RchiOBHm_Chr5g0055161

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014746
Physical Location & Seq
Forward (+)
57982870 .. 57984119
1250 bp
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UTR
Exon/CDS
Intron
PRQ33221

Sequence Viewer

Length: 405 bp
ATGAATCCTCCTCTTGGAGAAATGCTGATTCGAGCTGATCAACCTTGGTTGGATTTTGTTGTTGCTTCTTGCAATGGTCTTCAGCAGTATAGAAGCAAGCTATATATGGCAGAAACTTATATCTACTGGAGAAGCGTCGTGAGCAATGGAGGGTACGTCAAGGGTGGTGTTAGATACTTGATTATGGATAACTTGGTAGTGAAGCCTATGTCTACCGTATCAATTGTAGATGTGCTTAAAGAGTTGAATGTTATGGAGGTTGGTGTCCTTGAACAGAAGTTGGTTGGTCTTGGCACGGAAGAGGGGCTAAAGTTGGTGAAGGCATCTTTGGAGTCAAATCCAGTTCTCAGCAATATATTCCTTGGTAATGAACTGCATAAATTACGTTTCAACTCTGGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

134

Amino Acids

14.91

Weight (kDa)

6.58

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 43 - 124 1.4e-11 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 65
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 3 cut(s) 247, 272, 391
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 2 cut(s) 35, 100
AluI AGCT 2 cut(s) 35, 100
AsuHPI GGTGA 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 71
BclI TGATCA 1 cut(s) 37
BmsI GCATC 1 cut(s) 332
BpiI GAAGAC 1 cut(s) 71
BpmI CTGGAG 1 cut(s) 148
BsaJI CCNNGG 2 cut(s) 44, 361
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 2 cut(s) 131, 341
Bse3DI GCAATG 2 cut(s) 79, 151
BseDI CCNNGG 2 cut(s) 44, 361
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMI GCAATG 2 cut(s) 79, 151
BseMII CTCAG 1 cut(s) 361
BseNI ACTGG 2 cut(s) 131, 341
BslI CCNNNNNNNGG 1 cut(s) 14
Bsp143I GATC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 360
BsrDI GCAATG 2 cut(s) 79, 151
BsrI ACTGG 2 cut(s) 131, 341
BssECI CCNNGG 2 cut(s) 44, 361
BssMI GATC 1 cut(s) 37
BssT1I CCWWGG 2 cut(s) 44, 361
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 2 cut(s) 347, 402
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstV2I GAAGAC 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 98
CseI GACGC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 154
CviJI RGCY 4 cut(s) 35, 100, 205, 307
CviKI_1 RGCY 4 cut(s) 35, 100, 205, 307
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 2 cut(s) 347, 402
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco130I CCWWGG 2 cut(s) 44, 361
Eco57I CTGAAG 1 cut(s) 65
EcoT14I CCWWGG 2 cut(s) 44, 361
ErhI CCWWGG 2 cut(s) 44, 361
FbaI TGATCA 1 cut(s) 37
FblI GTMKAC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 148
HgaI GACGC 1 cut(s) 124
HinfI GANTC 3 cut(s) 4, 28, 332
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 1 cut(s) 213
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 1 cut(s) 213
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 2 cut(s) 156, 385
HpyCH4V TGCA 2 cut(s) 72, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 2 cut(s) 347, 402
HpySE526I ACGT 2 cut(s) 156, 385
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 3 cut(s) 112, 354, 381
LweI GCATC 1 cut(s) 332
MaeII ACGT 2 cut(s) 156, 385
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 2 cut(s) 71, 311
MfeI CAATTG 1 cut(s) 222
MluCI AATT 2 cut(s) 222, 380
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 5 cut(s) 18, 21, 143, 250, 295
MseI TTAA 1 cut(s) 237
MunI CAATTG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 141
NdeII GATC 1 cut(s) 37
PfeI GAWTC 2 cut(s) 4, 28
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 237
Sau3AI GATC 1 cut(s) 37
SchI GAGTC 1 cut(s) 341
SetI ASST 6 cut(s) 37, 46, 102, 159, 261, 388
SfaNI GCATC 1 cut(s) 332
Sse9I AATT 2 cut(s) 222, 380
StyI CCWWGG 2 cut(s) 44, 361
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 2 cut(s) 159, 388
TaqI TCGA 1 cut(s) 31
TasI AATT 2 cut(s) 222, 380
TfiI GAWTC 2 cut(s) 4, 28
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TspDTI ATGAA 2 cut(s) 17, 384
TspGWI ACGGA 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.