Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008902

Physical Location & Seq

Genomic Coordinates Forward (+)

9233891 .. 9238064

Gene Structure 4174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0059100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCCTTCCTCGAAGAATTTCATGCCAATCTGGAGTCTCTGCCTAATATTCTGCAAAGGCATTATGCAGTGTTACGTAATCTAGACAAGAGTTTACAAGATATCCAAAGACAGAATGAGCAACGTTGCGAACAAGAAATAGAGGATATAAAGCGCGAGATTAAGTCTGGAAATATTACACCTGATAGTTCACTTATTAGATTCTCAGATGAAGCACTTGATGAGCAAAAGCATAGCATTGGGATTGCTGATGAAAAGGTCATGCTGGCTGTTCGGGCATATGATTTGGTTGATACACACATACAACAGCTTGATCAATATTTGAAAAAAATTGGTGCAGAGCTCCGGCCTGATGGTGTTGCCGCAAGTGCCATGCCTGCTCCAAGTCTTGATGGTGGTGCAAAATCTGGAAGGAGCAGCGAAGGTGGTAGAGGAGGGCGTAAGAAAAAACAGGCAACAGTAGCAGCAACAGCACCAGAAGCTACACCTGCCCCTGCACCTGCAAATCCTACTGGTATGGATTTGGATATACCAGTGGATCCAAATGAGCCAACCTACTGTTTGTGTAACCAAGTTAGCTATGGAGATATGGTTGCATGCGATAACCCCAATTGCAAGATTGAATGGTTCCATTTTGGCTGCGTTGGTTTGAAAGATCAGCCAAAAGGAAAGTGGTATTGTCAAGATTGTTCCGCATTGAGAAATCGACGCAAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

239

Amino Acids

26.53

Weight (kDa)

5.79

Isoelectric Point (pI)

61.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ING	PF12998	3 - 111	2.7e-20	Inhibitor of growth proteins N-terminal histone-binding
PHD-1st_NSD	PF23011	193 - 230	2.3e-06	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008902)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150541 RchiOBHm_Chr3g0491251 RchiOBHm_Chr5g0051891
rosa_multiflora	Rmu_co8305513.1_g000001 Rmu_sc0000147.1_g000063
rosa_roxburghii	Rroxscaffold_4G00294790 Rroxscaffold_5G00348390 Rroxscaffold_5G00366660 Rroxscaffold_6G00392110 Rroxscaffold_7G00199170
rosa_rugosa	Rorug04G0059000 Rorug04G0059100 Rorug04G0059100 Rorug04G0059200
rosa_samantha	Rh1AG138900 Rh1CG130900 Rh3AG297800 Rh3CG330800 Rh5AG452800 Rh5BG359300
rosa_wichuraiana	Rw2G039400 Rw3G026280 Rw6G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	496, 508
Acc36I	ACCTGC	2 cut(s)	496, 508
AccII	CGCG	1 cut(s)	156
AciI	CCGC	2 cut(s)	363, 693
AclI	AACGTT	1 cut(s)	124
AclWI	GGATC	2 cut(s)	533, 546
AcsI	RAATTY	1 cut(s)	17
AgsI	TTSAA	3 cut(s)	325, 623, 652
AluBI	AGCT	4 cut(s)	310, 343, 482, 579
AluI	AGCT	4 cut(s)	310, 343, 482, 579
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	2 cut(s)	533, 546
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	3 cut(s)	417, 464, 639
ApoI	RAATTY	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	156
BamHI	GGATCC	1 cut(s)	538
BanII	GRGCYC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	3 cut(s)	429, 476, 626
BccI	CCATC	2 cut(s)	347, 386
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	83
BfuAI	ACCTGC	2 cut(s)	496, 508
BisI	GCNGC	4 cut(s)	363, 418, 465, 640
BlsI	GCNGC	4 cut(s)	364, 419, 466, 641
BmiI	GGNNCC	2 cut(s)	540, 629
BpmI	CTGGAG	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bse1I	ACTGG	2 cut(s)	517, 533
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	2 cut(s)	517, 533
BseRI	GAGGAG	1 cut(s)	447
BseXI	GCAGC	3 cut(s)	429, 476, 626
BsgI	GTGCAG	2 cut(s)	357, 480
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	349
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	3 cut(s)	313, 538, 655
BspACI	CCGC	2 cut(s)	363, 693
BspANI	GGCC	1 cut(s)	349
BspCNI	CTCAG	1 cut(s)	218
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	540, 629
BspMI	ACCTGC	2 cut(s)	496, 508
BspPI	GGATC	2 cut(s)	533, 546
BsrI	ACTGG	2 cut(s)	517, 533
BssMI	GATC	3 cut(s)	313, 538, 655
Bst4CI	ACNGT	2 cut(s)	460, 560
BstBAI	YACGTR	1 cut(s)	77
BstC8I	GCNNGC	3 cut(s)	267, 378, 598
BstDEI	CTNAG	1 cut(s)	205
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	3 cut(s)	316, 541, 658
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	3 cut(s)	313, 538, 655
BstMWI	GCNNNNNNNGC	7 cut(s)	275, 368, 377, 461, 470, 479, 488
BstNSI	RCATGY	1 cut(s)	600
BstSNI	TACGTA	1 cut(s)	77
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	3 cut(s)	429, 476, 626
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	349
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	2 cut(s)	75, 540
BveI	ACCTGC	2 cut(s)	496, 508
Cac8I	GCNNGC	3 cut(s)	267, 378, 598
CfoI	GCGC	1 cut(s)	156
CviAII	CATG	4 cut(s)	23, 262, 373, 597
CviJI	RGCY	9 cut(s)	269, 310, 343, 349, 482, 550, 579, 639, 661
CviKI_1	RGCY	9 cut(s)	269, 310, 343, 349, 482, 550, 579, 639, 661
DdeI	CTNAG	1 cut(s)	205
DpnI	GATC	3 cut(s)	315, 540, 657
DpnII	GATC	3 cut(s)	313, 538, 655
Ecl136II	GAGCTC	1 cut(s)	343
Eco105I	TACGTA	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	345
Eco32I	GATATC	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	343
EcoRV	GATATC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	4 cut(s)	26, 265, 376, 600
FatI	CATG	4 cut(s)	22, 261, 372, 596
FauNDI	CATATG	1 cut(s)	280
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	4 cut(s)	363, 418, 465, 640
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	4 cut(s)	363, 418, 465, 640
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	4 cut(s)	363, 418, 465, 640
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	349
HapII	CCGG	1 cut(s)	346
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	4 cut(s)	26, 265, 376, 600
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	35, 201
HpaII	CCGG	1 cut(s)	346
Hpy166II	GTNNAC	2 cut(s)	95, 191
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	6 cut(s)	32, 83, 168, 389, 408, 683
Hpy8I	GTNNAC	2 cut(s)	95, 191
Hpy99I	CGWCG	1 cut(s)	711
HpyAV	CCTTC	3 cut(s)	16, 405, 416
HpyCH4III	ACNGT	2 cut(s)	460, 560
HpyCH4IV	ACGT	2 cut(s)	76, 124
HpyCH4V	TGCA	8 cut(s)	55, 68, 338, 401, 497, 503, 596, 615
HpyF10VI	GCNNNNNNNGC	7 cut(s)	275, 368, 377, 461, 470, 479, 488
HpyF3I	CTNAG	1 cut(s)	205
HpySE526I	ACGT	2 cut(s)	76, 124
Hsp92II	CATG	4 cut(s)	26, 265, 376, 600
HspAI	GCGC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	313, 538, 655
LmnI	GCTCC	3 cut(s)	348, 385, 414
Lsp1109I	GCAGC	3 cut(s)	429, 476, 626
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	2 cut(s)	76, 124
MaeIII	GTNAC	2 cut(s)	72, 566
MalI	GATC	3 cut(s)	315, 540, 657
MboI	GATC	3 cut(s)	313, 538, 655
MboII	GAAGA	1 cut(s)	26
MfeI	CAATTG	1 cut(s)	610
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	3 cut(s)	17, 330, 610
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	4 cut(s)	20, 136, 425, 428
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	1 cut(s)	162
MspI	CCGG	1 cut(s)	346
MunI	CAATTG	1 cut(s)	610
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	7 cut(s)	275, 368, 377, 461, 470, 479, 488
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	3 cut(s)	313, 538, 655
NlaIII	CATG	4 cut(s)	26, 265, 376, 600
NlaIV	GGNNCC	2 cut(s)	540, 629
NspI	RCATGY	1 cut(s)	600
PaeI	GCATGC	1 cut(s)	600
PaqCI	CACCTGC	2 cut(s)	496, 508
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	201
PkrI	GCNGC	4 cut(s)	364, 419, 466, 641
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	345
Psp1406I	AACGTT	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	540, 629
PsuI	RGATCY	1 cut(s)	538
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	4 cut(s)	363, 418, 465, 640
Sau3AI	GATC	3 cut(s)	313, 538, 655
SchI	GAGTC	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	345
SnaBI	TACGTA	1 cut(s)	77
SphI	GCATGC	1 cut(s)	600
Sse9I	AATT	3 cut(s)	17, 330, 610
SsiI	CCGC	2 cut(s)	363, 693
SspI	AATATT	3 cut(s)	49, 175, 320
SspMI	CTAG	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	345
TaaI	ACNGT	2 cut(s)	460, 560
TaiI	ACGT	2 cut(s)	79, 127
TaqI	TCGA	2 cut(s)	12, 706
TasI	AATT	3 cut(s)	17, 330, 610
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	2 cut(s)	75, 540
TseI	GCWGC	3 cut(s)	417, 464, 639
TspDTI	ATGAA	3 cut(s)	11, 225, 267
TspRI	CASTG	2 cut(s)	75, 540
XapI	RAATTY	1 cut(s)	17
XbaI	TCTAGA	1 cut(s)	82
XceI	RCATGY	1 cut(s)	600
XcmI	CCANNNNNNNNNTGG	2 cut(s)	578, 669
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.