RLG00000035053

Belongs to the RuvB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002367
Physical Location & Seq
Reverse (-)
59870532 .. 59873764
3233 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035053

Sequence Viewer

Length: 366 bp
ATGGATGAGGTGAAAATGGAAGAGGTTCAGTCAACTACCAAGAAGAAGTGCATCGCTACTCGCACCCACACCAAAGGCCTTGGTCTTGAGTGGTTTCCACCTGGATCACTGAGACTGACAATGTTATGTTCCATTCCATTCTGCCCAATGTTTGGGTCTGAAGGATATTCATCAGAAGTTGAGATAACAAGGACCTCTGTTATCTCAACTTCTGATGAATATCCTTCAGAAGGCTCTAATGGAAAAGTGACAGAACTAACACCAGAAGGAACGGATAGTATTACAGGTGACTATGGTAAAAGCATTAGCCATGTGGGCCTTGAACTTTATAATTCTTGCTGCAACAAGATTTTTGCAAGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000228 GO:0000491 GO:0000492 GO:0000785 GO:0000790 GO:0000812 GO:0002682 GO:0002831 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009888 GO:0009889 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010604 GO:0010628 GO:0010755 GO:0010756 GO:0010941 GO:0010954 GO:0016043 GO:0016363 GO:0016462 GO:0016569 GO:0016570 GO:0016573 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0030162 GO:0031011 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032270 GO:0032392 GO:0032502 GO:0032508 GO:0032991 GO:0033202 GO:0034399 GO:0034622 GO:0034708 GO:0035097 GO:0035267 GO:0036211 GO:0042623 GO:0042981 GO:0043067 GO:0043138 GO:0043140 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043900 GO:0043933 GO:0043967 GO:0043968 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0045088 GO:0045862 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048856 GO:0050776 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070035 GO:0070603 GO:0070613 GO:0071103 GO:0071339 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080134 GO:0097255 GO:0097346 GO:0140097 GO:1900150 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1903317 GO:1903319 GO:1903506 GO:1904949 GO:1990234 GO:2000072 GO:2000112 GO:2000269 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
TIP49

Protein Analysis

122

Amino Acids

13.19

Weight (kDa)

4.98

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 330
AccB7I CCANNNNNTGG 1 cut(s) 152
AclWI GGATC 1 cut(s) 112
AcuI CTGAAG 2 cut(s) 180, 210
AfiI CCNNNNNNNGG 2 cut(s) 152, 230
AgsI TTSAA 1 cut(s) 323
AjnI CCWGG 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 1 cut(s) 112
AoxI GGCC 2 cut(s) 76, 316
ApeKI GCWGC 1 cut(s) 339
Asp700I GAANNNNTTC 1 cut(s) 24
AspS9I GGNCC 2 cut(s) 192, 316
AsuHPI GGTGA 2 cut(s) 22, 299
AvaII GGWCC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 326
BciT130I CCWGG 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 106
BglI GCCNNNNNGGC 1 cut(s) 315
BisI GCNGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 341
Bme1390I CCNGG 1 cut(s) 102
Bme18I GGWCC 1 cut(s) 192
BmgT120I GGNCC 2 cut(s) 192, 316
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 107
BsaBI GATNNNNATC 2 cut(s) 169, 219
BsaJI CCNNGG 1 cut(s) 79
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 230
Bse8I GATNNNNATC 2 cut(s) 169, 219
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 2 cut(s) 169, 219
BseLI CCNNNNNNNGG 2 cut(s) 152, 230
BseMII CTCAG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 326
BshFI GGCC 2 cut(s) 78, 318
BslI CCNNNNNNNGG 2 cut(s) 152, 230
BsmAI GTCTC 1 cut(s) 106
BsnI GGCC 2 cut(s) 78, 318
Bsp143I GATC 1 cut(s) 104
BspANI GGCC 2 cut(s) 78, 318
BspCNI CTCAG 1 cut(s) 102
BspPI GGATC 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 1 cut(s) 104
BssT1I CCWWGG 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 110
BstENI CCTNNNNNAGG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 107
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 1 cut(s) 104
BstMWI GCNNNNNNNGC 1 cut(s) 315
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 326
BsuRI GGCC 2 cut(s) 78, 318
BtgZI GCGATG 1 cut(s) 37
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 192, 316
CviAII CATG 1 cut(s) 311
CviJI RGCY 4 cut(s) 78, 234, 309, 318
CviKI_1 RGCY 4 cut(s) 78, 234, 309, 318
DdeI CTNAG 1 cut(s) 110
DpnI GATC 1 cut(s) 106
DpnII GATC 1 cut(s) 104
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 79
Eco147I AGGCCT 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 192
Eco57I CTGAAG 2 cut(s) 180, 210
EcoNI CCTNNNNNAGG 1 cut(s) 228
EcoO109I RGGNCCY 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 1 cut(s) 314
FaiI YATR 4 cut(s) 127, 294, 312, 330
FatI CATG 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 340
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 340
GluI GCNGC 1 cut(s) 340
HaeIII GGCC 2 cut(s) 78, 318
Hin1II CATG 1 cut(s) 314
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HphI GGTGA 2 cut(s) 22, 299
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 4 cut(s) 160, 175, 214, 229
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 33
HpyAV CCTTC 4 cut(s) 155, 224, 234, 260
HpyCH4V TGCA 3 cut(s) 51, 342, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 315
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 1 cut(s) 314
Kzo9I GATC 1 cut(s) 104
LpnPI CCDG 4 cut(s) 87, 114, 270, 276
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 1 cut(s) 60
MaeIII GTNAC 2 cut(s) 247, 287
MalI GATC 1 cut(s) 106
MboI GATC 1 cut(s) 104
MboII GAAGA 2 cut(s) 32, 55
MluCI AATT 1 cut(s) 331
MnlI CCTC 2 cut(s) 16, 205
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 1 cut(s) 364
MspR9I CCNGG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 315
NdeII GATC 1 cut(s) 104
NlaIII CATG 1 cut(s) 314
NmuCI GTSAC 2 cut(s) 247, 287
PceI AGGCCT 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 24
PflMI CCANNNNNTGG 1 cut(s) 152
PkrI GCNGC 1 cut(s) 341
PpuMI RGGWCCY 1 cut(s) 192
PsiI TTATAA 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspPI GGNCC 2 cut(s) 192, 316
PspPPI RGGWCCY 1 cut(s) 192
SaqAI TTAA 1 cut(s) 364
SatI GCNGC 1 cut(s) 340
Sau3AI GATC 1 cut(s) 104
Sau96I GGNCC 2 cut(s) 192, 316
ScrFI CCNGG 1 cut(s) 102
SetI ASST 5 cut(s) 12, 27, 103, 197, 289
SfaNI GCATC 1 cut(s) 60
SinI GGWCC 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 331
SseBI AGGCCT 1 cut(s) 78
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 100
StyI CCWWGG 1 cut(s) 79
TasI AATT 1 cut(s) 331
Tru1I TTAA 1 cut(s) 364
Tru9I TTAA 1 cut(s) 364
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 2 cut(s) 247, 287
TseI GCWGC 1 cut(s) 339
Tsp45I GTSAC 2 cut(s) 247, 287
TspDTI ATGAA 2 cut(s) 159, 231
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 1 cut(s) 114
Van91I CCANNNNNTGG 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 192
XagI CCTNNNNNAGG 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.