RLG00000001292

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014746
Physical Location & Seq
Forward (+)
13623101 .. 13623809
709 bp
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UTR
Exon/CDS
Intron
RLM00000001292

Sequence Viewer

Length: 363 bp
ATGAATCCTCCTCTTGGAGAAATGCTGATTGGAGCTGATCAACCTTGGTTGGATTTTGTTGTTGCTGCTTGCAATGTCTACTGGAGAAGCGTTGTGAGCAATGGAGGGTACGTCAAGGGTGGTGTTACATACTTGATTATGGATAACTTGGTAGTGAAGCCTATGTCTACCGTATCAATTGTAGATGTCCTTAAAGAGTTGAATGTTATGGAGGTTGGTGTCCTTGAACAGAAGTTGGTTGGTCTTGGCACGGAAGAGGGGCTAAAGTTGGTGAAGGCATCTTTGGAGTCAAATACAGTTCTCAGCAATATATTCCTTGGTAATGAACTGCATAAATTACGTTTCAACTCTGGTGCTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

121

Amino Acids

13.08

Weight (kDa)

5.02

Isoelectric Point (pI)

22.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 33 - 109 1.7e-12 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 78, 167
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 3 cut(s) 202, 227, 346
AjuI GAANNNNNNNTTGG 4 cut(s) 12, 44, 266, 298
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 283
BbvI GCAGC 1 cut(s) 52
BclI TGATCA 1 cut(s) 37
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmsI GCATC 1 cut(s) 287
BpmI CTGGAG 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 44, 316
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 86
Bse3DI GCAATG 2 cut(s) 79, 106
BseDI CCNNGG 2 cut(s) 44, 316
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMI GCAATG 2 cut(s) 79, 106
BseMII CTCAG 1 cut(s) 316
BseNI ACTGG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 14
Bsp143I GATC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 315
BsrDI GCAATG 2 cut(s) 79, 106
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 44, 316
BssMI GATC 1 cut(s) 37
BssT1I CCWWGG 2 cut(s) 44, 316
Bst4CI ACNGT 2 cut(s) 172, 298
Bst6I CTCTTC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 302
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 109
CviJI RGCY 3 cut(s) 35, 160, 262
CviKI_1 RGCY 3 cut(s) 35, 160, 262
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 1 cut(s) 302
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 2 cut(s) 44, 316
EcoT14I CCWWGG 2 cut(s) 44, 316
ErhI CCWWGG 2 cut(s) 44, 316
FaiI YATR 6 cut(s) 130, 140, 164, 209, 311, 333
FbaI TGATCA 1 cut(s) 37
FblI GTMKAC 2 cut(s) 78, 167
Fnu4HI GCNGC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 103
HinfI GANTC 2 cut(s) 4, 287
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 2 cut(s) 79, 168
Hpy8I GTNNAC 2 cut(s) 79, 168
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 2 cut(s) 172, 298
HpyCH4IV ACGT 2 cut(s) 111, 340
HpyCH4V TGCA 2 cut(s) 72, 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 1 cut(s) 302
HpySE526I ACGT 2 cut(s) 111, 340
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 2 cut(s) 67, 336
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 287
MaeII ACGT 2 cut(s) 111, 340
MaeIII GTNAC 1 cut(s) 124
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 1 cut(s) 266
MfeI CAATTG 1 cut(s) 177
MluCI AATT 2 cut(s) 177, 335
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 5 cut(s) 18, 21, 98, 205, 250
MseI TTAA 1 cut(s) 192
MunI CAATTG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 96
NdeII GATC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 1 cut(s) 37
SchI GAGTC 1 cut(s) 296
SetI ASST 5 cut(s) 37, 46, 114, 216, 343
SfaNI GCATC 1 cut(s) 287
Sse9I AATT 2 cut(s) 177, 335
StyI CCWWGG 2 cut(s) 44, 316
TaaI ACNGT 2 cut(s) 172, 298
TaiI ACGT 2 cut(s) 114, 343
TasI AATT 2 cut(s) 177, 335
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 2 cut(s) 17, 339
TspGWI ACGGA 1 cut(s) 266
XmiI GTMKAC 2 cut(s) 78, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.