RLG00000009304

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014746
Physical Location & Seq
Reverse (-)
50548893 .. 50550218
1326 bp
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UTR
Exon/CDS
Intron
RLM00000009304

Sequence Viewer

Length: 378 bp
ATGGTTGTTCGTTGCTCTTCCAATTCAAATCGGCGACTACTGCGTCCGATTGGAAGTTCGTTCCAACCTGCTAACTTTCGGTTGAGCTCGATCTACTGGAGAAGCGTTGTGAGCAATGGAGGGTACGTCAAGGGTGGTGTTACATACTTGATTATGGATAACTTGGTAGTGAAGCCTATGTCTACCGTATCAATTGTAGATGTGCTTAAAGAGTTGAATGTTATGGAGGTTGGTGTCCTTGAACAGAAGTTGGTTGGTCTTGGCACGGAAGAGGGGCTAAAGTTGGTGAAGGCATCTTTGGAGTCAAATACAGTTCTCAGCAATATATTCCTTGGTAATGAACTGCATAAATTACGTTTCAACTCTGGTGCTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

126

Amino Acids

13.77

Weight (kDa)

9.66

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 38 - 114 1.8e-12 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 42
Acc36I ACCTGC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 182
AfaI GTAC 1 cut(s) 125
AgsI TTSAA 4 cut(s) 27, 217, 242, 361
AjuI GAANNNNNNNTTGG 2 cut(s) 281, 313
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw21I GWGCWC 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 298
BanII GRGCYC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 76
BmsI GCATC 1 cut(s) 302
BpmI CTGGAG 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 331
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bse1I ACTGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 331
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 330
BspMI ACCTGC 1 cut(s) 76
BspQI GCTCTTC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 121
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 331
Bst4CI ACNGT 2 cut(s) 187, 313
Bst6I CTCTTC 2 cut(s) 22, 264
BstDEI CTNAG 1 cut(s) 317
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 2 cut(s) 40, 111
BveI ACCTGC 1 cut(s) 76
CseI GACGC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 124
CviJI RGCY 3 cut(s) 87, 175, 277
CviKI_1 RGCY 3 cut(s) 87, 175, 277
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 317
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
DrdI GACNNNNNNGTC 1 cut(s) 42
DseDI GACNNNNNNGTC 1 cut(s) 42
Eam1104I CTCTTC 2 cut(s) 22, 264
EarI CTCTTC 2 cut(s) 22, 264
Ecl136II GAGCTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 331
FaiI YATR 6 cut(s) 145, 155, 179, 224, 326, 348
FblI GTMKAC 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 118
HgaI GACGC 1 cut(s) 32
HinfI GANTC 1 cut(s) 302
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 183
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 187, 313
HpyCH4IV ACGT 2 cut(s) 126, 355
HpyCH4V TGCA 1 cut(s) 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 111
HpyF3I CTNAG 1 cut(s) 317
HpySE526I ACGT 2 cut(s) 126, 355
Kzo9I GATC 1 cut(s) 90
LguI GCTCTTC 1 cut(s) 22
LpnPI CCDG 3 cut(s) 81, 82, 351
LweI GCATC 1 cut(s) 302
MaeII ACGT 2 cut(s) 126, 355
MaeIII GTNAC 1 cut(s) 139
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 2 cut(s) 9, 281
MfeI CAATTG 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 3 cut(s) 22, 192, 350
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 3 cut(s) 113, 220, 265
MseI TTAA 1 cut(s) 207
MunI CAATTG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 40, 111
NdeII GATC 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 22
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp124BI GAGCTC 1 cut(s) 89
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SacI GAGCTC 1 cut(s) 89
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 207
Sau3AI GATC 1 cut(s) 90
SchI GAGTC 1 cut(s) 311
SduI GDGCHC 1 cut(s) 89
SetI ASST 5 cut(s) 70, 89, 129, 231, 358
SfaNI GCATC 1 cut(s) 302
Sse9I AATT 3 cut(s) 22, 192, 350
SstI GAGCTC 1 cut(s) 89
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 187, 313
TaiI ACGT 2 cut(s) 129, 358
TaqI TCGA 1 cut(s) 89
TasI AATT 3 cut(s) 22, 192, 350
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 354
TspGWI ACGGA 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.