Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008902

Physical Location & Seq

Genomic Coordinates Forward (+)

48631010 .. 48636162

Gene Structure 5153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGATGTTCCTTAACTTTTTCACTGGTTTTCAGATAAAGCTGAGGGGGTTATTGTCGCATGTTCAACAACTACAAATTGGTTACTGGGGAATCAGTTCTTTCAAGGCCCAATCCATGTCTCATGGATTAGCATCTCCACGTTCAAAAGATGCTGCAGTTGAGAGTCAGCAACCTGCCGAGGCCTCCGGTGTTGGGAGGAGCTGGGTTCAGAGCATGTTCAGCAAGGATAATTCAACCAGATTAAACTCTTTCAGTCGTGTTCGCAAATGGACTTCTGATGGTGGCTCTCCAGCTACAAATGAAAATGGGACATCTCGTAAGAGAGAATTATCTGCAGCTGGACAGAAGAAAACCCAAACCAATGTTCTAGTACTTAGAGGCCATACTAGCCCTATCACTGCTCTACATTGTGTAACAAGGAGGGAAGTTTGGGATCTAGTGGGTGACCGTGAAGACGCAGGTTTCTTCATTAGTGGGAGCACAGACTGCACGGTTAAGATCTGGGATCCTAGTTTACCCGTTGATTATGACTTATGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

180

Amino Acids

19.95

Weight (kDa)

9.3

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008902)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150541 RchiOBHm_Chr3g0491251 RchiOBHm_Chr5g0051891
rosa_multiflora	Rmu_co8305513.1_g000001 Rmu_sc0000147.1_g000063
rosa_roxburghii	Rroxscaffold_4G00294790 Rroxscaffold_5G00348390 Rroxscaffold_5G00366660 Rroxscaffold_6G00392110 Rroxscaffold_7G00199170
rosa_rugosa	Rorug04G0059000 Rorug04G0059100 Rorug04G0059100 Rorug04G0059200
rosa_samantha	Rh1AG138900 Rh1CG130900 Rh3AG297800 Rh3CG330800 Rh5AG452800 Rh5BG359300
rosa_wichuraiana	Rw2G039400 Rw3G026280 Rw6G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	181, 449
AclWI	GGATC	3 cut(s)	441, 500, 513
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	4 cut(s)	65, 103, 144, 234
AjuI	GAANNNNNNNTTGG	2 cut(s)	348, 380
AluBI	AGCT	4 cut(s)	40, 201, 293, 338
AluI	AGCT	4 cut(s)	40, 201, 293, 338
Alw21I	GWGCWC	1 cut(s)	482
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	3 cut(s)	441, 500, 513
AoxI	GGCC	3 cut(s)	105, 180, 379
ApeKI	GCWGC	2 cut(s)	152, 335
Asp700I	GAANNNNTTC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	455
BamHI	GGATCC	1 cut(s)	505
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	482
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	139, 347
BccI	CCATC	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	4 cut(s)	368, 387, 437, 510
BfmI	CTRYAG	2 cut(s)	153, 333
BfuAI	ACCTGC	2 cut(s)	181, 449
BglII	AGATCT	1 cut(s)	498
BisI	GCNGC	2 cut(s)	153, 336
BlsI	GCNGC	2 cut(s)	154, 337
BmcAI	AGTACT	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	507
BmrI	ACTGGG	1 cut(s)	94
BmsI	GCATC	2 cut(s)	139, 140
BmuI	ACTGGG	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	41
BsaBI	GATNNNNATC	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	2 cut(s)	28, 89
Bse8I	GATNNNNATC	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	177
BseJI	GATNNNNATC	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	28, 89
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	139, 347
BseYI	CCCAGC	1 cut(s)	201
BsgI	GTGCAG	1 cut(s)	472
BshFI	GGCC	3 cut(s)	107, 182, 381
BsiHKAI	GWGCWC	1 cut(s)	482
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	3 cut(s)	107, 182, 381
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp143I	GATC	3 cut(s)	433, 498, 505
BspANI	GGCC	3 cut(s)	107, 182, 381
BspCNI	CTCAG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	507
BspMAI	CTGCAG	2 cut(s)	157, 337
BspMI	ACCTGC	2 cut(s)	181, 449
BspPI	GGATC	3 cut(s)	441, 500, 513
BsrI	ACTGG	2 cut(s)	28, 89
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	433, 498, 505
Bst4CI	ACNGT	2 cut(s)	449, 493
BstAPI	GCANNNNNTGC	1 cut(s)	486
BstDEI	CTNAG	2 cut(s)	41, 374
BstEII	GGTNACC	1 cut(s)	443
BstKTI	GATC	3 cut(s)	436, 501, 508
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	3 cut(s)	433, 498, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	219, 387, 486
BstNSI	RCATGY	2 cut(s)	62, 217
BstPI	GGTNACC	1 cut(s)	443
BstSFI	CTRYAG	2 cut(s)	153, 333
BstV1I	GCAGC	2 cut(s)	139, 347
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	3 cut(s)	433, 498, 505
BstYI	RGATCY	3 cut(s)	433, 498, 505
BsuRI	GGCC	3 cut(s)	107, 182, 381
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	21, 396
BveI	ACCTGC	2 cut(s)	181, 449
Cfr13I	GGNCC	1 cut(s)	106
CseI	GACGC	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	4 cut(s)	59, 115, 122, 214
CviJI	RGCY	9 cut(s)	40, 107, 182, 201, 285, 293, 338, 381, 390
CviKI_1	RGCY	9 cut(s)	40, 107, 182, 201, 285, 293, 338, 381, 390
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	2 cut(s)	41, 374
DpnI	GATC	3 cut(s)	435, 500, 507
DpnII	GATC	3 cut(s)	433, 498, 505
Eco147I	AGGCCT	1 cut(s)	182
Eco91I	GGTNACC	1 cut(s)	443
EcoO65I	GGTNACC	1 cut(s)	443
FaeI	CATG	4 cut(s)	62, 118, 125, 217
FaiI	YATR	7 cut(s)	60, 116, 123, 215, 384, 528, 535
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	4 cut(s)	58, 114, 121, 213
Fnu4HI	GCNGC	2 cut(s)	153, 336
Fsp4HI	GCNGC	2 cut(s)	153, 336
FspBI	CTAG	4 cut(s)	368, 387, 437, 510
GluI	GCNGC	2 cut(s)	153, 336
GsaI	CCCAGC	1 cut(s)	205
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	107, 182, 381
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	1 cut(s)	464
Hin1II	CATG	4 cut(s)	62, 118, 125, 217
HinfI	GANTC	2 cut(s)	90, 163
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	3 cut(s)	33, 210, 277
Hpy8I	GTNNAC	1 cut(s)	515
HpyCH4III	ACNGT	2 cut(s)	449, 493
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	3 cut(s)	155, 335, 489
HpyF10VI	GCNNNNNNNGC	3 cut(s)	219, 387, 486
HpyF3I	CTNAG	2 cut(s)	41, 374
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	4 cut(s)	62, 118, 125, 217
Kzo9I	GATC	3 cut(s)	433, 498, 505
LmnI	GCTCC	2 cut(s)	198, 477
Lsp1109I	GCAGC	2 cut(s)	139, 347
LweI	GCATC	2 cut(s)	139, 140
MaeI	CTAG	4 cut(s)	368, 387, 437, 510
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	3 cut(s)	80, 412, 443
MalI	GATC	3 cut(s)	435, 500, 507
MboI	GATC	3 cut(s)	433, 498, 505
MboII	GAAGA	3 cut(s)	358, 457, 464
MflI	RGATCY	3 cut(s)	433, 498, 505
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	3 cut(s)	75, 229, 326
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	6 cut(s)	36, 172, 189, 193, 371, 414
MroXI	GAANNNNTTC	1 cut(s)	94
MseI	TTAA	3 cut(s)	12, 242, 495
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	3 cut(s)	219, 387, 486
NdeII	GATC	3 cut(s)	433, 498, 505
NlaIII	CATG	4 cut(s)	62, 118, 125, 217
NlaIV	GGNNCC	1 cut(s)	507
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	443
NspI	RCATGY	2 cut(s)	62, 217
PceI	AGGCCT	1 cut(s)	182
PdmI	GAANNNNTTC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	154, 337
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
PspEI	GGTNACC	1 cut(s)	443
PspFI	CCCAGC	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	507
PspPI	GGNCC	1 cut(s)	106
PstI	CTGCAG	2 cut(s)	157, 337
PsuI	RGATCY	3 cut(s)	433, 498, 505
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SaqAI	TTAA	3 cut(s)	12, 242, 495
SatI	GCNGC	2 cut(s)	153, 336
Sau3AI	GATC	3 cut(s)	433, 498, 505
Sau96I	GGNCC	1 cut(s)	106
ScaI	AGTACT	1 cut(s)	372
SchI	GAGTC	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	482
SetI	ASST	7 cut(s)	42, 142, 175, 203, 295, 340, 463
SfaNI	GCATC	2 cut(s)	139, 140
SfcI	CTRYAG	2 cut(s)	153, 333
Sse9I	AATT	3 cut(s)	75, 229, 326
SseBI	AGGCCT	1 cut(s)	182
SspMI	CTAG	4 cut(s)	368, 387, 437, 510
StuI	AGGCCT	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	449, 493
TaiI	ACGT	1 cut(s)	142
TasI	AATT	3 cut(s)	75, 229, 326
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	3 cut(s)	12, 242, 495
Tru9I	TTAA	3 cut(s)	12, 242, 495
TscAI	CASTG	2 cut(s)	28, 403
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	2 cut(s)	152, 335
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	2 cut(s)	315, 457
TspRI	CASTG	2 cut(s)	28, 403
XceI	RCATGY	2 cut(s)	62, 217
XmnI	GAANNNNTTC	1 cut(s)	94
XspI	CTAG	4 cut(s)	368, 387, 437, 510
ZrmI	AGTACT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.