Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002367

Physical Location & Seq

Genomic Coordinates Reverse (-)

67575980 .. 67578280

Gene Structure 2301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33832

Sequence Viewer

CDS Protein Promoter (2k)

Length: 147 bp

ATGGTTGGGTCTGAAGTATATTCATCAGAAGTTAAGAAAACAGAGGTACTGATGGAAAATTTTAGACGGGCTATTGATCTACTTATCAAGGAAAATAAAGAGGTCTATGAAGGAGAGGTGACAGAACTAACACTAGAAGAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000491 GO:0000492 GO:0000785 GO:0000790 GO:0000812 GO:0002682 GO:0002831 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009888 GO:0009889 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010604 GO:0010628 GO:0010755 GO:0010756 GO:0010941 GO:0010954 GO:0016043 GO:0016363 GO:0016462 GO:0016569 GO:0016570 GO:0016573 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0030162 GO:0031011 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032270 GO:0032392 GO:0032502 GO:0032508 GO:0032991 GO:0033202 GO:0034399 GO:0034622 GO:0034708 GO:0035097 GO:0035267 GO:0036211 GO:0042623 GO:0042981 GO:0043067 GO:0043138 GO:0043140 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043900 GO:0043933 GO:0043967 GO:0043968 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0045088 GO:0045862 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048856 GO:0050776 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070035 GO:0070603 GO:0070613 GO:0071103 GO:0071339 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080134 GO:0097255 GO:0097346 GO:0140097 GO:1900150 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1903317 GO:1903319 GO:1903506 GO:1904949 GO:1990234 GO:2000072 GO:2000112 GO:2000269 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

TIP49

Protein Analysis

48

Amino Acids

5.58

Weight (kDa)

4.43

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP49	PF06068	1 - 47	6.9e-17	TIP49 P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22330
fragaria_vesca	FvH4_2g15320 FvH4_3g34140
malus_domestica	MD03G1150000.v1.1 MD11G1168700.v1.1
prunus_persica	Prupe.6G137000_v2.0.a1 Prupe.6G137000_v2.0.a1
pyrus_communis	pycom03g10400 pycom11g14180
rosa_chinensis	RchiOBHm_Chr2g0115061 RchiOBHm_Chr5g0061781 RchiOBHm_Chr5g0061991 RchiOBHm_Chr6g0278081
rosa_laevigata	RLG00000013241 RLG00000035053 RLG00000035505
rosa_multiflora	Rmu_sc0003709.1_g000012
rosa_roxburghii	Rroxscaffold_1G00018950 Rroxscaffold_2G00125100 Rroxscaffold_2G00125770 Rroxscaffold_2G00125780 Rroxscaffold_7G00190530
rosa_rugosa	Rorug05G0343700 Rorug05G0343800 Rorug05G0343800 Rorug05G0345300 Rorug06G0114600.1 Rorug06G0114700
rosa_samantha	Rh2AG251400 Rh2CG256000 Rh2DG259300 Rh5AG404600 Rh5AG406600 Rh5BG417700 Rh5CG442100 Rh5DG431800 Rh6AG224500 Rh6BG228500 Rh6CG230900 Rh6DG222000
rosa_wichuraiana	Rw5G038010 Rw6G019600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	48
ApoI	RAATTY	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	130
BccI	CCATC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	76
BssMI	GATC	1 cut(s)	76
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	47
CviJI	RGCY	1 cut(s)	71
CviKI_1	RGCY	1 cut(s)	71
CviQI	GTAC	1 cut(s)	47
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	33
FaiI	YATR	2 cut(s)	19, 108
FspBI	CTAG	1 cut(s)	134
FspEI	CC	8 cut(s)	29, 38, 52, 53, 74, 86, 96, 101
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	13, 28
HpyAV	CCTTC	1 cut(s)	104
Kzo9I	GATC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MluCI	AATT	1 cut(s)	58
MnlI	CCTC	3 cut(s)	37, 94, 109
MseI	TTAA	1 cut(s)	33
NdeII	GATC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	118
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	76
SetI	ASST	4 cut(s)	48, 105, 120, 146
SgeI	CNNG	2 cut(s)	80, 100
Sse9I	AATT	1 cut(s)	58
SspMI	CTAG	1 cut(s)	134
TasI	AATT	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	12, 123
XapI	RAATTY	1 cut(s)	58
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.