Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008902

Physical Location & Seq

Genomic Coordinates Forward (+)

77593953 .. 77594877

Gene Structure 925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG452800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAGGCTGGACTAGGACTTCCTGATCTTGATGCATGGTACATGATTGAAACAATCGCTGAGAAGAACAACATTGGATACACACAATTTATAAAGCTGAGGGGGTTATTGTCGCATGTTCAACAACTACGAATTGGTTACTGGGGAATCAGTTCTTTCAAGGCCCAATCCATGTCTCATGGATTAGCATCTCCACGTTCAAAAGATGCTGCAGTTGAGAGTCAGCAACCTGCCGAGGCCTCCGGTGTTGGGAGGAGCTGGGTTCAGAGCATGTTCAGCTGGGATAATTCAACCAGATTAAACTCTTTCAGTCGTGTTCGCAAATGGACTTCTGATGGTGGCTCTCCAGCTACAAATGAAAATGGGACATCTCGTAAGAGAGAATTATCTGCAGCTGGACAGAAGAAAACCCAAACCAATGTTCTAGTACTTAGAGGCCATACTGGCCCTATCACTGCTCTACATTGTGTAACAAGGAGGGAAGTTTGGGATCTAGTGGGTGACCGTGAAGACGCAGGTTTCTTCATCAGTGGGAGCACAGACTGCACGGTTAAGATCTGGGATCCTAGTTTACCCGTTGATTATGACTTATGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

199

Amino Acids

22.03

Weight (kDa)

8.79

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008902)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150541 RchiOBHm_Chr3g0491251 RchiOBHm_Chr5g0051891
rosa_multiflora	Rmu_co8305513.1_g000001 Rmu_sc0000147.1_g000063
rosa_roxburghii	Rroxscaffold_4G00294790 Rroxscaffold_5G00348390 Rroxscaffold_5G00366660 Rroxscaffold_6G00392110 Rroxscaffold_7G00199170
rosa_rugosa	Rorug04G0059000 Rorug04G0059100 Rorug04G0059100 Rorug04G0059200
rosa_samantha	Rh1AG138900 Rh1CG130900 Rh3AG297800 Rh3CG330800 Rh5AG452800 Rh5BG359300
rosa_wichuraiana	Rw2G039400 Rw3G026280 Rw6G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	92
Acc36I	ACCTGC	2 cut(s)	238, 506
AclWI	GGATC	3 cut(s)	498, 557, 570
AfaI	GTAC	2 cut(s)	41, 429
AfiI	CCNNNNNNNGG	1 cut(s)	249
AgsI	TTSAA	5 cut(s)	50, 122, 160, 201, 291
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	5 cut(s)	97, 258, 279, 350, 395
AluI	AGCT	5 cut(s)	97, 258, 279, 350, 395
Alw21I	GWGCWC	1 cut(s)	539
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	3 cut(s)	498, 557, 570
AoxI	GGCC	4 cut(s)	162, 237, 436, 445
ApeKI	GCWGC	2 cut(s)	209, 392
Asp700I	GAANNNNTTC	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	163, 446
AsuHPI	GGTGA	1 cut(s)	512
BamHI	GGATCC	1 cut(s)	562
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	1 cut(s)	539
BbvCI	CCTCAGC	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	196, 404
BccI	CCATC	1 cut(s)	329
BciVI	GTATCC	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	4 cut(s)	14, 425, 494, 567
BfmI	CTRYAG	2 cut(s)	210, 390
BfuAI	ACCTGC	2 cut(s)	238, 506
BfuI	GTATCC	1 cut(s)	71
BglI	GCCNNNNNGGC	1 cut(s)	444
BglII	AGATCT	1 cut(s)	555
BisI	GCNGC	2 cut(s)	210, 393
BlsI	GCNGC	2 cut(s)	211, 394
BmcAI	AGTACT	1 cut(s)	429
BmgT120I	GGNCC	2 cut(s)	163, 446
BmiI	GGNNCC	1 cut(s)	564
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	3 cut(s)	22, 196, 197
BmuI	ACTGGG	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	98
BsaBI	GATNNNNATC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse1I	ACTGG	2 cut(s)	146, 448
Bse8I	GATNNNNATC	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	234
BseJI	GATNNNNATC	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseMII	CTCAG	2 cut(s)	51, 89
BseNI	ACTGG	2 cut(s)	146, 448
BseRI	GAGGAG	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	196, 404
BseYI	CCCAGC	2 cut(s)	258, 279
BsgI	GTGCAG	1 cut(s)	529
BshFI	GGCC	4 cut(s)	164, 239, 438, 447
BsiHKAI	GWGCWC	1 cut(s)	539
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	379
BsnI	GGCC	4 cut(s)	164, 239, 438, 447
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp143I	GATC	4 cut(s)	25, 490, 555, 562
BspANI	GGCC	4 cut(s)	164, 239, 438, 447
BspCNI	CTCAG	2 cut(s)	52, 90
BspLI	GGNNCC	1 cut(s)	564
BspMAI	CTGCAG	2 cut(s)	214, 394
BspMI	ACCTGC	2 cut(s)	238, 506
BspPI	GGATC	3 cut(s)	498, 557, 570
BsrI	ACTGG	2 cut(s)	146, 448
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	4 cut(s)	25, 490, 555, 562
Bst4CI	ACNGT	2 cut(s)	506, 550
BstAPI	GCANNNNNTGC	1 cut(s)	543
BstDEI	CTNAG	3 cut(s)	60, 98, 431
BstEII	GGTNACC	1 cut(s)	500
BstKTI	GATC	4 cut(s)	28, 493, 558, 565
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	4 cut(s)	25, 490, 555, 562
BstMWI	GCNNNNNNNGC	3 cut(s)	276, 444, 543
BstNSI	RCATGY	2 cut(s)	119, 274
BstPI	GGTNACC	1 cut(s)	500
BstSFI	CTRYAG	2 cut(s)	210, 390
BstV1I	GCAGC	2 cut(s)	196, 404
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	3 cut(s)	490, 555, 562
BstYI	RGATCY	3 cut(s)	490, 555, 562
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	4 cut(s)	164, 239, 438, 447
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	2 cut(s)	453, 535
BveI	ACCTGC	2 cut(s)	238, 506
Cfr13I	GGNCC	2 cut(s)	163, 446
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	2 cut(s)	40, 428
CviAII	CATG	6 cut(s)	36, 43, 116, 172, 179, 271
CviQI	GTAC	2 cut(s)	40, 428
DdeI	CTNAG	3 cut(s)	60, 98, 431
DpnI	GATC	4 cut(s)	27, 492, 557, 564
DpnII	GATC	4 cut(s)	25, 490, 555, 562
Eco147I	AGGCCT	1 cut(s)	239
Eco91I	GGTNACC	1 cut(s)	500
EcoO65I	GGTNACC	1 cut(s)	500
EcoT22I	ATGCAT	1 cut(s)	37
FaeI	CATG	6 cut(s)	39, 46, 119, 175, 182, 274
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	6 cut(s)	35, 42, 115, 171, 178, 270
Fnu4HI	GCNGC	2 cut(s)	210, 393
Fsp4HI	GCNGC	2 cut(s)	210, 393
FspBI	CTAG	4 cut(s)	14, 425, 494, 567
GluI	GCNGC	2 cut(s)	210, 393
GsaI	CCCAGC	2 cut(s)	262, 283
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	4 cut(s)	164, 239, 438, 447
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	1 cut(s)	521
Hin1II	CATG	6 cut(s)	39, 46, 119, 175, 182, 274
HinfI	GANTC	2 cut(s)	147, 220
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	1 cut(s)	572
Hpy188I	TCNGA	2 cut(s)	267, 334
Hpy188III	TCNNGA	2 cut(s)	23, 29
Hpy8I	GTNNAC	1 cut(s)	572
HpyCH4III	ACNGT	2 cut(s)	506, 550
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	35, 212, 392, 546
HpyF10VI	GCNNNNNNNGC	3 cut(s)	276, 444, 543
HpyF3I	CTNAG	3 cut(s)	60, 98, 431
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	6 cut(s)	39, 46, 119, 175, 182, 274
Kzo9I	GATC	4 cut(s)	25, 490, 555, 562
LmnI	GCTCC	2 cut(s)	255, 534
Lsp1109I	GCAGC	2 cut(s)	196, 404
LweI	GCATC	3 cut(s)	22, 196, 197
MaeI	CTAG	4 cut(s)	14, 425, 494, 567
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	3 cut(s)	137, 469, 500
MalI	GATC	4 cut(s)	27, 492, 557, 564
MboI	GATC	4 cut(s)	25, 490, 555, 562
MboII	GAAGA	4 cut(s)	76, 415, 514, 521
MflI	RGATCY	3 cut(s)	490, 555, 562
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	4 cut(s)	86, 132, 286, 383
MlyI	GAGTC	1 cut(s)	229
MnlI	CCTC	6 cut(s)	93, 229, 246, 250, 428, 471
Mph1103I	ATGCAT	1 cut(s)	37
MroXI	GAANNNNTTC	1 cut(s)	151
MseI	TTAA	2 cut(s)	299, 552
MspA1I	CMGCKG	2 cut(s)	279, 395
MspI	CCGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	3 cut(s)	276, 444, 543
NdeII	GATC	4 cut(s)	25, 490, 555, 562
NlaIII	CATG	6 cut(s)	39, 46, 119, 175, 182, 274
NlaIV	GGNNCC	1 cut(s)	564
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	500
NsiI	ATGCAT	1 cut(s)	37
NspI	RCATGY	2 cut(s)	119, 274
PceI	AGGCCT	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	211, 394
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PsiI	TTATAA	1 cut(s)	92
PspEI	GGTNACC	1 cut(s)	500
PspFI	CCCAGC	2 cut(s)	258, 279
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	2 cut(s)	163, 446
PstI	CTGCAG	2 cut(s)	214, 394
PsuI	RGATCY	3 cut(s)	490, 555, 562
PvuII	CAGCTG	2 cut(s)	279, 395
RsaI	GTAC	2 cut(s)	41, 429
RsaNI	GTAC	2 cut(s)	40, 428
SaqAI	TTAA	2 cut(s)	299, 552
SatI	GCNGC	2 cut(s)	210, 393
Sau3AI	GATC	4 cut(s)	25, 490, 555, 562
Sau96I	GGNCC	2 cut(s)	163, 446
ScaI	AGTACT	1 cut(s)	429
SchI	GAGTC	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	539
SetI	ASST	8 cut(s)	99, 199, 232, 260, 281, 352, 397, 520
SfaNI	GCATC	3 cut(s)	22, 196, 197
SfcI	CTRYAG	2 cut(s)	210, 390
SfiI	GGCCNNNNNGGCC	1 cut(s)	444
Sse9I	AATT	4 cut(s)	86, 132, 286, 383
SseBI	AGGCCT	1 cut(s)	239
SspMI	CTAG	4 cut(s)	14, 425, 494, 567
StuI	AGGCCT	1 cut(s)	239
TaaI	ACNGT	2 cut(s)	506, 550
TaiI	ACGT	1 cut(s)	199
TasI	AATT	4 cut(s)	86, 132, 286, 383
TatI	WGTACW	1 cut(s)	427
TfiI	GAWTC	1 cut(s)	147
Tru1I	TTAA	2 cut(s)	299, 552
Tru9I	TTAA	2 cut(s)	299, 552
TscAI	CASTG	2 cut(s)	460, 535
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	2 cut(s)	209, 392
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	3 cut(s)	17, 372, 514
TspRI	CASTG	2 cut(s)	460, 535
XceI	RCATGY	2 cut(s)	119, 274
XmnI	GAANNNNTTC	1 cut(s)	151
XspI	CTAG	4 cut(s)	14, 425, 494, 567
ZrmI	AGTACT	1 cut(s)	429
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.