Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014746

Physical Location & Seq

Genomic Coordinates Forward (+)

29228713 .. 29230165

Gene Structure 1453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG270600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGATAACTTCGTAGTGAAGCCTATGTCTACCATATCAATTGTAGATGTGCTTAAAGAGTTGAATGTTATGGAGGTTGGTGCCCTTGAACAGAAGTTGGTTAGTCTTGACACGGAAGAGGGGCTAAAGTTGGTGAAGGCATCTTTGGAGTCAAATACAGTTCTCAGCATGTATGCCTTGATCTTTGTTTGGTTTGCACTACCTCTGTTTCTCATGTGTACTGCAACGGATATGGCAGTACTATGTGGTGGTAATGGGGAGGGTTGCTATTCAAAATATGGTTCCTATCCATTGAAAGGGAAATATTGCCACGAAATGGCTCTGAGGATTCTTCTGAGATATCATTTAATGCAGTGGTTCAGGGAAGGGCACACAAGGAGCGATCTAGGTTTGATTGTCAAGTATGCATGTCTACAGATACCGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002940 GO:0003674 GO:0003824 GO:0004809 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM

Protein Analysis

142

Amino Acids

15.93

Weight (kDa)

6.28

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRM	PF02005	70 - 114	1.5e-15	N2,N2-dimethylguanosine tRNA methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014746)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20050 FvH4_7g21290
rosa_chinensis	RchiOBHm_Chr5g0055161
rosa_laevigata	RLG00000001292 RLG00000009304 RLG00000027410
rosa_multiflora	Rmu_sc0005964.1_g000002 Rmu_sc0033754.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242730
rosa_rugosa	Rorug02G0118800
rosa_samantha	Rh1AG332100 Rh2AG275900 Rh2BG270600 Rh4AG222600 Rh4DG114800 Rh5AG317600 Rh5BG177300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AccB7I	CCANNNNNTGG	1 cut(s)	316
AccI	GTMKAC	2 cut(s)	29, 412
AfaI	GTAC	2 cut(s)	220, 240
AfiI	CCNNNNNNNGG	2 cut(s)	296, 316
AgsI	TTSAA	4 cut(s)	64, 89, 273, 295
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AsuC2I	CCSGG	1 cut(s)	423
AsuHPI	GGTGA	1 cut(s)	145
BaeGI	GKGCMC	2 cut(s)	85, 372
BanI	GGYRCC	1 cut(s)	80
BcnI	CCSGG	1 cut(s)	423
BfaI	CTAG	2 cut(s)	386, 427
BfmI	CTRYAG	1 cut(s)	413
BmcAI	AGTACT	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	423
BmiI	GGNNCC	2 cut(s)	82, 283
BmrFI	CCNGG	1 cut(s)	423
BmsI	GCATC	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 316
BseLI	CCNNNNNNNGG	2 cut(s)	296, 316
BseMII	CTCAG	3 cut(s)	178, 314, 326
BseSI	GKGCMC	2 cut(s)	85, 372
BshNI	GGYRCC	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	422
BslI	CCNNNNNNNGG	2 cut(s)	296, 316
Bsp1286I	GDGCHC	2 cut(s)	85, 372
Bsp143I	GATC	2 cut(s)	180, 382
BspCNI	CTCAG	3 cut(s)	177, 315, 327
BspLI	GGNNCC	2 cut(s)	82, 283
BspT107I	GGYRCC	1 cut(s)	80
BssMI	GATC	2 cut(s)	180, 382
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	111
BstDEI	CTNAG	3 cut(s)	164, 323, 335
BstKTI	GATC	2 cut(s)	183, 385
BstMBI	GATC	2 cut(s)	180, 382
BstNSI	RCATGY	2 cut(s)	172, 411
BstSCI	CCNGG	1 cut(s)	421
BstSFI	CTRYAG	1 cut(s)	413
BstSLI	GKGCMC	2 cut(s)	85, 372
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	1 cut(s)	359
Csp6I	GTAC	2 cut(s)	219, 239
CviAII	CATG	3 cut(s)	169, 214, 408
CviJI	RGCY	4 cut(s)	22, 124, 320, 426
CviKI_1	RGCY	4 cut(s)	22, 124, 320, 426
CviQI	GTAC	2 cut(s)	219, 239
DdeI	CTNAG	3 cut(s)	164, 323, 335
DpnI	GATC	2 cut(s)	182, 384
DpnII	GATC	2 cut(s)	180, 382
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	341
EcoRV	GATATC	1 cut(s)	341
EcoT22I	ATGCAT	1 cut(s)	409
FaeI	CATG	3 cut(s)	172, 217, 411
FatI	CATG	3 cut(s)	168, 213, 407
FblI	GTMKAC	2 cut(s)	29, 412
FspBI	CTAG	2 cut(s)	386, 427
HapII	CCGG	1 cut(s)	422
Hin1II	CATG	3 cut(s)	172, 217, 411
HinfI	GANTC	2 cut(s)	149, 328
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	3 cut(s)	30, 219, 413
Hpy188I	TCNGA	2 cut(s)	324, 336
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	3 cut(s)	30, 219, 413
HpyAV	CCTTC	2 cut(s)	130, 359
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	4 cut(s)	197, 224, 352, 407
HpyF3I	CTNAG	3 cut(s)	164, 323, 335
Hsp92II	CATG	3 cut(s)	172, 217, 411
Kzo9I	GATC	2 cut(s)	180, 382
LmnI	GCTCC	1 cut(s)	378
LpnPI	CCDG	1 cut(s)	346
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	2 cut(s)	386, 427
MalI	GATC	2 cut(s)	182, 384
MboI	GATC	2 cut(s)	180, 382
MboII	GAAGA	2 cut(s)	128, 323
MfeI	CAATTG	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	85, 372
MluCI	AATT	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	5 cut(s)	67, 112, 213, 253, 318
Mph1103I	ATGCAT	1 cut(s)	409
MseI	TTAA	2 cut(s)	54, 347
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	423
MunI	CAATTG	1 cut(s)	39
NciI	CCSGG	1 cut(s)	423
NdeII	GATC	2 cut(s)	180, 382
NlaIII	CATG	3 cut(s)	172, 217, 411
NlaIV	GGNNCC	2 cut(s)	82, 283
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	2 cut(s)	172, 411
PfeI	GAWTC	1 cut(s)	328
PflMI	CCANNNNNTGG	1 cut(s)	316
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	82, 283
RsaI	GTAC	2 cut(s)	220, 240
RsaNI	GTAC	2 cut(s)	219, 239
SaqAI	TTAA	2 cut(s)	54, 347
Sau3AI	GATC	2 cut(s)	180, 382
ScaI	AGTACT	1 cut(s)	240
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	423
SduI	GDGCHC	2 cut(s)	85, 372
SetI	ASST	3 cut(s)	78, 205, 391
SfaNI	GCATC	1 cut(s)	149
SfcI	CTRYAG	1 cut(s)	413
Sse9I	AATT	1 cut(s)	39
SspI	AATATT	1 cut(s)	305
SspMI	CTAG	2 cut(s)	386, 427
StyD4I	CCNGG	1 cut(s)	421
TaaI	ACNGT	1 cut(s)	160
TasI	AATT	1 cut(s)	39
TatI	WGTACW	2 cut(s)	218, 238
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	54, 347
Tru9I	TTAA	2 cut(s)	54, 347
TscAI	CASTG	1 cut(s)	359
TspGWI	ACGGA	2 cut(s)	128, 242
TspRI	CASTG	1 cut(s)	359
Van91I	CCANNNNNTGG	1 cut(s)	316
XceI	RCATGY	2 cut(s)	172, 411
XmiI	GTMKAC	2 cut(s)	29, 412
XspI	CTAG	2 cut(s)	386, 427
ZrmI	AGTACT	1 cut(s)	240
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.