Rh2AG275900

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014746
Physical Location & Seq
Forward (+)
33046676 .. 33071939
25264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG275900.1

Sequence Viewer

Length: 348 bp
ATGGAGGGTATCAAGGGTGGTGTTACATACGTGATTATGGATAACTTGGTAGTGAAGCCTATGCCTACAATATCAATTGTAGATGTGCTTAAAGAGTTGAATGTTATGGAGGTTGGTGCCCTTGAACAGAAGTTGGTTAGTCTTGACACAGAAGAGGGGCTAAAGTTGGTGAAGGCATCTTTGGAGTCAAATACAGTTCTCAGCATGTATGCCTTGACTGTAAACCCACCCCAACAAAATAAAAAAACATGCATCGGAGAGCTTATCAAGATAGATAAAGATGGAAAATCATATTTTGACACCGAATTTTTGGAGCAACAAATGAAGAGGTCTAAAATACTGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

115

Amino Acids

12.83

Weight (kDa)

5.18

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 4 - 93 5.9e-09 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 116
AcsI RAATTY 1 cut(s) 305
AgsI TTSAA 2 cut(s) 100, 125
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
ApoI RAATTY 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 121
BanI GGYRCC 1 cut(s) 116
BccI CCATC 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 118
BmsI GCATC 2 cut(s) 185, 261
BsaAI YACGTR 1 cut(s) 31
BseMII CTCAG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 121
BshNI GGYRCC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 121
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 196, 220
Bst6I CTCTTC 2 cut(s) 147, 320
BstBAI YACGTR 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 200
BstNSI RCATGY 2 cut(s) 208, 252
BstSLI GKGCMC 1 cut(s) 121
CviAII CATG 2 cut(s) 205, 249
CviJI RGCY 3 cut(s) 58, 160, 262
CviKI_1 RGCY 3 cut(s) 58, 160, 262
DdeI CTNAG 1 cut(s) 200
Eam1104I CTCTTC 2 cut(s) 147, 320
EarI CTCTTC 2 cut(s) 147, 320
EcoT22I ATGCAT 1 cut(s) 254
FaeI CATG 2 cut(s) 208, 252
FaiI YATR 8 cut(s) 28, 38, 62, 107, 206, 210, 250, 292
FatI CATG 2 cut(s) 204, 248
Hin1II CATG 2 cut(s) 208, 252
HinfI GANTC 1 cut(s) 185
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 2 cut(s) 143, 268
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 2 cut(s) 196, 220
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 2 cut(s) 252, 343
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 2 cut(s) 208, 252
LmnI GCTCC 1 cut(s) 313
LweI GCATC 2 cut(s) 185, 261
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 22
MboII GAAGA 2 cut(s) 164, 337
MfeI CAATTG 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 2 cut(s) 75, 305
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 3 cut(s) 103, 148, 321
Mph1103I ATGCAT 1 cut(s) 254
MseI TTAA 1 cut(s) 90
MunI CAATTG 1 cut(s) 75
NlaIII CATG 2 cut(s) 208, 252
NlaIV GGNNCC 1 cut(s) 118
NsiI ATGCAT 1 cut(s) 254
NspI RCATGY 2 cut(s) 208, 252
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Ppu21I YACGTR 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 118
SaqAI TTAA 1 cut(s) 90
SchI GAGTC 1 cut(s) 194
SduI GDGCHC 1 cut(s) 121
SetI ASST 4 cut(s) 33, 114, 264, 332
SfaNI GCATC 2 cut(s) 185, 261
SgeI CNNG 9 cut(s) 25, 43, 58, 134, 155, 217, 226, 261, 280
Sse9I AATT 2 cut(s) 75, 305
TaaI ACNGT 2 cut(s) 196, 220
TaiI ACGT 1 cut(s) 33
TasI AATT 2 cut(s) 75, 305
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TspDTI ATGAA 1 cut(s) 338
XapI RAATTY 1 cut(s) 305
XceI RCATGY 2 cut(s) 208, 252
Zsp2I ATGCAT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.