Rh4AG222600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0014746
Physical Location & Seq
Reverse (-)
52194421 .. 52195802
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG222600.1

Sequence Viewer

Length: 333 bp
ATGAATGCGCTCTGTCTGCAACAGCTGCATCTACTGGAGAAGCGCCGTGCAGCAATGGAGGGTTGGTGCCTTGAACAGAAGCTGGGGCTAAAGTTGGTGAAGGCATCTTTGGAGTCAAATACAGTTCTCAGCATGTATTCCTTGGCTTCAGGGTTGCTATTAAAAATATGGTTCCTATCCATTGAAAGGGAAATATTGCCACGAAATGGCTCTAAGGATTCTTCTGAGATATCATTTTATGCAGTGGTTCAGGGAAGGCCACACAAGGAGCGATCTAGGTTTGATTGTCAAGTATGCATGTCTAAAGATACATTTAGATTCCGGCTGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.7

Weight (kDa)

9.3

Isoelectric Point (pI)

64.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 66
AccB7I CCANNNNNTGG 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 132
AfiI CCNNNNNNNGG 2 cut(s) 186, 206
AgsI TTSAA 2 cut(s) 74, 185
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 2 cut(s) 25, 82
AluI AGCT 2 cut(s) 25, 82
AlwNI CAGNNNCTG 1 cut(s) 82
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 2 cut(s) 25, 50
AspLEI GCGC 2 cut(s) 10, 45
AsuHPI GGTGA 1 cut(s) 109
BanI GGYRCC 1 cut(s) 66
BbvI GCAGC 2 cut(s) 12, 62
BceAI ACGGC 1 cut(s) 30
BfaI CTAG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 46
BisI GCNGC 2 cut(s) 26, 51
BlsI GCNGC 2 cut(s) 27, 52
BmiI GGNNCC 2 cut(s) 68, 173
BmsI GCATC 2 cut(s) 37, 113
BpmI CTGGAG 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 206
Bse1I ACTGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 186, 206
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 2 cut(s) 142, 216
BseNI ACTGG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 12, 62
BseYI CCCAGC 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 1 cut(s) 259
BshNI GGYRCC 1 cut(s) 66
BsiSI CCGG 1 cut(s) 322
BslI CCNNNNNNNGG 2 cut(s) 186, 206
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 272
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 2 cut(s) 141, 217
BspLI GGNNCC 2 cut(s) 68, 173
BspT107I GGYRCC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 60
BsrI ACTGG 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 1 cut(s) 272
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 124
BstAPI GCANNNNNTGC 1 cut(s) 25
BstDEI CTNAG 3 cut(s) 128, 213, 225
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 2 cut(s) 10, 45
BstKTI GATC 1 cut(s) 275
BstMBI GATC 1 cut(s) 272
BstMWI GCNNNNNNNGC 2 cut(s) 16, 25
BstNSI RCATGY 2 cut(s) 136, 301
BstV1I GCAGC 2 cut(s) 12, 62
BsuRI GGCC 1 cut(s) 259
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
CaiI CAGNNNCTG 1 cut(s) 82
CfoI GCGC 2 cut(s) 10, 45
CviAII CATG 2 cut(s) 133, 298
CviJI RGCY 7 cut(s) 25, 82, 88, 146, 210, 259, 325
CviKI_1 RGCY 7 cut(s) 25, 82, 88, 146, 210, 259, 325
DdeI CTNAG 3 cut(s) 128, 213, 225
DpnI GATC 1 cut(s) 274
DpnII GATC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 141
Eco32I GATATC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 132
EcoRV GATATC 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 136, 301
FaiI YATR 5 cut(s) 134, 169, 240, 295, 299
FatI CATG 2 cut(s) 132, 297
Fnu4HI GCNGC 2 cut(s) 26, 51
Fsp4HI GCNGC 2 cut(s) 26, 51
FspBI CTAG 1 cut(s) 276
GlaI GCGC 2 cut(s) 9, 44
GluI GCNGC 2 cut(s) 26, 51
GsaI CCCAGC 1 cut(s) 86
GsuI CTGGAG 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 46
HaeIII GGCC 1 cut(s) 259
HapII CCGG 1 cut(s) 322
HhaI GCGC 2 cut(s) 10, 45
Hin1II CATG 2 cut(s) 136, 301
Hin6I GCGC 2 cut(s) 8, 43
HinP1I GCGC 2 cut(s) 8, 43
HinfI GANTC 3 cut(s) 113, 218, 318
HpaII CCGG 1 cut(s) 322
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 94, 249
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 5 cut(s) 19, 28, 50, 242, 297
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 25
HpyF3I CTNAG 3 cut(s) 128, 213, 225
Hsp92II CATG 2 cut(s) 136, 301
HspAI GCGC 2 cut(s) 8, 43
Kzo9I GATC 1 cut(s) 272
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 4 cut(s) 20, 68, 135, 236
Lsp1109I GCAGC 2 cut(s) 12, 62
LweI GCATC 2 cut(s) 37, 113
MaeI CTAG 1 cut(s) 276
MalI GATC 1 cut(s) 274
MboI GATC 1 cut(s) 272
MboII GAAGA 1 cut(s) 213
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 1 cut(s) 52
Mph1103I ATGCAT 1 cut(s) 299
MseI TTAA 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 1 cut(s) 322
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 2 cut(s) 16, 25
NdeII GATC 1 cut(s) 272
NlaIII CATG 2 cut(s) 136, 301
NlaIV GGNNCC 2 cut(s) 68, 173
NsiI ATGCAT 1 cut(s) 299
NspI RCATGY 2 cut(s) 136, 301
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 218, 318
PflMI CCANNNNNTGG 1 cut(s) 206
PkrI GCNGC 2 cut(s) 27, 52
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 68, 173
PstNI CAGNNNCTG 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 25
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 2 cut(s) 26, 51
Sau3AI GATC 1 cut(s) 272
SchI GAGTC 1 cut(s) 122
SetI ASST 3 cut(s) 27, 84, 281
SfaNI GCATC 2 cut(s) 37, 113
SspI AATATT 1 cut(s) 195
SspMI CTAG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 124
TfiI GAWTC 2 cut(s) 218, 318
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 1 cut(s) 249
TseI GCWGC 2 cut(s) 25, 50
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 249
Van91I CCANNNNNTGG 1 cut(s) 206
XceI RCATGY 2 cut(s) 136, 301
XspI CTAG 1 cut(s) 276
Zsp2I ATGCAT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.