Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008902

Physical Location & Seq

Genomic Coordinates Reverse (-)

56142122 .. 56142637

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG359300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTCTCATGCATTAGCATCTCCACGTTCAAAAGATGCTGCAGTTGAGAGTCAGCAACCTACCGAGGCCTCCGGTGTTGGGAGGAGCTGGGTTAAGAGCATGTTCAGCAGGGATAATTCAACCAGATTAAACTCTTTCAGTATTGTTCGCAAATGGACTTCTGATGGTGGCTCTCCAAGTATTTCAATTGCTAAAATTAGTTGCTTGCATTTTATGTTTTTTCAATACATCACCATAATTTCTTGTCATGAAGCTACAAATGAAAATGGGACATCTCGTAAGCGAGAATTATCTGCAGCTGGACAGAAGAAAACCCAAACCAATGTTCGAGTACTTAGAGGCCATACTGGCCCTATCACTGCTCTACATTGTGTAACAAGGAGGGAAGTTTGGGATCTAGTGGGTGACCGTGAAGACGCAGGTTTCTTCATCAGTGGGAGCACAGACTGCACGGTGAGCTTCGCATTTTTAGTTGCTTCTACCATACAACTCCATTCACAAGAGTCTATCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

171

Amino Acids

18.77

Weight (kDa)

9.07

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008902)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150541 RchiOBHm_Chr3g0491251 RchiOBHm_Chr5g0051891
rosa_multiflora	Rmu_co8305513.1_g000001 Rmu_sc0000147.1_g000063
rosa_roxburghii	Rroxscaffold_4G00294790 Rroxscaffold_5G00348390 Rroxscaffold_5G00366660 Rroxscaffold_6G00392110 Rroxscaffold_7G00199170
rosa_rugosa	Rorug04G0059000 Rorug04G0059100 Rorug04G0059100 Rorug04G0059200
rosa_samantha	Rh1AG138900 Rh1CG130900 Rh3AG297800 Rh3CG330800 Rh5AG452800 Rh5BG359300
rosa_wichuraiana	Rw2G039400 Rw3G026280 Rw6G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	410
AclWI	GGATC	1 cut(s)	402
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	78
AgsI	TTSAA	4 cut(s)	30, 120, 186, 224
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AluBI	AGCT	4 cut(s)	87, 254, 299, 459
AluI	AGCT	4 cut(s)	87, 254, 299, 459
Alw21I	GWGCWC	1 cut(s)	443
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	402
AoxI	GGCC	3 cut(s)	66, 340, 349
ApeKI	GCWGC	2 cut(s)	38, 296
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	3 cut(s)	223, 416, 466
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	443
BbvI	GCAGC	2 cut(s)	25, 308
BccI	CCATC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	2 cut(s)	39, 294
BfuAI	ACCTGC	1 cut(s)	410
BglI	GCCNNNNNGGC	1 cut(s)	348
BisI	GCNGC	2 cut(s)	39, 297
BlsI	GCNGC	2 cut(s)	40, 298
BmcAI	AGTACT	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	350
BmsI	GCATC	2 cut(s)	25, 26
BpiI	GAAGAC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	63
BsaWI	WCCGGW	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	352
BseDI	CCNNGG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	25, 308
BseYI	CCCAGC	1 cut(s)	87
BsgI	GTGCAG	1 cut(s)	433
BshFI	GGCC	3 cut(s)	68, 342, 351
BsiHKAI	GWGCWC	1 cut(s)	443
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	3 cut(s)	68, 342, 351
Bsp1286I	GDGCHC	1 cut(s)	443
Bsp143I	GATC	1 cut(s)	394
BspANI	GGCC	3 cut(s)	68, 342, 351
BspHI	TCATGA	1 cut(s)	247
BspMAI	CTGCAG	2 cut(s)	43, 298
BspMI	ACCTGC	1 cut(s)	410
BspPI	GGATC	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	394
Bst4CI	ACNGT	2 cut(s)	410, 454
BstAPI	GCANNNNNTGC	1 cut(s)	447
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	335
BstEII	GGTNACC	1 cut(s)	404
BstKTI	GATC	1 cut(s)	397
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 348, 447, 456
BstNSI	RCATGY	1 cut(s)	103
BstPI	GGTNACC	1 cut(s)	404
BstSFI	CTRYAG	2 cut(s)	39, 294
BstV1I	GCAGC	2 cut(s)	25, 308
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	3 cut(s)	68, 342, 351
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	2 cut(s)	357, 439
BveI	ACCTGC	1 cut(s)	410
Cac8I	GCNNGC	1 cut(s)	206
CciI	TCATGA	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	350
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	3 cut(s)	8, 100, 248
CviJI	RGCY	8 cut(s)	68, 87, 171, 254, 299, 342, 351, 459
CviKI_1	RGCY	8 cut(s)	68, 87, 171, 254, 299, 342, 351, 459
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
Eco147I	AGGCCT	1 cut(s)	68
Eco91I	GGTNACC	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	404
EcoT22I	ATGCAT	1 cut(s)	13
FaeI	CATG	3 cut(s)	11, 103, 251
FaiI	YATR	7 cut(s)	9, 101, 215, 236, 249, 345, 485
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	3 cut(s)	7, 99, 247
Fnu4HI	GCNGC	2 cut(s)	39, 297
Fsp4HI	GCNGC	2 cut(s)	39, 297
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	2 cut(s)	39, 297
GsaI	CCCAGC	1 cut(s)	91
HaeIII	GGCC	3 cut(s)	68, 342, 351
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	425
Hin1II	CATG	3 cut(s)	11, 103, 251
HinfI	GANTC	2 cut(s)	49, 503
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	3 cut(s)	223, 416, 466
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	248
HpyCH4III	ACNGT	2 cut(s)	410, 454
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	5 cut(s)	11, 41, 208, 296, 450
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 348, 447, 456
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	3 cut(s)	11, 103, 251
Kzo9I	GATC	1 cut(s)	394
LmnI	GCTCC	2 cut(s)	84, 438
LpnPI	CCDG	7 cut(s)	73, 85, 94, 136, 285, 333, 405
Lsp1109I	GCAGC	2 cut(s)	25, 308
LweI	GCATC	2 cut(s)	25, 26
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	2 cut(s)	373, 404
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	3 cut(s)	319, 418, 425
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	443
MluCI	AATT	5 cut(s)	115, 186, 195, 237, 287
MlyI	GAGTC	2 cut(s)	58, 512
MnlI	CCTC	5 cut(s)	58, 75, 79, 332, 375
Mph1103I	ATGCAT	1 cut(s)	13
MseI	TTAA	2 cut(s)	93, 128
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	1 cut(s)	72
MunI	CAATTG	1 cut(s)	186
MwoI	GCNNNNNNNGC	4 cut(s)	105, 348, 447, 456
NdeII	GATC	1 cut(s)	394
NlaIII	CATG	3 cut(s)	11, 103, 251
NmuCI	GTSAC	1 cut(s)	404
NsiI	ATGCAT	1 cut(s)	13
NspI	RCATGY	1 cut(s)	103
PagI	TCATGA	1 cut(s)	247
PceI	AGGCCT	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	40, 298
PleI	GAGTC	2 cut(s)	57, 511
PpsI	GAGTC	2 cut(s)	57, 511
PspEI	GGTNACC	1 cut(s)	404
PspFI	CCCAGC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	350
PstI	CTGCAG	2 cut(s)	43, 298
PsuI	RGATCY	1 cut(s)	394
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	93, 128
SatI	GCNGC	2 cut(s)	39, 297
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	1 cut(s)	350
ScaI	AGTACT	1 cut(s)	333
SchI	GAGTC	2 cut(s)	58, 512
SduI	GDGCHC	1 cut(s)	443
SetI	ASST	7 cut(s)	28, 61, 89, 256, 301, 424, 461
SfaNI	GCATC	2 cut(s)	25, 26
SfcI	CTRYAG	2 cut(s)	39, 294
SfiI	GGCCNNNNNGGCC	1 cut(s)	348
Sse9I	AATT	5 cut(s)	115, 186, 195, 237, 287
SseBI	AGGCCT	1 cut(s)	68
SspMI	CTAG	1 cut(s)	398
StuI	AGGCCT	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	410, 454
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	328
TasI	AATT	5 cut(s)	115, 186, 195, 237, 287
TatI	WGTACW	1 cut(s)	331
Tru1I	TTAA	2 cut(s)	93, 128
Tru9I	TTAA	2 cut(s)	93, 128
TscAI	CASTG	2 cut(s)	364, 439
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	2 cut(s)	38, 296
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	264, 276, 418
TspRI	CASTG	2 cut(s)	364, 439
XceI	RCATGY	1 cut(s)	103
XspI	CTAG	1 cut(s)	398
ZrmI	AGTACT	1 cut(s)	333
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.