Rh5AG317600

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0014746
Physical Location & Seq
Reverse (-)
46750067 .. 46750852
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG317600.1

Sequence Viewer

Length: 327 bp
ATGGAGGGTATCAAGGGTGGTGTTACATACGTGATTATGGATAACTTGGTAGTGAAGCCTATATCTACCATATCAATTGTAGATGTGCTTAAAGAGTTGAATGTTATGGAGGTTGGTGCCCTTGAACAGAAGTTGGTTAGTCTTGACACGGAAGACGGGCTAAAGTTGGTGAAGGCATCTTTGGAGTCAAATACAGTTCTCAGCATGTATGCCTTGGCTTCAGGTTTGCACTACCTCTATTTCTCATGTGTACTGCAACGGATATGGCAGTACTATGTGGTGGTAATGGGGAGGGTTGTTATTCAAAATATGGTTCCTATCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

108

Amino Acids

12.03

Weight (kDa)

5.55

Isoelectric Point (pI)

21.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 4 - 73 3.9e-08 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 2 cut(s) 252, 272
AgsI TTSAA 3 cut(s) 100, 125, 305
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AsuHPI GGTGA 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 121
BanI GGYRCC 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 159
BmcAI AGTACT 1 cut(s) 272
BmiI GGNNCC 2 cut(s) 118, 315
BmsI GCATC 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 213
BseMII CTCAG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 121
BshNI GGYRCC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 121
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 118, 315
BspT107I GGYRCC 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 196
BstBAI YACGTR 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 200
BstNSI RCATGY 1 cut(s) 208
BstSLI GKGCMC 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 159
Csp6I GTAC 2 cut(s) 251, 271
CviAII CATG 2 cut(s) 205, 246
CviJI RGCY 3 cut(s) 58, 160, 218
CviKI_1 RGCY 3 cut(s) 58, 160, 218
CviQI GTAC 2 cut(s) 251, 271
DdeI CTNAG 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 2 cut(s) 208, 249
FatI CATG 2 cut(s) 204, 245
Hin1II CATG 2 cut(s) 208, 249
HinfI GANTC 1 cut(s) 185
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 251
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 2 cut(s) 229, 256
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 2 cut(s) 208, 249
LpnPI CCDG 1 cut(s) 207
LweI GCATC 1 cut(s) 185
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 22
MboII GAAGA 1 cut(s) 164
MfeI CAATTG 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 1 cut(s) 75
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 3 cut(s) 103, 245, 285
MseI TTAA 1 cut(s) 90
MunI CAATTG 1 cut(s) 75
NlaIII CATG 2 cut(s) 208, 249
NlaIV GGNNCC 2 cut(s) 118, 315
NspI RCATGY 1 cut(s) 208
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Ppu21I YACGTR 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 118, 315
RsaI GTAC 2 cut(s) 252, 272
RsaNI GTAC 2 cut(s) 251, 271
SaqAI TTAA 1 cut(s) 90
ScaI AGTACT 1 cut(s) 272
SchI GAGTC 1 cut(s) 194
SduI GDGCHC 1 cut(s) 121
SetI ASST 4 cut(s) 33, 114, 226, 237
SfaNI GCATC 1 cut(s) 185
Sse9I AATT 1 cut(s) 75
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 33
TasI AATT 1 cut(s) 75
TatI WGTACW 2 cut(s) 250, 270
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TspGWI ACGGA 2 cut(s) 164, 274
XceI RCATGY 1 cut(s) 208
ZrmI AGTACT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.