Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008157

Physical Location & Seq

Genomic Coordinates Forward (+)

8552242 .. 8553603

Gene Structure 1362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16897

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGAAGAAAGTTTCTCAACCATGGATAAAGACTCATGCTGGTTATTGGTCTCCCAAAGAGTCTTTGTTGTTTGATTCCAAGTTTGGCTTATATTTGAAGCGGACTGATGGGCCTTTCATTGATGAAGAATTCTATGGTACTAAGATTGCATCTTACAAAAAAGAGCTGTCTGCATTGGGGGTTATTGTTGAAGCTGAAAAGGGATGTCCCTTGATTGCCGGCCACCTTGATATTCATGATGAGACTGAAGCTTTTGTTCGGTTGTATAATTACTTGAGTGAGTTCCAGTGGGAGCCAGACACTGACGCTGCTCGAAGGATCTGGATTCCAAAAGGGGAGTGGGTTCGTGCTGATGAATGTGTTATTTATGACAAGGATGGGCTATTTGGTTTGCAGTTGACTGTTTTGGAGAAACATTATGAGCATAAACTTCTGCTTTTCTTCTCCAGTGCGTTTGGAGTTAAATCTCATCCTTCAGTTGATGATTACTTGAAGGTTTGGAAGGTTTGGGAAAGTTCTGGAAGTGCATTGTCGCATGCTGATTGTTGCAAGTTTTGGAGTTATATCTCGAAGCACTGGAATTCAAAGACAGAAAAGACTGTTGCTGATGCCTTGGTGAAAGTACCTGTCAGTTCTGGATCTGAAGGAATCTTGCTGTGCTACAAGTCTGATGTTTTCATTGCTGATGACCTTCATCTGAAGTATCTATTCGAACAGTCTTCTCCCGAGTCTATTTTTGTTTGGTACCCTCAACCAAGTTTGCCTTCCATTCCAAGATCCAAGTTGCTTGACATTTATCGAAGAATTGGTGTTCGCACTATATCTGAATCTGTACAAAAGGAAGAGGCGTCACTTGCAGATGATGTTGAAGCAGTCTCTTTGCCGAGGGAAAAGCTGATTAAGAAAGCGCTGTTCAGGCTGATTCTTGGTTTTCTTGCTGCTCCTCCCATGGAAATGGAAGCTGAGAAGAGGCTTGAAGCTGTTCAATTCCTTGTGAATGTTACTGTGGTAGTTACAGCTGAACCAATCTCTGTAAGCTATAGTCTACCTTTATCTTCTTGGAAAGTTTTGAATGTGAGAGGAAGCCAAAAGATACGTTTTGATAGAGACAATTCAAAGATCTTCACTCAGAAAATGGACAAGTCTGGAGGGCAGAAGAGTATGTTTGAGTTTGCTACTTCTTTCTCTCAAGCAATATCTGAGAGTGTGGTATGGGATAGTACGGATCATATAGATTCACTCTCTGAGCTGATCAAGGTGGCTGCTTTGCTAAACTTCAAAGAGGAAGCAGTTGATTCCTTGATGAAGTCAAAGAATTTGCAAATCTTCATGGAGGATGAGGAGTTTCTCAGGACTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

453

Amino Acids

51.64

Weight (kDa)

5.71

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008157)

Species	Orthologous Gene IDs
malus_domestica	MD06G1135000.v1.1
pyrus_communis	pycom06g12600 pycom06g12660
rosa_chinensis	RchiOBHm_Chr7g0182801 RchiOBHm_Chr7g0189211
rosa_multiflora	Rmu_sc0000239.1_g000045
rosa_roxburghii	Rroxscaffold_172G00445440 Rroxscaffold_2G00103850 Rroxscaffold_2G00125400 Rroxscaffold_2G00129600 Rroxscaffold_3G00220580 Rroxscaffold_3G00234810 Rroxscaffold_3G00243090 Rroxscaffold_3G00265650 Rroxscaffold_4G00330820 Rroxscaffold_6G00425560 Rroxscaffold_7G00169720 Rroxscaffold_7G00190290 Rroxscaffold_7G00204940 Rroxscaffold_7G00208230
rosa_samantha	Rh4BG005500 Rh4BG099100 Rh6BG169400 Rh7CG152700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	744
AccB1I	GGYRCC	1 cut(s)	744
AccI	GTMKAC	1 cut(s)	1045
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	4 cut(s)	326, 646, 771, 1233
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	3 cut(s)	128, 580, 1315
AcuI	CTGAAG	4 cut(s)	267, 459, 663, 719
AcyI	GRCGYC	1 cut(s)	848
AfaI	GTAC	5 cut(s)	139, 624, 746, 834, 1222
AfeI	AGCGCT	1 cut(s)	909
AjuI	GAANNNNNNNTTGG	2 cut(s)	748, 780
AluBI	AGCT	9 cut(s)	166, 194, 251, 895, 962, 980, 1019, 1038, 1249
AluI	AGCT	9 cut(s)	166, 194, 251, 895, 962, 980, 1019, 1038, 1249
Alw26I	GTCTC	4 cut(s)	54, 236, 880, 1101
AlwI	GGATC	4 cut(s)	326, 646, 771, 1233
AlwNI	CAGNNNCTG	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	725
Aor51HI	AGCGCT	1 cut(s)	909
AoxI	GGCC	2 cut(s)	110, 220
ApeKI	GCWGC	3 cut(s)	308, 938, 1262
ApoI	RAATTY	3 cut(s)	128, 580, 1315
Asp700I	GAANNNNTTC	1 cut(s)	981
Asp718I	GGTACC	1 cut(s)	744
AspLEI	GCGC	1 cut(s)	910
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	628
AsuII	TTCGAA	1 cut(s)	711
AvaI	CYCGRG	1 cut(s)	725
BanI	GGYRCC	1 cut(s)	744
BbsI	GAAGAC	1 cut(s)	711
BbvI	GCAGC	3 cut(s)	295, 925, 1249
BccI	CCATC	2 cut(s)	101, 371
BclI	TGATCA	1 cut(s)	1251
BcoDI	GTCTC	4 cut(s)	54, 236, 880, 1101
BfaI	CTAG	1 cut(s)	1360
BfmI	CTRYAG	1 cut(s)	1039
BfoI	RGCGCY	1 cut(s)	911
BglII	AGATCT	1 cut(s)	1119
BisI	GCNGC	3 cut(s)	309, 939, 1263
BlsI	GCNGC	3 cut(s)	310, 940, 1264
BmeT110I	CYCGRG	1 cut(s)	725
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	2 cut(s)	294, 746
BmsI	GCATC	2 cut(s)	158, 598
BpiI	GAAGAC	1 cut(s)	711
BpmI	CTGGAG	2 cut(s)	430, 1167
Bpu14I	TTCGAA	1 cut(s)	711
BpuEI	CTTGAG	2 cut(s)	295, 1173
BsaHI	GRCGYC	1 cut(s)	848
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	4 cut(s)	20, 612, 884, 948
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	3 cut(s)	286, 447, 581
Bse3DI	GCAATG	1 cut(s)	678
BseDI	CCNNGG	4 cut(s)	20, 612, 884, 948
BseGI	GGATG	4 cut(s)	209, 382, 469, 1342
BseMI	GCAATG	1 cut(s)	678
BseMII	CTCAG	4 cut(s)	954, 1142, 1191, 1236
BseNI	ACTGG	3 cut(s)	286, 447, 581
BseRI	GAGGAG	2 cut(s)	933, 1355
BseXI	GCAGC	3 cut(s)	295, 925, 1249
BshFI	GGCC	2 cut(s)	112, 222
BshNI	GGYRCC	1 cut(s)	744
BsiHKCI	CYCGRG	1 cut(s)	725
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	192
BsmAI	GTCTC	4 cut(s)	54, 236, 880, 1101
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	2 cut(s)	112, 222
Bso31I	GGTCTC	1 cut(s)	54
BsoBI	CYCGRG	1 cut(s)	725
Bsp119I	TTCGAA	1 cut(s)	711
Bsp1407I	TGTACA	1 cut(s)	832
Bsp143I	GATC	6 cut(s)	318, 638, 776, 1119, 1225, 1251
Bsp19I	CCATGG	2 cut(s)	20, 948
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	2 cut(s)	112, 222
BspCNI	CTCAG	5 cut(s)	955, 1141, 1192, 1237, 1362
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	294, 746
BspPI	GGATC	4 cut(s)	326, 646, 771, 1233
BspT104I	TTCGAA	1 cut(s)	711
BspT107I	GGYRCC	1 cut(s)	744
BspTNI	GGTCTC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	678
BsrFI	RCCGGY	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	832
BsrI	ACTGG	3 cut(s)	286, 447, 581
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	4 cut(s)	20, 612, 884, 948
BssMI	GATC	6 cut(s)	318, 638, 776, 1119, 1225, 1251
BssNI	GRCGYC	1 cut(s)	848
BssT1I	CCWWGG	3 cut(s)	20, 612, 948
Bst4CI	ACNGT	5 cut(s)	403, 601, 717, 1006, 1357
Bst6I	CTCTTC	3 cut(s)	837, 962, 1151
BstACI	GRCGYC	1 cut(s)	848
BstAUI	TGTACA	1 cut(s)	832
BstBI	TTCGAA	1 cut(s)	711
BstC8I	GCNNGC	2 cut(s)	220, 537
BstDEI	CTNAG	6 cut(s)	141, 963, 1128, 1200, 1245, 1349
BstDSI	CCRYGG	2 cut(s)	20, 948
BstF5I	GGATG	4 cut(s)	209, 382, 469, 1342
BstH2I	RGCGCY	1 cut(s)	911
BstHHI	GCGC	1 cut(s)	910
BstKTI	GATC	6 cut(s)	321, 641, 779, 1122, 1228, 1254
BstMAI	GTCTC	4 cut(s)	54, 236, 880, 1101
BstMBI	GATC	6 cut(s)	318, 638, 776, 1119, 1225, 1251
BstMWI	GCNNNNNNNGC	2 cut(s)	854, 916
BstNSI	RCATGY	1 cut(s)	539
BstSFI	CTRYAG	1 cut(s)	1039
BstV1I	GCAGC	3 cut(s)	295, 925, 1249
BstV2I	GAAGAC	1 cut(s)	711
BstX2I	RGATCY	4 cut(s)	318, 638, 776, 1119
BstXI	CCANNNNNNTGG	1 cut(s)	955
BstYI	RGATCY	4 cut(s)	318, 638, 776, 1119
BsuRI	GGCC	2 cut(s)	112, 222
BtgI	CCRYGG	2 cut(s)	20, 948
BtsCI	GGATG	4 cut(s)	209, 382, 469, 1342
BtsIMutI	CAGTG	4 cut(s)	293, 300, 454, 574
Cac8I	GCNNGC	2 cut(s)	220, 537
CaiI	CAGNNNCTG	1 cut(s)	302
CciI	TCATGA	1 cut(s)	235
CfoI	GCGC	1 cut(s)	910
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	2 cut(s)	314, 837
Csp6I	GTAC	5 cut(s)	138, 623, 745, 833, 1221
CviAII	CATG	6 cut(s)	21, 35, 236, 536, 949, 1330
CviQI	GTAC	5 cut(s)	138, 623, 745, 833, 1221
DdeI	CTNAG	6 cut(s)	141, 963, 1128, 1200, 1245, 1349
DpnI	GATC	6 cut(s)	320, 640, 778, 1121, 1227, 1253
DpnII	GATC	6 cut(s)	318, 638, 776, 1119, 1225, 1251
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	3 cut(s)	837, 962, 1151
EarI	CTCTTC	3 cut(s)	837, 962, 1151
Eco130I	CCWWGG	3 cut(s)	20, 612, 948
Eco31I	GGTCTC	1 cut(s)	54
Eco47III	AGCGCT	1 cut(s)	909
Eco57I	CTGAAG	4 cut(s)	267, 459, 663, 719
Eco88I	CYCGRG	1 cut(s)	725
EcoRI	GAATTC	2 cut(s)	128, 580
EcoT14I	CCWWGG	3 cut(s)	20, 612, 948
ErhI	CCWWGG	3 cut(s)	20, 612, 948
FaeI	CATG	6 cut(s)	24, 38, 239, 539, 952, 1333
FalI	AAGNNNNNCTT	4 cut(s)	71, 103, 748, 780
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	6 cut(s)	20, 34, 235, 535, 948, 1329
FbaI	TGATCA	1 cut(s)	1251
FblI	GTMKAC	1 cut(s)	1045
Fnu4HI	GCNGC	3 cut(s)	309, 939, 1263
FokI	GGATG	4 cut(s)	216, 389, 456, 1349
Fsp4HI	GCNGC	3 cut(s)	309, 939, 1263
FspBI	CTAG	1 cut(s)	1360
GlaI	GCGC	1 cut(s)	909
GluI	GCNGC	3 cut(s)	309, 939, 1263
GsuI	CTGGAG	2 cut(s)	430, 1167
HaeII	RGCGCY	1 cut(s)	911
HaeIII	GGCC	2 cut(s)	112, 222
HapII	CCGG	1 cut(s)	219
HgaI	GACGC	2 cut(s)	314, 837
HhaI	GCGC	1 cut(s)	910
Hin1I	GRCGYC	1 cut(s)	848
Hin1II	CATG	6 cut(s)	24, 38, 239, 539, 952, 1333
Hin6I	GCGC	1 cut(s)	908
HinP1I	GCGC	1 cut(s)	908
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HindIII	AAGCTT	1 cut(s)	249
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	1 cut(s)	628
Hpy166II	GTNNAC	2 cut(s)	399, 1046
Hpy188I	TCNGA	7 cut(s)	643, 670, 699, 826, 1131, 1201, 1246
Hpy188III	TCNNGA	8 cut(s)	236, 322, 519, 568, 636, 725, 1146, 1351
Hpy8I	GTNNAC	2 cut(s)	399, 1046
HpyAV	CCTTC	7 cut(s)	309, 483, 487, 496, 638, 701, 774
HpyCH4III	ACNGT	5 cut(s)	403, 601, 717, 1006, 1357
HpyCH4IV	ACGT	1 cut(s)	1096
HpyCH4V	TGCA	7 cut(s)	149, 173, 394, 527, 549, 857, 1321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	854, 916
HpyF3I	CTNAG	6 cut(s)	141, 963, 1128, 1200, 1245, 1349
HpySE526I	ACGT	1 cut(s)	1096
Hsp92I	GRCGYC	1 cut(s)	848
Hsp92II	CATG	6 cut(s)	24, 38, 239, 539, 952, 1333
HspAI	GCGC	1 cut(s)	908
KpnI	GGTACC	1 cut(s)	748
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	1251
Kzo9I	GATC	6 cut(s)	318, 638, 776, 1119, 1225, 1251
LmnI	GCTCC	2 cut(s)	292, 946
Lsp1109I	GCAGC	3 cut(s)	295, 925, 1249
LweI	GCATC	2 cut(s)	158, 598
MaeI	CTAG	1 cut(s)	1360
MaeII	ACGT	1 cut(s)	1096
MaeIII	GTNAC	3 cut(s)	849, 1000, 1012
MalI	GATC	6 cut(s)	320, 640, 778, 1121, 1227, 1253
MboI	GATC	6 cut(s)	318, 638, 776, 1119, 1225, 1251
MflI	RGATCY	4 cut(s)	318, 638, 776, 1119
MluCI	AATT	7 cut(s)	128, 268, 580, 804, 986, 1111, 1315
MlyI	GAGTC	3 cut(s)	25, 68, 737
MroNI	GCCGGC	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	981
MseI	TTAA	2 cut(s)	462, 900
MslI	CAYNNNNRTG	1 cut(s)	953
MspA1I	CMGCKG	1 cut(s)	1019
MspI	CCGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	854, 916
NaeI	GCCGGC	1 cut(s)	220
NcoI	CCATGG	2 cut(s)	20, 948
NdeII	GATC	6 cut(s)	318, 638, 776, 1119, 1225, 1251
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	6 cut(s)	24, 38, 239, 539, 952, 1333
NlaIV	GGNNCC	2 cut(s)	294, 746
NmeAIII	GCCGAG	1 cut(s)	909
NmuCI	GTSAC	1 cut(s)	849
NspI	RCATGY	1 cut(s)	539
NspV	TTCGAA	1 cut(s)	711
PaeI	GCATGC	1 cut(s)	539
PagI	TCATGA	1 cut(s)	235
PdiI	GCCGGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	981
PfeI	GAWTC	7 cut(s)	74, 325, 648, 827, 922, 1235, 1295
PkrI	GCNGC	3 cut(s)	310, 940, 1264
PleI	GAGTC	3 cut(s)	25, 67, 736
PpsI	GAGTC	3 cut(s)	25, 67, 736
PspN4I	GGNNCC	2 cut(s)	294, 746
PspPI	GGNCC	1 cut(s)	110
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	4 cut(s)	318, 638, 776, 1119
PvuII	CAGCTG	1 cut(s)	1019
RsaI	GTAC	5 cut(s)	139, 624, 746, 834, 1222
RsaNI	GTAC	5 cut(s)	138, 623, 745, 833, 1221
RseI	CAYNNNNRTG	1 cut(s)	953
SaqAI	TTAA	2 cut(s)	462, 900
SatI	GCNGC	3 cut(s)	309, 939, 1263
Sau3AI	GATC	6 cut(s)	318, 638, 776, 1119, 1225, 1251
Sau96I	GGNCC	1 cut(s)	110
SchI	GAGTC	3 cut(s)	25, 68, 737
SfaNI	GCATC	2 cut(s)	158, 598
SfcI	CTRYAG	1 cut(s)	1039
SfuI	TTCGAA	1 cut(s)	711
SmiMI	CAYNNNNRTG	1 cut(s)	953
SmlI	CTYRAG	2 cut(s)	274, 1188
SmoI	CTYRAG	2 cut(s)	274, 1188
SphI	GCATGC	1 cut(s)	539
Sse9I	AATT	7 cut(s)	128, 268, 580, 804, 986, 1111, 1315
SsiI	CCGC	1 cut(s)	100
SspMI	CTAG	1 cut(s)	1360
StyI	CCWWGG	3 cut(s)	20, 612, 948
TaaI	ACNGT	5 cut(s)	403, 601, 717, 1006, 1357
TaiI	ACGT	1 cut(s)	1099
TaqI	TCGA	4 cut(s)	313, 569, 711, 799
TasI	AATT	7 cut(s)	128, 268, 580, 804, 986, 1111, 1315
TatI	WGTACW	1 cut(s)	832
TfiI	GAWTC	7 cut(s)	74, 325, 648, 827, 922, 1235, 1295
Tru1I	TTAA	2 cut(s)	462, 900
Tru9I	TTAA	2 cut(s)	462, 900
TscAI	CASTG	4 cut(s)	293, 307, 454, 581
TseFI	GTSAC	1 cut(s)	849
TseI	GCWGC	3 cut(s)	308, 938, 1262
Tsp45I	GTSAC	1 cut(s)	849
TspDTI	ATGAA	9 cut(s)	17, 106, 138, 224, 369, 667, 683, 1318, 1319
TspGWI	ACGGA	1 cut(s)	1238
TspRI	CASTG	4 cut(s)	293, 307, 454, 581
XapI	RAATTY	3 cut(s)	128, 580, 1315
XceI	RCATGY	1 cut(s)	539
XcmI	CCANNNNNNNNNTGG	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	1045
XmnI	GAANNNNTTC	1 cut(s)	981
XspI	CTAG	1 cut(s)	1360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.