Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008902

Physical Location & Seq

Genomic Coordinates Forward (+)

20503697 .. 20505183

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAGCATGTATTCAAATGGTTTCTGGGAAAGCTACTTTGACTGTCTAATGGAACGGTCTTCAAACAAGTCGGCCAACTATGCCTCTTTGGTGACTGATCAGCTATCTTTGGTGGAATTACACATGGCTGGACTAGGACTTCCTGATCTTGATGCATGGTACATGATTGAAACAATAGCTGAGAAGAACAACATTGGATACACACAATTTAGCATGTTCAGCAGGGATAATTCAACCAGATTAAACTCTTTCAGTCGTGTTCGCAAATGGACTTCTGATGGTGGCTCTCCAGCTACAAATGAAAATGGGACATCTCGTAAGAGAGAATTATCTGCAGCTGGACAGAAGAAAACCCAAACCAATGTTCTAATACTTAGAGGCCATACTAGCCCTATCACTGCTCTACATTGTGTAACAAGGAGGGAAGTTTGGGATCTAGTGGGTGACTCTACCAAAGTGATTTTGAGTAAGGCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

159

Amino Acids

17.8

Weight (kDa)

8.58

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008902)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150541 RchiOBHm_Chr3g0491251 RchiOBHm_Chr5g0051891
rosa_multiflora	Rmu_co8305513.1_g000001 Rmu_sc0000147.1_g000063
rosa_roxburghii	Rroxscaffold_4G00294790 Rroxscaffold_5G00348390 Rroxscaffold_5G00366660 Rroxscaffold_6G00392110 Rroxscaffold_7G00199170
rosa_rugosa	Rorug04G0059000 Rorug04G0059100 Rorug04G0059100 Rorug04G0059200
rosa_samantha	Rh1AG138900 Rh1CG130900 Rh3AG297800 Rh3CG330800 Rh5AG452800 Rh5BG359300
rosa_wichuraiana	Rw2G039400 Rw3G026280 Rw6G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	441
AcoI	YGGCCR	1 cut(s)	72
AfaI	GTAC	1 cut(s)	161
AgsI	TTSAA	4 cut(s)	15, 63, 170, 234
AjuI	GAANNNNNNNTTGG	2 cut(s)	348, 380
AluBI	AGCT	6 cut(s)	33, 103, 179, 293, 338, 477
AluI	AGCT	6 cut(s)	33, 103, 179, 293, 338, 477
AlwI	GGATC	1 cut(s)	441
AoxI	GGCC	2 cut(s)	72, 379
ApeKI	GCWGC	1 cut(s)	335
AsuHPI	GGTGA	2 cut(s)	103, 455
AsuNHI	GCTAGC	1 cut(s)	473
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	1 cut(s)	272
BciVI	GTATCC	1 cut(s)	191
BclI	TGATCA	1 cut(s)	97
BfaI	CTAG	5 cut(s)	134, 387, 437, 474, 478
BfmI	CTRYAG	1 cut(s)	333
BfuI	GTATCC	1 cut(s)	191
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
BmsI	GCATC	1 cut(s)	142
BmtI	GCTAGC	1 cut(s)	477
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	347
BshFI	GGCC	2 cut(s)	74, 381
BslFI	GGGAC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	74, 381
Bsp143I	GATC	3 cut(s)	97, 145, 433
BspANI	GGCC	2 cut(s)	74, 381
BspCNI	CTCAG	1 cut(s)	172
BspMAI	CTGCAG	1 cut(s)	337
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	1 cut(s)	441
BssMI	GATC	3 cut(s)	97, 145, 433
Bst4CI	ACNGT	2 cut(s)	44, 57
BstC8I	GCNNGC	1 cut(s)	475
BstDEI	CTNAG	2 cut(s)	180, 374
BstKTI	GATC	3 cut(s)	100, 148, 436
BstMBI	GATC	3 cut(s)	97, 145, 433
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 219, 387
BstNSI	RCATGY	2 cut(s)	10, 217
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	347
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuI	GTATCC	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	74, 381
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	1 cut(s)	475
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	5 cut(s)	7, 124, 156, 163, 214
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	2 cut(s)	180, 374
DpnI	GATC	3 cut(s)	99, 147, 435
DpnII	GATC	3 cut(s)	97, 145, 433
EaeI	YGGCCR	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	157
FaeI	CATG	5 cut(s)	10, 127, 159, 166, 217
FaiI	YATR	7 cut(s)	8, 81, 125, 157, 164, 215, 384
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	5 cut(s)	6, 123, 155, 162, 213
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	336
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	5 cut(s)	134, 387, 437, 474, 478
GluI	GCNGC	1 cut(s)	336
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	74, 381
Hin1II	CATG	5 cut(s)	10, 127, 159, 166, 217
HinfI	GANTC	1 cut(s)	446
HphI	GGTGA	2 cut(s)	103, 455
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	2 cut(s)	143, 149
HpyCH4III	ACNGT	2 cut(s)	44, 57
HpyCH4V	TGCA	2 cut(s)	155, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 219, 387
HpyF3I	CTNAG	2 cut(s)	180, 374
Hsp92II	CATG	5 cut(s)	10, 127, 159, 166, 217
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	97, 145, 433
LpnPI	CCDG	7 cut(s)	10, 114, 156, 208, 250, 303, 324
Lsp1109I	GCAGC	1 cut(s)	347
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	5 cut(s)	134, 387, 437, 474, 478
MaeIII	GTNAC	3 cut(s)	91, 412, 443
MalI	GATC	3 cut(s)	99, 147, 435
MboI	GATC	3 cut(s)	97, 145, 433
MboII	GAAGA	3 cut(s)	51, 196, 358
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	4 cut(s)	116, 206, 229, 326
MlyI	GAGTC	1 cut(s)	440
MnlI	CCTC	3 cut(s)	94, 371, 414
Mph1103I	ATGCAT	1 cut(s)	157
MseI	TTAA	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	338
MwoI	GCNNNNNNNGC	3 cut(s)	80, 219, 387
NdeII	GATC	3 cut(s)	97, 145, 433
NheI	GCTAGC	1 cut(s)	473
NlaIII	CATG	5 cut(s)	10, 127, 159, 166, 217
NmuCI	GTSAC	2 cut(s)	91, 443
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	2 cut(s)	10, 217
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	3 cut(s)	97, 145, 433
SchI	GAGTC	1 cut(s)	440
SetI	ASST	6 cut(s)	35, 105, 181, 295, 340, 479
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	333
Sse9I	AATT	4 cut(s)	116, 206, 229, 326
SspMI	CTAG	5 cut(s)	134, 387, 437, 474, 478
TaaI	ACNGT	2 cut(s)	44, 57
TasI	AATT	4 cut(s)	116, 206, 229, 326
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	2 cut(s)	91, 443
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	2 cut(s)	91, 443
TspDTI	ATGAA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	403
XceI	RCATGY	2 cut(s)	10, 217
XspI	CTAG	5 cut(s)	134, 387, 437, 474, 478
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.