Rorug05G0343700

Belongs to the RuvB family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
42194131 .. 42231128
36998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0343700.1

Sequence Viewer

Length: 1125 bp
ATGCAGAATCTGCACCGTCTTATATCTCGTCTTTCCTCAACTTCAATCTGCAAAAGCACGACTACGACAGGGTTTCTGGGGGAGAAGAGCAACGCCAGTTTGGGAAACAATGGTGTTGAAGCTTGTAAGCTTATCAGCTCCCGATTTTTGTCTTTTCAATCTGGTGGTGATGGTCAAAATGATGGTAACAGTGGGTGGGATAAACCTGCGGCGGGAACATTTGGCAATAATGCATCAGATAATTTGGGGTGGGATTCTACATCGTCGTGGTCGCTTGGACTGACCAAGGAGCATTTTGATGGGGAGGTGGTGGGGCGACGAACGAGCGGAGATGAGACTCCCCAGTCTGCAGTCATCTCTGGTTTGCAGGAGATTGAGGATAGAATAAAGGAATTGGAGGCAGAGAACCGGAAAAGTAAGAGGTTTGTTGATGGATGGGGAGAGAGATTGAAAGAGATAAGTGTGCTGATGAAGCAAGTGCGCGAACCGGGTGCAAGAGGGTCTTATCTCAAGGACTCGGAAAAGGCTGAGATGTATCGGTTGCACAAGGAAAACCCTGATGTTTACACTGTTGAGCGCCTGGCCAAGGATTATAGGATTATGAGGCAGAGAGTGCATGCCATTCTTTGGCTGAAGGAGCTTCAGGAGGAAGAGGAGAAGAAGCTTGGTCGTCCCTTAGATGATTCTGTTGAGCTCCTGCTTGACAGCTTTCCTGAATTTTTCAATTCCCATGACCGTGAATTCCATGTTGCATCGCTTCCTTACAAACCTGACTTCAAGGTTATGCCAGAGGGTTGGGATGGTACCACCAGAGATTTGGATGAAGTCCACTATGAGATCTCCAAGAAGGAAGATGAGATGCTGTATCAAGAATTTGTCCAGAGGATGAACTTCAACAAAATGAAAATGAAAGGAGAGGTTTTCCACCACAAGTATAGTCGTCGTCGCTCTGCAGATGGGTGGAATTTCACGGTGGAGAAAATGGGACCCAAAGGAAAGTGTGGAGGTGGTGGTGGCTGGAAGTTTGTCAGCCTGCCAAATGGTTCGAGCCGACCACTGAATGAAAAGGAGAAAATGTATGTGAAACGAGAAACTCCACGCCATCGTCGCAAGATCCTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000228 GO:0000491 GO:0000492 GO:0000785 GO:0000790 GO:0000812 GO:0002682 GO:0002831 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009888 GO:0009889 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010604 GO:0010628 GO:0010755 GO:0010756 GO:0010941 GO:0010954 GO:0016043 GO:0016363 GO:0016462 GO:0016569 GO:0016570 GO:0016573 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0030162 GO:0031011 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032270 GO:0032392 GO:0032502 GO:0032508 GO:0032991 GO:0033202 GO:0034399 GO:0034622 GO:0034708 GO:0035097 GO:0035267 GO:0036211 GO:0042623 GO:0042981 GO:0043067 GO:0043138 GO:0043140 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043900 GO:0043933 GO:0043967 GO:0043968 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0045088 GO:0045862 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048856 GO:0050776 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070035 GO:0070603 GO:0070613 GO:0071103 GO:0071339 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080134 GO:0097255 GO:0097346 GO:0140097 GO:1900150 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1903317 GO:1903319 GO:1903506 GO:1904949 GO:1990234 GO:2000072 GO:2000112 GO:2000269 GO:2001141
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

374

Amino Acids

42.8

Weight (kDa)

8.51

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-L20 PF12824 141 - 218 3e-06 Mitochondrial ribosomal protein subunit L20
Bot1p PF12298 169 - 277 5.3e-06 Eukaryotic mitochondrial regulator protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 214
Acc65I GGTACC 1 cut(s) 803
AccB1I GGYRCC 1 cut(s) 803
AccB7I CCANNNNNTGG 1 cut(s) 627
AccBSI CCGCTC 1 cut(s) 327
AccII CGCG 1 cut(s) 483
AciI CCGC 3 cut(s) 209, 212, 327
AclWI GGATC 1 cut(s) 1108
AcoI YGGCCR 1 cut(s) 582
AcsI RAATTY 4 cut(s) 716, 740, 872, 964
AcuI CTGAAG 2 cut(s) 626, 653
AfaI GTAC 1 cut(s) 805
AfiI CCNNNNNNNGG 3 cut(s) 212, 586, 627
AgsI TTSAA 7 cut(s) 45, 119, 158, 451, 724, 778, 895
AjnI CCWGG 1 cut(s) 579
AluBI AGCT 7 cut(s) 122, 130, 138, 640, 664, 694, 708
AluI AGCT 7 cut(s) 122, 130, 138, 640, 664, 694, 708
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 1 cut(s) 1108
AlwNI CAGNNNCTG 1 cut(s) 10
AoxI GGCC 1 cut(s) 582
ApoI RAATTY 4 cut(s) 716, 740, 872, 964
Asp718I GGTACC 1 cut(s) 803
AspLEI GCGC 2 cut(s) 483, 579
AspS9I GGNCC 1 cut(s) 986
AsuC2I CCSGG 1 cut(s) 489
AsuHPI GGTGA 1 cut(s) 179
AvaII GGWCC 1 cut(s) 986
BalI TGGCCA 1 cut(s) 584
BanI GGYRCC 1 cut(s) 803
BanII GRGCYC 1 cut(s) 696
Bbv12I GWGCWC 1 cut(s) 696
BccI CCATC 8 cut(s) 164, 176, 293, 425, 429, 794, 950, 1110
BcgI CGANNNNNNTGC 2 cut(s) 473, 507
BciT130I CCWGG 1 cut(s) 581
BcnI CCSGG 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 329
BfmI CTRYAG 2 cut(s) 348, 951
BfoI RGCGCY 1 cut(s) 580
BfuAI ACCTGC 1 cut(s) 214
BglII AGATCT 1 cut(s) 837
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 489, 581
Bme18I GGWCC 1 cut(s) 986
BmgT120I GGNCC 1 cut(s) 986
BmiI GGNNCC 3 cut(s) 805, 987, 988
BmrFI CCNGG 2 cut(s) 489, 581
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 3 cut(s) 242, 761, 849
BmuI ACTGGG 1 cut(s) 337
BpuEI CTTGAG 1 cut(s) 494
BpuMI CCSGG 1 cut(s) 489
BsaJI CCNNGG 2 cut(s) 285, 585
BsaWI WCCGGW 1 cut(s) 408
BsaXI ACNNNNNCTCC 2 cut(s) 1061, 1091
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 586, 627
Bse1I ACTGG 2 cut(s) 96, 343
BseBI CCWGG 1 cut(s) 581
BseDI CCNNGG 2 cut(s) 285, 585
BseGI GGATG 4 cut(s) 440, 805, 826, 891
BseLI CCNNNNNNNGG 3 cut(s) 212, 586, 627
BseMII CTCAG 1 cut(s) 519
BseNI ACTGG 2 cut(s) 96, 343
BseRI GAGGAG 1 cut(s) 668
Bsh1236I CGCG 1 cut(s) 483
BshFI GGCC 1 cut(s) 584
BshNI GGYRCC 1 cut(s) 803
BsiHKAI GWGCWC 1 cut(s) 696
BsiSI CCGG 2 cut(s) 409, 488
BslFI GGGAC 2 cut(s) 657, 999
BslI CCNNNNNNNGG 3 cut(s) 212, 586, 627
BsmAI GTCTC 1 cut(s) 329
BsmFI GGGAC 2 cut(s) 657, 999
BsnI GGCC 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 696
Bsp143I GATC 2 cut(s) 837, 1113
BspACI CCGC 3 cut(s) 209, 212, 327
BspANI GGCC 1 cut(s) 584
BspCNI CTCAG 1 cut(s) 520
BspFNI CGCG 1 cut(s) 483
BspLI GGNNCC 3 cut(s) 805, 987, 988
BspMAI CTGCAG 2 cut(s) 352, 955
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 1 cut(s) 1108
BspQI GCTCTTC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 803
BsrBI CCGCTC 1 cut(s) 327
BsrI ACTGG 2 cut(s) 96, 343
BssECI CCNNGG 2 cut(s) 285, 585
BssMI GATC 2 cut(s) 837, 1113
BssT1I CCWWGG 2 cut(s) 285, 585
Bst2UI CCWGG 1 cut(s) 581
Bst4CI ACNGT 5 cut(s) 17, 191, 571, 737, 973
Bst6I CTCTTC 2 cut(s) 80, 645
BstAPI GCANNNNNTGC 2 cut(s) 10, 613
BstC8I GCNNGC 2 cut(s) 618, 1034
BstDEI CTNAG 2 cut(s) 528, 676
BstENI CCTNNNNNAGG 1 cut(s) 584
BstF5I GGATG 4 cut(s) 440, 805, 826, 891
BstFNI CGCG 1 cut(s) 483
BstH2I RGCGCY 1 cut(s) 580
BstHHI GCGC 2 cut(s) 483, 579
BstKTI GATC 2 cut(s) 840, 1116
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 2 cut(s) 837, 1113
BstMWI GCNNNNNNNGC 5 cut(s) 10, 472, 613, 637, 1107
BstNI CCWGG 1 cut(s) 581
BstNSI RCATGY 1 cut(s) 620
BstSCI CCNGG 2 cut(s) 487, 579
BstSFI CTRYAG 2 cut(s) 348, 951
BstUI CGCG 1 cut(s) 483
BstX2I RGATCY 2 cut(s) 837, 1113
BstXI CCANNNNNNTGG 2 cut(s) 795, 817
BstYI RGATCY 2 cut(s) 837, 1113
BsuRI GGCC 1 cut(s) 584
BtgZI GCGATG 1 cut(s) 738
BtsCI GGATG 4 cut(s) 440, 805, 826, 891
BtsIMutI CAGTG 3 cut(s) 196, 567, 1055
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 2 cut(s) 618, 1034
CaiI CAGNNNCTG 1 cut(s) 10
CfoI GCGC 2 cut(s) 483, 579
Cfr13I GGNCC 1 cut(s) 986
Csp6I GTAC 1 cut(s) 804
CviAII CATG 4 cut(s) 617, 731, 746, 1122
CviQI GTAC 1 cut(s) 804
DdeI CTNAG 2 cut(s) 528, 676
DpnI GATC 2 cut(s) 839, 1115
DpnII GATC 2 cut(s) 837, 1113
DrdI GACNNNNNNGTC 1 cut(s) 343
DseDI GACNNNNNNGTC 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 582
Eam1104I CTCTTC 2 cut(s) 80, 645
EarI CTCTTC 2 cut(s) 80, 645
Ecl136II GAGCTC 1 cut(s) 694
Eco130I CCWWGG 2 cut(s) 285, 585
Eco24I GRGCYC 1 cut(s) 696
Eco47I GGWCC 1 cut(s) 986
Eco53kI GAGCTC 1 cut(s) 694
Eco57I CTGAAG 2 cut(s) 626, 653
EcoICRI GAGCTC 1 cut(s) 694
EcoNI CCTNNNNNAGG 1 cut(s) 584
EcoO109I RGGNCCY 1 cut(s) 986
EcoRI GAATTC 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 579
EcoT14I CCWWGG 2 cut(s) 285, 585
EcoT22I ATGCAT 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 2 cut(s) 285, 585
FaeI CATG 4 cut(s) 620, 734, 749, 1125
FalI AAGNNNNNCTT 2 cut(s) 487, 519
FaqI GGGAC 2 cut(s) 657, 999
FatI CATG 4 cut(s) 616, 730, 745, 1121
FauI CCCGC 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 4 cut(s) 447, 812, 833, 898
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 1 cut(s) 210
GlaI GCGC 2 cut(s) 482, 578
GluI GCNGC 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 580
HaeIII GGCC 1 cut(s) 584
HapII CCGG 2 cut(s) 409, 488
HhaI GCGC 2 cut(s) 483, 579
Hin1II CATG 4 cut(s) 620, 734, 749, 1125
Hin6I GCGC 2 cut(s) 481, 577
HinP1I GCGC 2 cut(s) 481, 577
HindIII AAGCTT 3 cut(s) 120, 128, 662
HinfI GANTC 5 cut(s) 7, 254, 337, 515, 683
HpaII CCGG 2 cut(s) 409, 488
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 2 cut(s) 565, 829
Hpy188I TCNGA 2 cut(s) 238, 520
Hpy188III TCNNGA 5 cut(s) 141, 644, 713, 869, 880
Hpy8I GTNNAC 2 cut(s) 565, 829
Hpy99I CGWCG 5 cut(s) 268, 321, 945, 948, 1110
HpyAV CCTTC 2 cut(s) 628, 841
HpyCH4III ACNGT 5 cut(s) 17, 191, 571, 737, 973
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 472, 613, 637, 1107
HpyF3I CTNAG 2 cut(s) 528, 676
Hsp92II CATG 4 cut(s) 620, 734, 749, 1125
HspAI GCGC 2 cut(s) 481, 577
KflI GGGWCCC 1 cut(s) 986
KpnI GGTACC 1 cut(s) 807
Kzo9I GATC 2 cut(s) 837, 1113
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 4 cut(s) 143, 289, 637, 699
LweI GCATC 3 cut(s) 242, 761, 849
MaeIII GTNAC 1 cut(s) 185
MalI GATC 2 cut(s) 839, 1115
MbiI CCGCTC 1 cut(s) 327
MboI GATC 2 cut(s) 837, 1113
MboII GAAGA 4 cut(s) 97, 662, 670, 863
MflI RGATCY 2 cut(s) 837, 1113
MhlI GDGCHC 1 cut(s) 696
MlsI TGGCCA 1 cut(s) 584
MluCI AATT 7 cut(s) 241, 392, 716, 724, 740, 872, 964
MluNI TGGCCA 1 cut(s) 584
MlyI GAGTC 2 cut(s) 331, 509
Mox20I TGGCCA 1 cut(s) 584
Mph1103I ATGCAT 1 cut(s) 235
MscI TGGCCA 1 cut(s) 584
MslI CAYNNNNRTG 3 cut(s) 265, 297, 735
Msp20I TGGCCA 1 cut(s) 584
MspI CCGG 2 cut(s) 409, 488
MspR9I CCNGG 2 cut(s) 489, 581
MvaI CCWGG 1 cut(s) 581
MvnI CGCG 1 cut(s) 483
MwoI GCNNNNNNNGC 5 cut(s) 10, 472, 613, 637, 1107
NciI CCSGG 1 cut(s) 489
NdeII GATC 2 cut(s) 837, 1113
NlaIII CATG 4 cut(s) 620, 734, 749, 1125
NlaIV GGNNCC 3 cut(s) 805, 987, 988
NsiI ATGCAT 1 cut(s) 235
NspI RCATGY 1 cut(s) 620
PaeI GCATGC 1 cut(s) 620
PciSI GCTCTTC 1 cut(s) 80
PfeI GAWTC 3 cut(s) 7, 254, 683
PflMI CCANNNNNTGG 1 cut(s) 627
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 2 cut(s) 331, 509
PpsI GAGTC 2 cut(s) 331, 509
PpuMI RGGWCCY 1 cut(s) 986
Psp124BI GAGCTC 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 986
Psp6I CCWGG 1 cut(s) 579
PspGI CCWGG 1 cut(s) 579
PspN4I GGNNCC 3 cut(s) 805, 987, 988
PspPI GGNCC 1 cut(s) 986
PspPPI RGGWCCY 1 cut(s) 986
PstI CTGCAG 2 cut(s) 352, 955
PstNI CAGNNNCTG 1 cut(s) 10
PsuI RGATCY 2 cut(s) 837, 1113
RsaI GTAC 1 cut(s) 805
RsaNI GTAC 1 cut(s) 804
RseI CAYNNNNRTG 3 cut(s) 265, 297, 735
SacI GAGCTC 1 cut(s) 696
SapI GCTCTTC 1 cut(s) 80
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 2 cut(s) 837, 1113
Sau96I GGNCC 1 cut(s) 986
SchI GAGTC 2 cut(s) 331, 509
ScrFI CCNGG 2 cut(s) 489, 581
SduI GDGCHC 1 cut(s) 696
SfaNI GCATC 3 cut(s) 242, 761, 849
SfcI CTRYAG 2 cut(s) 348, 951
SinI GGWCC 1 cut(s) 986
SmiMI CAYNNNNRTG 3 cut(s) 265, 297, 735
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
SphI GCATGC 1 cut(s) 620
Sse9I AATT 7 cut(s) 241, 392, 716, 724, 740, 872, 964
SsiI CCGC 3 cut(s) 209, 212, 327
SstI GAGCTC 1 cut(s) 696
StyD4I CCNGG 2 cut(s) 487, 579
StyI CCWWGG 2 cut(s) 285, 585
TaaI ACNGT 5 cut(s) 17, 191, 571, 737, 973
TaqI TCGA 1 cut(s) 1046
TasI AATT 7 cut(s) 241, 392, 716, 724, 740, 872, 964
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 3 cut(s) 7, 254, 683
TscAI CASTG 3 cut(s) 196, 574, 1062
TspDTI ATGAA 6 cut(s) 485, 837, 902, 917, 923, 1077
TspRI CASTG 3 cut(s) 196, 574, 1062
Van91I CCANNNNNTGG 1 cut(s) 627
VpaK11BI GGWCC 1 cut(s) 986
XagI CCTNNNNNAGG 1 cut(s) 584
XapI RAATTY 4 cut(s) 716, 740, 872, 964
XceI RCATGY 1 cut(s) 620
XcmI CCANNNNNNNNNTGG 1 cut(s) 814
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.