RchiOBHm_Chr7g0182801

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
3921904 .. 3922650
747 bp
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UTR
Exon/CDS
Intron
PRQ16308

Sequence Viewer

Length: 225 bp
ATGTTTCTTTGTCAAAGATGGATGGCTGCAGCTTTGTCAAAACCGGTGTGCTGTAGTTGTTGTAAAGGAATGGTGGCTGCAACCTTGTCAAAATTGGTGGATATAGAGCTTCATATTTTCAAAAGTATTGTGCTGCAGCTGCAGTCAAATTTTGGTGTCTTGCAACTTTGCCAAGTTAGGTGTGCTGCCACTTCAGTTAAAGTATCAGATTCTCGGAATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.09

Weight (kDa)

9.01

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 148
AcuI CTGAAG 1 cut(s) 177
AgeI ACCGGT 1 cut(s) 43
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 3 cut(s) 32, 109, 139
AluI AGCT 3 cut(s) 32, 109, 139
ApeKI GCWGC 7 cut(s) 26, 29, 77, 133, 136, 139, 185
ApoI RAATTY 1 cut(s) 148
AsiGI ACCGGT 1 cut(s) 43
BbvI GCAGC 7 cut(s) 13, 41, 64, 120, 126, 148, 172
BccI CCATC 2 cut(s) 12, 16
BfmI CTRYAG 4 cut(s) 27, 52, 134, 140
BisI GCNGC 7 cut(s) 27, 30, 78, 134, 137, 140, 186
BlsI GCNGC 7 cut(s) 28, 31, 79, 135, 138, 141, 187
BsaWI WCCGGW 1 cut(s) 43
Bse118I RCCGGY 1 cut(s) 43
BseGI GGATG 1 cut(s) 27
BseXI GCAGC 7 cut(s) 13, 41, 64, 120, 126, 148, 172
BshTI ACCGGT 1 cut(s) 43
BsiSI CCGG 1 cut(s) 44
BspMAI CTGCAG 3 cut(s) 31, 138, 144
BsrFI RCCGGY 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 43
BstF5I GGATG 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstSFI CTRYAG 4 cut(s) 27, 52, 134, 140
BstV1I GCAGC 7 cut(s) 13, 41, 64, 120, 126, 148, 172
BtsCI GGATG 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 43
CspAI ACCGGT 1 cut(s) 43
CspCI CAANNNNNGTGG 2 cut(s) 78, 113
CviJI RGCY 5 cut(s) 26, 32, 77, 109, 139
CviKI_1 RGCY 5 cut(s) 26, 32, 77, 109, 139
Eco57I CTGAAG 1 cut(s) 177
FaiI YATR 2 cut(s) 104, 114
Fnu4HI GCNGC 7 cut(s) 27, 30, 78, 134, 137, 140, 186
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 7 cut(s) 27, 30, 78, 134, 137, 140, 186
GluI GCNGC 7 cut(s) 27, 30, 78, 134, 137, 140, 186
HapII CCGG 1 cut(s) 44
HinfI GANTC 1 cut(s) 209
HpaII CCGG 1 cut(s) 44
Hpy188I TCNGA 3 cut(s) 208, 216, 224
HpyCH4V TGCA 5 cut(s) 29, 80, 136, 142, 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
LpnPI CCDG 1 cut(s) 57
Lsp1109I GCAGC 7 cut(s) 13, 41, 64, 120, 126, 148, 172
MluCI AATT 2 cut(s) 92, 148
MseI TTAA 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 139
MspI CCGG 1 cut(s) 44
MwoI GCNNNNNNNGC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 209
PinAI ACCGGT 1 cut(s) 43
PkrI GCNGC 7 cut(s) 28, 31, 79, 135, 138, 141, 187
PstI CTGCAG 3 cut(s) 31, 138, 144
PvuII CAGCTG 1 cut(s) 139
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 7 cut(s) 27, 30, 78, 134, 137, 140, 186
SetI ASST 5 cut(s) 34, 86, 111, 141, 182
SfcI CTRYAG 4 cut(s) 27, 52, 134, 140
SgeI CNNG 4 cut(s) 56, 97, 172, 185
Sse9I AATT 2 cut(s) 92, 148
TasI AATT 2 cut(s) 92, 148
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseI GCWGC 7 cut(s) 26, 29, 77, 133, 136, 139, 185
TspDTI ATGAA 1 cut(s) 101
XapI RAATTY 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.