Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008902

Physical Location & Seq

Genomic Coordinates Forward (+)

45119606 .. 45124630

Gene Structure 5025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAGCATGTATTCAAATGGTTTCTGGGAAAGCTACTTTGACTGTCTAATGGAACGGTCTACTCAAGTTACAATAAAGCTGAGGGGGTTATTGTCGCATGTTCAACAACTACAAATTGGTTACTGGGGAATCAGTTCTTTCAAGGCCCAATCCATGTCTCATGGATTAGCATCTCCACGTTCAAAAGATGCTGCAGTTGAGAGTCAGCAACCTGCCGAGGCCTCCGGTGTTGGGAGGAGCTGGGTTCAGAGCATGTTCAGCAAGGATAATTCAACCAGATTAAACTCTTTCAGTCGTGTTCGCAAATGGACTTCTGATGGTGGCTCTCCAGCTACAAATGAAAATGGGACATCTCGTAAGAGAGAATTATCTGCAGCTGGACAGAAGAAAACCCAAACCAATGTTCTAGTACTTAGAGGCCATACTAGCCCTATCACTGCTCTACATTGTGTAACAAGGAGGGAAGTTTGGGATCTAGTGGGTGACCGTGAAGACGCAGGTTTCTTCATTAGTGGGAGCACAGACTGCACGGTTAAGATCTGGGATCCTAGTTTACCCGTTGATTATGACTTATGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

193

Amino Acids

21.48

Weight (kDa)

8.7

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008902)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150541 RchiOBHm_Chr3g0491251 RchiOBHm_Chr5g0051891
rosa_multiflora	Rmu_co8305513.1_g000001 Rmu_sc0000147.1_g000063
rosa_roxburghii	Rroxscaffold_4G00294790 Rroxscaffold_5G00348390 Rroxscaffold_5G00366660 Rroxscaffold_6G00392110 Rroxscaffold_7G00199170
rosa_rugosa	Rorug04G0059000 Rorug04G0059100 Rorug04G0059100 Rorug04G0059200
rosa_samantha	Rh1AG138900 Rh1CG130900 Rh3AG297800 Rh3CG330800 Rh5AG452800 Rh5BG359300
rosa_wichuraiana	Rw2G039400 Rw3G026280 Rw6G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	220, 488
AccI	GTMKAC	1 cut(s)	59
AclWI	GGATC	3 cut(s)	480, 539, 552
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	5 cut(s)	15, 104, 142, 183, 273
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	5 cut(s)	33, 79, 240, 332, 377
AluI	AGCT	5 cut(s)	33, 79, 240, 332, 377
Alw21I	GWGCWC	1 cut(s)	521
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	3 cut(s)	480, 539, 552
AoxI	GGCC	3 cut(s)	144, 219, 418
ApeKI	GCWGC	2 cut(s)	191, 374
Asp700I	GAANNNNTTC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	494
BamHI	GGATCC	1 cut(s)	544
BbsI	GAAGAC	1 cut(s)	498
Bbv12I	GWGCWC	1 cut(s)	521
BbvCI	CCTCAGC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	178, 386
BccI	CCATC	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	4 cut(s)	407, 426, 476, 549
BfmI	CTRYAG	2 cut(s)	192, 372
BfuAI	ACCTGC	2 cut(s)	220, 488
BglII	AGATCT	1 cut(s)	537
BisI	GCNGC	2 cut(s)	192, 375
BlsI	GCNGC	2 cut(s)	193, 376
BmcAI	AGTACT	1 cut(s)	411
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	546
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	2 cut(s)	178, 179
BmuI	ACTGGG	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	498
BpmI	CTGGAG	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	128
Bse8I	GATNNNNATC	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	216
BseJI	GATNNNNATC	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	178, 386
BseYI	CCCAGC	1 cut(s)	240
BsgI	GTGCAG	1 cut(s)	511
BshFI	GGCC	3 cut(s)	146, 221, 420
BsiHKAI	GWGCWC	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	3 cut(s)	146, 221, 420
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	3 cut(s)	472, 537, 544
BspANI	GGCC	3 cut(s)	146, 221, 420
BspCNI	CTCAG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	546
BspMAI	CTGCAG	2 cut(s)	196, 376
BspMI	ACCTGC	2 cut(s)	220, 488
BspPI	GGATC	3 cut(s)	480, 539, 552
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	3 cut(s)	472, 537, 544
Bst4CI	ACNGT	4 cut(s)	44, 57, 488, 532
BstAPI	GCANNNNNTGC	1 cut(s)	525
BstDEI	CTNAG	2 cut(s)	80, 413
BstEII	GGTNACC	1 cut(s)	482
BstKTI	GATC	3 cut(s)	475, 540, 547
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	3 cut(s)	472, 537, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	258, 426, 525
BstNSI	RCATGY	3 cut(s)	10, 101, 256
BstPI	GGTNACC	1 cut(s)	482
BstSFI	CTRYAG	2 cut(s)	192, 372
BstV1I	GCAGC	2 cut(s)	178, 386
BstV2I	GAAGAC	1 cut(s)	498
BstX2I	RGATCY	3 cut(s)	472, 537, 544
BstYI	RGATCY	3 cut(s)	472, 537, 544
BsuRI	GGCC	3 cut(s)	146, 221, 420
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	435
BveI	ACCTGC	2 cut(s)	220, 488
Cfr13I	GGNCC	1 cut(s)	145
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	5 cut(s)	7, 98, 154, 161, 253
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	2 cut(s)	80, 413
DpnI	GATC	3 cut(s)	474, 539, 546
DpnII	GATC	3 cut(s)	472, 537, 544
Eco147I	AGGCCT	1 cut(s)	221
Eco91I	GGTNACC	1 cut(s)	482
EcoO65I	GGTNACC	1 cut(s)	482
FaeI	CATG	5 cut(s)	10, 101, 157, 164, 256
FaiI	YATR	8 cut(s)	8, 99, 155, 162, 254, 423, 567, 574
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	5 cut(s)	6, 97, 153, 160, 252
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	2 cut(s)	192, 375
Fsp4HI	GCNGC	2 cut(s)	192, 375
FspBI	CTAG	4 cut(s)	407, 426, 476, 549
GluI	GCNGC	2 cut(s)	192, 375
GsaI	CCCAGC	1 cut(s)	244
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	146, 221, 420
HapII	CCGG	1 cut(s)	225
HgaI	GACGC	1 cut(s)	503
Hin1II	CATG	5 cut(s)	10, 101, 157, 164, 256
HinfI	GANTC	2 cut(s)	129, 202
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	2 cut(s)	60, 554
Hpy188I	TCNGA	2 cut(s)	249, 316
Hpy8I	GTNNAC	2 cut(s)	60, 554
HpyCH4III	ACNGT	4 cut(s)	44, 57, 488, 532
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	3 cut(s)	194, 374, 528
HpyF10VI	GCNNNNNNNGC	3 cut(s)	258, 426, 525
HpyF3I	CTNAG	2 cut(s)	80, 413
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	5 cut(s)	10, 101, 157, 164, 256
Kzo9I	GATC	3 cut(s)	472, 537, 544
LmnI	GCTCC	2 cut(s)	237, 516
Lsp1109I	GCAGC	2 cut(s)	178, 386
LweI	GCATC	2 cut(s)	178, 179
MaeI	CTAG	4 cut(s)	407, 426, 476, 549
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	4 cut(s)	67, 119, 451, 482
MalI	GATC	3 cut(s)	474, 539, 546
MboI	GATC	3 cut(s)	472, 537, 544
MboII	GAAGA	3 cut(s)	397, 496, 503
MflI	RGATCY	3 cut(s)	472, 537, 544
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	3 cut(s)	114, 268, 365
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	6 cut(s)	75, 211, 228, 232, 410, 453
MroXI	GAANNNNTTC	1 cut(s)	133
MseI	TTAA	2 cut(s)	281, 534
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	3 cut(s)	258, 426, 525
NdeII	GATC	3 cut(s)	472, 537, 544
NlaIII	CATG	5 cut(s)	10, 101, 157, 164, 256
NlaIV	GGNNCC	1 cut(s)	546
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	482
NspI	RCATGY	3 cut(s)	10, 101, 256
PceI	AGGCCT	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	129
PkrI	GCNGC	2 cut(s)	193, 376
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PspEI	GGTNACC	1 cut(s)	482
PspFI	CCCAGC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	1 cut(s)	145
PstI	CTGCAG	2 cut(s)	196, 376
PsuI	RGATCY	3 cut(s)	472, 537, 544
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	281, 534
SatI	GCNGC	2 cut(s)	192, 375
Sau3AI	GATC	3 cut(s)	472, 537, 544
Sau96I	GGNCC	1 cut(s)	145
ScaI	AGTACT	1 cut(s)	411
SchI	GAGTC	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	521
SetI	ASST	8 cut(s)	35, 81, 181, 214, 242, 334, 379, 502
SfaNI	GCATC	2 cut(s)	178, 179
SfcI	CTRYAG	2 cut(s)	192, 372
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	3 cut(s)	114, 268, 365
SseBI	AGGCCT	1 cut(s)	221
SspMI	CTAG	4 cut(s)	407, 426, 476, 549
StuI	AGGCCT	1 cut(s)	221
TaaI	ACNGT	4 cut(s)	44, 57, 488, 532
TaiI	ACGT	1 cut(s)	181
TasI	AATT	3 cut(s)	114, 268, 365
TatI	WGTACW	1 cut(s)	409
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	2 cut(s)	281, 534
Tru9I	TTAA	2 cut(s)	281, 534
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	2 cut(s)	191, 374
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	2 cut(s)	354, 496
TspRI	CASTG	1 cut(s)	442
XceI	RCATGY	3 cut(s)	10, 101, 256
XmiI	GTMKAC	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	133
XspI	CTAG	4 cut(s)	407, 426, 476, 549
ZrmI	AGTACT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.