3 cut(s)	603, 662, 675
AlwNI	CAGNNNCTG	1 cut(s)	18
AoxI	GGCC	5 cut(s)	57, 267, 342, 541, 550
ApeKI	GCWGC	3 cut(s)	18, 314, 497
Asp700I	GAANNNNTTC	1 cut(s)	256
AspS9I	GGNCC	2 cut(s)	268, 551
AsuHPI	GGTGA	2 cut(s)	88, 617
BamHI	GGATCC	1 cut(s)	667
BbsI	GAAGAC	1 cut(s)	621
Bbv12I	GWGCWC	1 cut(s)	644
BbvCI	CCTCAGC	2 cut(s)	203, 339
BbvI	GCAGC	3 cut(s)	5, 301, 509
BccI	CCATC	1 cut(s)	434
BciVI	GTATCC	1 cut(s)	176
BclI	TGATCA	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	28, 285
BfaI	CTAG	4 cut(s)	119, 530, 599, 672
BfmI	CTRYAG	2 cut(s)	315, 495
BfuAI	ACCTGC	2 cut(s)	343, 611
BfuI	GTATCC	1 cut(s)	176
BglI	GCCNNNNNGGC	1 cut(s)	549
BglII	AGATCT	1 cut(s)	660
BisI	GCNGC	3 cut(s)	19, 315, 498
BlsI	GCNGC	3 cut(s)	20, 316, 499
BmcAI	AGTACT	1 cut(s)	534
BmgT120I	GGNCC	2 cut(s)	268, 551
BmiI	GGNNCC	1 cut(s)	669
BmrI	ACTGGG	2 cut(s)	6, 256
BmsI	GCATC	3 cut(s)	127, 301, 302
BmuI	ACTGGG	2 cut(s)	6, 256
BpiI	GAAGAC	1 cut(s)	621
BpmI	CTGGAG	1 cut(s)	435
Bpu10I	CCTNAGC	2 cut(s)	203, 339
BsaBI	GATNNNNATC	1 cut(s)	292
BsaWI	WCCGGW	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse1I	ACTGG	3 cut(s)	12, 251, 553
Bse8I	GATNNNNATC	1 cut(s)	292
BseJI	GATNNNNATC	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMII	CTCAG	3 cut(s)	156, 194, 330
BseNI	ACTGG	3 cut(s)	12, 251, 553
BseRI	GAGGAG	2 cut(s)	64, 373
BseXI	GCAGC	3 cut(s)	5, 301, 509
BseYI	CCCAGC	1 cut(s)	363
BsgI	GTGCAG	1 cut(s)	634
BshFI	GGCC	5 cut(s)	59, 269, 344, 543, 552
BsiHKAI	GWGCWC	1 cut(s)	644
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmAI	GTCTC	2 cut(s)	28, 285
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	5 cut(s)	59, 269, 344, 543, 552
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp143I	GATC	5 cut(s)	82, 130, 595, 660, 667
BspANI	GGCC	5 cut(s)	59, 269, 344, 543, 552
BspCNI	CTCAG	3 cut(s)	157, 195, 331
BspLI	GGNNCC	1 cut(s)	669
BspMAI	CTGCAG	2 cut(s)	319, 499
BspMI	ACCTGC	2 cut(s)	343, 611
BspPI	GGATC	3 cut(s)	603, 662, 675
BsrI	ACTGG	3 cut(s)	12, 251, 553
BssMI	GATC	5 cut(s)	82, 130, 595, 660, 667
Bst4CI	ACNGT	2 cut(s)	611, 655
BstAPI	GCANNNNNTGC	1 cut(s)	648
BstDEI	CTNAG	4 cut(s)	165, 203, 339, 536
BstEII	GGTNACC	1 cut(s)	605
BstKTI	GATC	5 cut(s)	85, 133, 598, 663, 670
BstMAI	GTCTC	2 cut(s)	28, 285
BstMBI	GATC	5 cut(s)	82, 130, 595, 660, 667
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 381, 549, 648
BstNSI	RCATGY	2 cut(s)	224, 379
BstPI	GGTNACC	1 cut(s)	605
BstSFI	CTRYAG	2 cut(s)	315, 495
BstV1I	GCAGC	3 cut(s)	5, 301, 509
BstV2I	GAAGAC	1 cut(s)	621
BstX2I	RGATCY	3 cut(s)	595, 660, 667
BstYI	RGATCY	3 cut(s)	595, 660, 667
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	5 cut(s)	59, 269, 344, 543, 552
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	558, 640
BveI	ACCTGC	2 cut(s)	343, 611
CaiI	CAGNNNCTG	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	268, 551
CseI	GACGC	2 cut(s)	10, 626
Csp6I	GTAC	2 cut(s)	145, 533
CviAII	CATG	8 cut(s)	34, 109, 141, 148, 221, 277, 284, 376
CviQI	GTAC	2 cut(s)	145, 533
DdeI	CTNAG	4 cut(s)	165, 203, 339, 536
DpnI	GATC	5 cut(s)	84, 132, 597, 662, 669
DpnII	GATC	5 cut(s)	82, 130, 595, 660, 667
EaeI	YGGCCR	1 cut(s)	57
Eco147I	AGGCCT	1 cut(s)	344
Eco91I	GGTNACC	1 cut(s)	605
EcoO65I	GGTNACC	1 cut(s)	605
EcoT22I	ATGCAT	1 cut(s)	142
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	8 cut(s)	37, 112, 144, 151, 224, 280, 287, 379
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	8 cut(s)	33, 108, 140, 147, 220, 276, 283, 375
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	3 cut(s)	19, 315, 498
Fsp4HI	GCNGC	3 cut(s)	19, 315, 498
FspBI	CTAG	4 cut(s)	119, 530, 599, 672
GluI	GCNGC	3 cut(s)	19, 315, 498
GsaI	CCCAGC	1 cut(s)	367
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	5 cut(s)	59, 269, 344, 543, 552
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	2 cut(s)	10, 626
Hin1II	CATG	8 cut(s)	37, 112, 144, 151, 224, 280, 287, 379
HinfI	GANTC	2 cut(s)	252, 325
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	2 cut(s)	88, 617
Hpy166II	GTNNAC	1 cut(s)	677
Hpy188I	TCNGA	2 cut(s)	372, 439
Hpy188III	TCNNGA	2 cut(s)	128, 134
Hpy8I	GTNNAC	1 cut(s)	677
HpyCH4III	ACNGT	2 cut(s)	611, 655
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	5 cut(s)	140, 317, 426, 497, 651
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 381, 549, 648
HpyF3I	CTNAG	4 cut(s)	165, 203, 339, 536
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	8 cut(s)	37, 112, 144, 151, 224, 280, 287, 379
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	5 cut(s)	82, 130, 595, 660, 667
LmnI	GCTCC	2 cut(s)	360, 639
Lsp1109I	GCAGC	3 cut(s)	5, 301, 509
LweI	GCATC	3 cut(s)	127, 301, 302
MaeI	CTAG	4 cut(s)	119, 530, 599, 672
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	4 cut(s)	76, 242, 574, 605
MalI	GATC	5 cut(s)	84, 132, 597, 662, 669
MboI	GATC	5 cut(s)	82, 130, 595, 660, 667
MboII	GAAGA	4 cut(s)	181, 520, 619, 626
MflI	RGATCY	3 cut(s)	595, 660, 667
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	5 cut(s)	101, 191, 237, 391, 488
MlyI	GAGTC	1 cut(s)	334
MnlI	CCTC	9 cut(s)	42, 45, 79, 198, 334, 351, 355, 533, 576
Mph1103I	ATGCAT	1 cut(s)	142
MroXI	GAANNNNTTC	1 cut(s)	256
MseI	TTAA	2 cut(s)	404, 657
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	4 cut(s)	65, 381, 549, 648
NdeII	GATC	5 cut(s)	82, 130, 595, 660, 667
NlaIII	CATG	8 cut(s)	37, 112, 144, 151, 224, 280, 287, 379
NlaIV	GGNNCC	1 cut(s)	669
NmuCI	GTSAC	2 cut(s)	76, 605
NsiI	ATGCAT	1 cut(s)	142
NspI	RCATGY	2 cut(s)	224, 379
PceI	AGGCCT	1 cut(s)	344
PdmI	GAANNNNTTC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	252
PkrI	GCNGC	3 cut(s)	20, 316, 499
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
PsiI	TTATAA	1 cut(s)	197
PspEI	GGTNACC	1 cut(s)	605
PspFI	CCCAGC	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	669
PspPI	GGNCC	2 cut(s)	268, 551
PstI	CTGCAG	2 cut(s)	319, 499
PstNI	CAGNNNCTG	1 cut(s)	18
PsuI	RGATCY	3 cut(s)	595, 660, 667
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	2 cut(s)	146, 534
RsaNI	GTAC	2 cut(s)	145, 533
SaqAI	TTAA	2 cut(s)	404, 657
SatI	GCNGC	3 cut(s)	19, 315, 498
Sau3AI	GATC	5 cut(s)	82, 130, 595, 660, 667
Sau96I	GGNCC	2 cut(s)	268, 551
ScaI	AGTACT	1 cut(s)	534
SchI	GAGTC	1 cut(s)	334
SduI	GDGCHC	1 cut(s)	644
SfaNI	GCATC	3 cut(s)	127, 301, 302
SfcI	CTRYAG	2 cut(s)	315, 495
SfiI	GGCCNNNNNGGCC	1 cut(s)	549
Sse9I	AATT	5 cut(s)	101, 191, 237, 391, 488
SseBI	AGGCCT	1 cut(s)	344
SspMI	CTAG	4 cut(s)	119, 530, 599, 672
StuI	AGGCCT	1 cut(s)	344
TaaI	ACNGT	2 cut(s)	611, 655
TaiI	ACGT	1 cut(s)	304
TasI	AATT	5 cut(s)	101, 191, 237, 391, 488
TatI	WGTACW	1 cut(s)	532
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	2 cut(s)	404, 657
Tru9I	TTAA	2 cut(s)	404, 657
TscAI	CASTG	2 cut(s)	565, 640
TseFI	GTSAC	2 cut(s)	76, 605
TseI	GCWGC	3 cut(s)	18, 314, 497
Tsp45I	GTSAC	2 cut(s)	76, 605
TspDTI	ATGAA	3 cut(s)	33, 477, 619
TspRI	CASTG	2 cut(s)	565, 640
XceI	RCATGY	2 cut(s)	224, 379
XmnI	GAANNNNTTC	1 cut(s)	256
XspI	CTAG	4 cut(s)	119, 530, 599, 672
ZrmI	AGTACT	1 cut(s)	534
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.