Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000147.1

Orthogroup ID

OG0008902

Physical Location & Seq

Genomic Coordinates Reverse (-)

279293 .. 280016

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000147.1_g000063.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgaaggctggactaggacttcctgatcttgatgcatggtacatgattgaaacaatagctgagaagaacaacattggatacacacaatttataaagctgagggggttattgtcgcatgttcaacaactacgaattggttactggggaatcagttctttcaaggcccaatccatgtctcatggattagcatctccacgttcaaaagatgctgcagttgagagtcagcaacctgctgaggcctccggtgttgggaggagctgggttcagagcatgttcagcagggataattcaaccagattaaactctttcagtcgtgttcgcaaatggacttctgatggtggctctccaggtatttcagttgctaaaattagttgcttgcattttatgttttttcgatacatcaccataatctcttgtcatgaagctacaaatgaaaatgggacatctcgtaagagagaattatctgcagctggacagaagaaaacccaaaccaatgttctagtacttagaggccatactggccctatcactgctctacattgtgtaacaaggagggaagttgggatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

189

Amino Acids

20.89

Weight (kDa)

10.02

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008902)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150541 RchiOBHm_Chr3g0491251 RchiOBHm_Chr5g0051891
rosa_multiflora	Rmu_co8305513.1_g000001 Rmu_sc0000147.1_g000063
rosa_roxburghii	Rroxscaffold_4G00294790 Rroxscaffold_5G00348390 Rroxscaffold_5G00366660 Rroxscaffold_6G00392110 Rroxscaffold_7G00199170
rosa_rugosa	Rorug04G0059000 Rorug04G0059100 Rorug04G0059100 Rorug04G0059200
rosa_samantha	Rh1AG138900 Rh1CG130900 Rh3AG297800 Rh3CG330800 Rh5AG452800 Rh5BG359300
rosa_wichuraiana	Rw2G039400 Rw3G026280 Rw6G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	238
AfaI	GTAC	2 cut(s)	41, 504
AfiI	CCNNNNNNNGG	1 cut(s)	249
AgsI	TTSAA	5 cut(s)	50, 122, 160, 201, 291
AjnI	CCWGG	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	480, 512
AluBI	AGCT	5 cut(s)	59, 97, 258, 425, 470
AluI	AGCT	5 cut(s)	59, 97, 258, 425, 470
Alw26I	GTCTC	1 cut(s)	180
AoxI	GGCC	4 cut(s)	162, 237, 511, 520
ApeKI	GCWGC	2 cut(s)	209, 467
Asp700I	GAANNNNTTC	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	163, 521
AsuHPI	GGTGA	1 cut(s)	394
BbvCI	CCTCAGC	2 cut(s)	98, 234
BbvI	GCAGC	2 cut(s)	196, 479
BccI	CCATC	1 cut(s)	329
BciT130I	CCWGG	1 cut(s)	348
BciVI	GTATCC	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	3 cut(s)	14, 500, 568
BfmI	CTRYAG	2 cut(s)	210, 465
BfuAI	ACCTGC	1 cut(s)	238
BfuI	GTATCC	1 cut(s)	71
BglI	GCCNNNNNGGC	1 cut(s)	519
BisI	GCNGC	2 cut(s)	210, 468
BlsI	GCNGC	2 cut(s)	211, 469
BmcAI	AGTACT	1 cut(s)	504
Bme1390I	CCNGG	1 cut(s)	348
BmgT120I	GGNCC	2 cut(s)	163, 521
BmrFI	CCNGG	1 cut(s)	348
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	3 cut(s)	22, 196, 197
BmuI	ACTGGG	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	330
Bpu10I	CCTNAGC	2 cut(s)	98, 234
BsaBI	GATNNNNATC	1 cut(s)	187
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse1I	ACTGG	2 cut(s)	146, 523
Bse8I	GATNNNNATC	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	348
BseJI	GATNNNNATC	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseMII	CTCAG	3 cut(s)	51, 89, 225
BseNI	ACTGG	2 cut(s)	146, 523
BseRI	GAGGAG	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	196, 479
BseYI	CCCAGC	1 cut(s)	258
BshFI	GGCC	4 cut(s)	164, 239, 513, 522
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	454
BsnI	GGCC	4 cut(s)	164, 239, 513, 522
Bsp143I	GATC	2 cut(s)	25, 564
BspANI	GGCC	4 cut(s)	164, 239, 513, 522
BspCNI	CTCAG	3 cut(s)	52, 90, 226
BspHI	TCATGA	1 cut(s)	418
BspMAI	CTGCAG	2 cut(s)	214, 469
BspMI	ACCTGC	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	146, 523
BssMI	GATC	2 cut(s)	25, 564
Bst2UI	CCWGG	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	4 cut(s)	60, 98, 234, 506
BstKTI	GATC	2 cut(s)	28, 567
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	2 cut(s)	25, 564
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 519
BstNI	CCWGG	1 cut(s)	348
BstNSI	RCATGY	2 cut(s)	119, 274
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	2 cut(s)	210, 465
BstV1I	GCAGC	2 cut(s)	196, 479
BstX2I	RGATCY	1 cut(s)	564
BstYI	RGATCY	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	4 cut(s)	164, 239, 513, 522
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	1 cut(s)	528
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	377
CciI	TCATGA	1 cut(s)	418
Cfr13I	GGNCC	2 cut(s)	163, 521
Csp6I	GTAC	2 cut(s)	40, 503
CviAII	CATG	7 cut(s)	36, 43, 116, 172, 179, 271, 419
CviQI	GTAC	2 cut(s)	40, 503
DdeI	CTNAG	4 cut(s)	60, 98, 234, 506
DpnI	GATC	2 cut(s)	27, 566
DpnII	GATC	2 cut(s)	25, 564
Eco147I	AGGCCT	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	346
EcoT22I	ATGCAT	1 cut(s)	37
FaeI	CATG	7 cut(s)	39, 46, 119, 175, 182, 274, 422
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	7 cut(s)	35, 42, 115, 171, 178, 270, 418
Fnu4HI	GCNGC	2 cut(s)	210, 468
Fsp4HI	GCNGC	2 cut(s)	210, 468
FspBI	CTAG	3 cut(s)	14, 500, 568
GluI	GCNGC	2 cut(s)	210, 468
GsaI	CCCAGC	1 cut(s)	262
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	4 cut(s)	164, 239, 513, 522
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	7 cut(s)	39, 46, 119, 175, 182, 274, 422
HinfI	GANTC	2 cut(s)	147, 220
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	1 cut(s)	394
Hpy188I	TCNGA	2 cut(s)	267, 334
Hpy188III	TCNNGA	3 cut(s)	23, 29, 419
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	35, 212, 379, 467
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 519
HpyF3I	CTNAG	4 cut(s)	60, 98, 234, 506
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	7 cut(s)	39, 46, 119, 175, 182, 274, 422
Kzo9I	GATC	2 cut(s)	25, 564
LmnI	GCTCC	1 cut(s)	255
Lsp1109I	GCAGC	2 cut(s)	196, 479
LweI	GCATC	3 cut(s)	22, 196, 197
MaeI	CTAG	3 cut(s)	14, 500, 568
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	2 cut(s)	137, 544
MalI	GATC	2 cut(s)	27, 566
MboI	GATC	2 cut(s)	25, 564
MboII	GAAGA	2 cut(s)	76, 490
MflI	RGATCY	1 cut(s)	564
MluCI	AATT	5 cut(s)	86, 132, 286, 366, 458
MlyI	GAGTC	1 cut(s)	229
MnlI	CCTC	6 cut(s)	93, 229, 246, 250, 503, 546
Mph1103I	ATGCAT	1 cut(s)	37
MroXI	GAANNNNTTC	1 cut(s)	151
MseI	TTAA	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	470
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	276, 519
NdeII	GATC	2 cut(s)	25, 564
NlaIII	CATG	7 cut(s)	39, 46, 119, 175, 182, 274, 422
NsiI	ATGCAT	1 cut(s)	37
NspI	RCATGY	2 cut(s)	119, 274
PagI	TCATGA	1 cut(s)	418
PceI	AGGCCT	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	211, 469
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PsiI	TTATAA	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	346
PspFI	CCCAGC	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	346
PspPI	GGNCC	2 cut(s)	163, 521
PstI	CTGCAG	2 cut(s)	214, 469
PsuI	RGATCY	1 cut(s)	564
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	2 cut(s)	41, 504
RsaNI	GTAC	2 cut(s)	40, 503
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	2 cut(s)	210, 468
Sau3AI	GATC	2 cut(s)	25, 564
Sau96I	GGNCC	2 cut(s)	163, 521
ScaI	AGTACT	1 cut(s)	504
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	348
SetI	ASST	8 cut(s)	61, 99, 199, 232, 260, 352, 427, 472
SfaNI	GCATC	3 cut(s)	22, 196, 197
SfcI	CTRYAG	2 cut(s)	210, 465
SfiI	GGCCNNNNNGGCC	1 cut(s)	519
Sse9I	AATT	5 cut(s)	86, 132, 286, 366, 458
SseBI	AGGCCT	1 cut(s)	239
SspMI	CTAG	3 cut(s)	14, 500, 568
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	346
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	394
TasI	AATT	5 cut(s)	86, 132, 286, 366, 458
TatI	WGTACW	1 cut(s)	502
TfiI	GAWTC	1 cut(s)	147
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	1 cut(s)	535
TseI	GCWGC	2 cut(s)	209, 467
TspDTI	ATGAA	3 cut(s)	17, 435, 447
TspRI	CASTG	1 cut(s)	535
XceI	RCATGY	2 cut(s)	119, 274
XmnI	GAANNNNTTC	1 cut(s)	151
XspI	CTAG	3 cut(s)	14, 500, 568
ZrmI	AGTACT	1 cut(s)	504
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.