Rroxscaffold_2G00125100

Belongs to the RuvB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002367
Physical Location & Seq
Reverse (-)
59695551 .. 59696703
1153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00125100.1

Sequence Viewer

Length: 513 bp
ATGGATGAGGTGAAAATGGAAGAGGTTCAGTCAACTACCAAGAAGAAGCGCATCGCTACTCGCACCCACACCAAAGGCCTTGGTCTTGAGGTTCCATTCTGCCCAATGGTTGGGTCTGAAGCATATTCATCAGAAGTTGAGATAACAGAGGTTCTAATGGAAAATTTTAGACGGGCTATTGATCTACTTATCAAGGAAAATAAAGAGGTGACAGAACCAACACCAGAAGGAACAGATAGTATTACAGGTGGCTATGGTAAAAGCATTAGCCATGTAATCATTGGATTAAAAACTGCCAAAGGAACCAAGCAACGGAGACCTGAGTTTTCTCCGGTGAGTTCCGAGAACGTGCGGTGGAACTGGTCCTCTTTTAAGTGGGCCGCGAGAGAGCAGAGCTTGAGTCAGAGTAGGGTGCTTCGCGTTCAGTTCCGTCATACTTTGAAAACCAAGATGGTCTCCGCTGGATTGGTTCGCAAAACCCTAACGGAGATGCAGATGGAAATAGGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000228 GO:0000491 GO:0000492 GO:0000785 GO:0000790 GO:0000812 GO:0002682 GO:0002831 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009888 GO:0009889 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010604 GO:0010628 GO:0010755 GO:0010756 GO:0010941 GO:0010954 GO:0016043 GO:0016363 GO:0016462 GO:0016569 GO:0016570 GO:0016573 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0030162 GO:0031011 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032270 GO:0032392 GO:0032502 GO:0032508 GO:0032991 GO:0033202 GO:0034399 GO:0034622 GO:0034708 GO:0035097 GO:0035267 GO:0036211 GO:0042623 GO:0042981 GO:0043067 GO:0043138 GO:0043140 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043900 GO:0043933 GO:0043967 GO:0043968 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0045088 GO:0045862 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048856 GO:0050776 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070035 GO:0070603 GO:0070613 GO:0071103 GO:0071339 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080134 GO:0097255 GO:0097346 GO:0140097 GO:1900150 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1903317 GO:1903319 GO:1903506 GO:1904949 GO:1990234 GO:2000072 GO:2000112 GO:2000269 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
TIP49

Protein Analysis

170

Amino Acids

19.25

Weight (kDa)

9.52

Isoelectric Point (pI)

57.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP49 PF06068 13 - 104 3.3e-16 TIP49 P-loop domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 110
AccII CGCG 2 cut(s) 383, 420
AciI CCGC 3 cut(s) 352, 381, 459
AcsI RAATTY 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 138
AfiI CCNNNNNNNGG 2 cut(s) 110, 312
AgsI TTSAA 1 cut(s) 442
AluBI AGCT 1 cut(s) 396
AluI AGCT 1 cut(s) 396
Alw26I GTCTC 2 cut(s) 310, 460
AoxI GGCC 2 cut(s) 76, 378
ApoI RAATTY 1 cut(s) 163
Asp700I GAANNNNTTC 1 cut(s) 24
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 2 cut(s) 363, 378
AsuHPI GGTGA 3 cut(s) 22, 220, 346
AvaII GGWCC 1 cut(s) 363
BccI CCATC 2 cut(s) 445, 490
BcoDI GTCTC 2 cut(s) 310, 460
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme18I GGWCC 1 cut(s) 363
BmgT120I GGNCC 2 cut(s) 363, 378
BmiI GGNNCC 2 cut(s) 93, 304
BmsI GCATC 2 cut(s) 60, 480
BpuEI CTTGAG 2 cut(s) 107, 418
BsaI GGTCTC 2 cut(s) 310, 460
BsaJI CCNNGG 1 cut(s) 79
BsaWI WCCGGW 1 cut(s) 331
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 312
Bse1I ACTGG 1 cut(s) 365
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 110, 312
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 365
Bsh1236I CGCG 2 cut(s) 383, 420
BshFI GGCC 2 cut(s) 78, 380
BsiSI CCGG 1 cut(s) 332
BslI CCNNNNNNNGG 2 cut(s) 110, 312
BsmAI GTCTC 2 cut(s) 310, 460
BsnI GGCC 2 cut(s) 78, 380
Bso31I GGTCTC 2 cut(s) 310, 460
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 3 cut(s) 352, 381, 459
BspANI GGCC 2 cut(s) 78, 380
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 2 cut(s) 383, 420
BspLI GGNNCC 2 cut(s) 93, 304
BspTNI GGTCTC 2 cut(s) 310, 460
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 321
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 2 cut(s) 383, 420
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 2 cut(s) 310, 460
BstMBI GATC 1 cut(s) 181
BstUI CGCG 2 cut(s) 383, 420
BsuRI GGCC 2 cut(s) 78, 380
BtgZI GCGATG 1 cut(s) 37
BtsCI GGATG 1 cut(s) 10
CfoI GCGC 1 cut(s) 51
Cfr13I GGNCC 2 cut(s) 363, 378
CviAII CATG 1 cut(s) 272
CviJI RGCY 6 cut(s) 78, 176, 252, 270, 380, 396
CviKI_1 RGCY 6 cut(s) 78, 176, 252, 270, 380, 396
DdeI CTNAG 1 cut(s) 321
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 79
Eco147I AGGCCT 1 cut(s) 78
Eco31I GGTCTC 2 cut(s) 310, 460
Eco47I GGWCC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 1 cut(s) 275
FaiI YATR 4 cut(s) 124, 255, 273, 435
FatI CATG 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 381
GlaI GCGC 1 cut(s) 50
GluI GCNGC 1 cut(s) 381
HaeIII GGCC 2 cut(s) 78, 380
HapII CCGG 1 cut(s) 332
HhaI GCGC 1 cut(s) 51
Hin1II CATG 1 cut(s) 275
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 1 cut(s) 400
HpaII CCGG 1 cut(s) 332
HphI GGTGA 3 cut(s) 22, 220, 346
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 4 cut(s) 118, 133, 343, 405
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 1 cut(s) 493
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 1 cut(s) 275
HspAI GCGC 1 cut(s) 49
Kzo9I GATC 1 cut(s) 181
LpnPI CCDG 6 cut(s) 231, 237, 333, 345, 346, 447
LweI GCATC 2 cut(s) 60, 480
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 2 cut(s) 32, 55
MluCI AATT 2 cut(s) 163, 508
MlyI GAGTC 1 cut(s) 409
MnlI CCTC 5 cut(s) 16, 82, 142, 199, 376
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 2 cut(s) 287, 372
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 1 cut(s) 332
MvnI CGCG 2 cut(s) 383, 420
NdeII GATC 1 cut(s) 181
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 2 cut(s) 93, 304
NmuCI GTSAC 1 cut(s) 208
PceI AGGCCT 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 24
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 1 cut(s) 382
PleI GAGTC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 408
PspN4I GGNNCC 2 cut(s) 93, 304
PspPI GGNCC 2 cut(s) 363, 378
SaqAI TTAA 2 cut(s) 287, 372
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 2 cut(s) 363, 378
SchI GAGTC 1 cut(s) 409
SetI ASST 9 cut(s) 12, 27, 93, 153, 210, 250, 322, 351, 398
SfaNI GCATC 2 cut(s) 60, 480
SinI GGWCC 1 cut(s) 363
SmlI CTYRAG 2 cut(s) 86, 397
SmoI CTYRAG 2 cut(s) 86, 397
Sse9I AATT 2 cut(s) 163, 508
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 3 cut(s) 352, 381, 459
StuI AGGCCT 1 cut(s) 78
StyI CCWWGG 1 cut(s) 79
TaiI ACGT 1 cut(s) 351
TasI AATT 2 cut(s) 163, 508
TauI GCSGC 1 cut(s) 383
Tru1I TTAA 2 cut(s) 287, 372
Tru9I TTAA 2 cut(s) 287, 372
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 117
TspGWI ACGGA 3 cut(s) 328, 419, 500
Van91I CCANNNNNTGG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 363
XapI RAATTY 1 cut(s) 163
XcmI CCANNNNNNNNNTGG 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.