Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008157

Physical Location & Seq

Genomic Coordinates Forward (+)

65551497 .. 65572085

Gene Structure 20589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGTGGCTGCAACCTTGTCAAAATTGGTGGATACAAAGCTTCAGCTTTTCAAGAGTATTGTGCTGCCTCTGCAGGCAAAGTTTGGTGTCTTGCAACTTTGCCAAGTTAGGTGTGCTGCCACTTCAGTTAAAGAGTATCAGATTCTCGGGCTGCCTGACCTTTCTAGTAAGTGTCGCAAAGCTCTTTGCCGTCGCAAAAGTGGTCTGCGACGGCATTTTGCCGTGGCTAAAGATATTGGCGACGCCACCAACGGCGTCGAAGCTTTGCCGTCGCAGAGCCGTCGCAAATGCTTTTTTGCGACGGCAAAACAACTTTTCGCTACGGCGGCGCCTCAACGATTGTCGGCCACTTTTCGTGCGATTTTCCGACCACATTTCTGGCGATTTTCAGGCCATTTTTTCGACCAATTTTTCCAGCCAAATTTTTCTGCGACCTATTTCAAGATAAATTCGATCGTAGTTGGGAAACTCGGAGGTCAATATCCTACAATTCCTACCATTCGTGGCCCTTCTTTTCTAGAGTTAGTTTGGGAAGGACTTGGGCTTGGAGCGGGAGCTGCTATTGGAAACTGGAACAGGGAGAACGATAGTAAAAGACTGCTTCGGATAGGTGGACATTATGTACCTCATCATATGGATATAGCTCTGTATATCGACGAAGGCCCAGTTGCATTCGGTAAAGCCCAATACCGAAATAAACCAACCGAAAATTCGGTATACCGATCTGTCGGTTGGGCTTTTGACGGTACGGTTACGGTTGCGGATATGGGCTTACCGAGCAACTTCGGTTCGGTAGCGGTAGGCCCAAATTATGCTCGGTTTTGGGCCGAATCCAGCCCTAATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006399 GO:0006450 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051499 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_deacylase

Protein Analysis

282

Amino Acids

31.2

Weight (kDa)

9.95

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008157)

Species	Orthologous Gene IDs
malus_domestica	MD06G1135000.v1.1
pyrus_communis	pycom06g12600 pycom06g12660
rosa_chinensis	RchiOBHm_Chr7g0182801 RchiOBHm_Chr7g0189211
rosa_multiflora	Rmu_sc0000239.1_g000045
rosa_roxburghii	Rroxscaffold_172G00445440 Rroxscaffold_2G00103850 Rroxscaffold_2G00125400 Rroxscaffold_2G00129600 Rroxscaffold_3G00220580 Rroxscaffold_3G00234810 Rroxscaffold_3G00243090 Rroxscaffold_3G00265650 Rroxscaffold_4G00330820 Rroxscaffold_6G00425560 Rroxscaffold_7G00169720 Rroxscaffold_7G00190290 Rroxscaffold_7G00204940 Rroxscaffold_7G00208230
rosa_samantha	Rh4BG005500 Rh4BG099100 Rh6BG169400 Rh7CG152700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AccBSI	CCGCTC	1 cut(s)	551
AccI	GTMKAC	1 cut(s)	717
AciI	CCGC	4 cut(s)	326, 551, 761, 797
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	3 cut(s)	421, 448, 709
AcuI	CTGAAG	2 cut(s)	26, 108
AcyI	GRCGYC	3 cut(s)	243, 255, 329
AfaI	GTAC	2 cut(s)	624, 748
AgsI	TTSAA	2 cut(s)	52, 442
AjuI	GAANNNNNNNTTGG	2 cut(s)	694, 726
AluBI	AGCT	6 cut(s)	40, 46, 182, 263, 557, 644
AluI	AGCT	6 cut(s)	40, 46, 182, 263, 557, 644
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	6 cut(s)	345, 391, 505, 661, 802, 825
ApeKI	GCWGC	5 cut(s)	8, 64, 116, 151, 557
ApoI	RAATTY	3 cut(s)	421, 448, 709
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	4 cut(s)	506, 662, 803, 825
AvaI	CYCGRG	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	328
BbvI	GCAGC	4 cut(s)	51, 103, 138, 544
BceAI	ACGGC	8 cut(s)	174, 206, 227, 253, 264, 268, 318, 339
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciVI	GTATCC	1 cut(s)	25
BfaI	CTAG	3 cut(s)	165, 518, 847
BfmI	CTRYAG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	332
BfuI	GTATCC	1 cut(s)	25
BisI	GCNGC	6 cut(s)	9, 65, 117, 152, 327, 558
BlsI	GCNGC	6 cut(s)	10, 66, 118, 153, 328, 559
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	4 cut(s)	506, 662, 803, 825
BmiI	GGNNCC	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	659
BmuI	ACTGGG	1 cut(s)	659
BsaHI	GRCGYC	3 cut(s)	243, 255, 329
BsaJI	CCNNGG	1 cut(s)	222
Bse1I	ACTGG	2 cut(s)	575, 665
BseDI	CCNNGG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	575, 665
BseXI	GCAGC	4 cut(s)	51, 103, 138, 544
Bsh1285I	CGRYCG	1 cut(s)	456
BshFI	GGCC	6 cut(s)	347, 393, 507, 663, 804, 827
BshNI	GGYRCC	1 cut(s)	328
BsiEI	CGRYCG	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	671
BsnI	GGCC	6 cut(s)	347, 393, 507, 663, 804, 827
BsoBI	CYCGRG	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	453, 722
BspACI	CCGC	4 cut(s)	326, 551, 761, 797
BspANI	GGCC	6 cut(s)	347, 393, 507, 663, 804, 827
BspLI	GGNNCC	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	328
BsrBI	CCGCTC	1 cut(s)	551
BsrI	ACTGG	2 cut(s)	575, 665
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	2 cut(s)	453, 722
BssNAI	GTATAC	1 cut(s)	718
BssNI	GRCGYC	3 cut(s)	243, 255, 329
Bst1107I	GTATAC	1 cut(s)	718
Bst4CI	ACNGT	3 cut(s)	746, 751, 757
BstACI	GRCGYC	3 cut(s)	243, 255, 329
BstC8I	GCNNGC	1 cut(s)	75
BstDSI	CCRYGG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	2 cut(s)	456, 725
BstMBI	GATC	2 cut(s)	453, 722
BstMCI	CGRYCG	1 cut(s)	456
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 326, 557, 777
BstSFI	CTRYAG	1 cut(s)	71
BstV1I	GCAGC	4 cut(s)	51, 103, 138, 544
BstXI	CCANNNNNNTGG	1 cut(s)	378
BstZ17I	GTATAC	1 cut(s)	718
BsuI	GTATCC	1 cut(s)	25
BsuRI	GGCC	6 cut(s)	347, 393, 507, 663, 804, 827
BtgI	CCRYGG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	75
CfoI	GCGC	1 cut(s)	331
Cfr13I	GGNCC	4 cut(s)	506, 662, 803, 825
CseI	GACGC	2 cut(s)	244, 251
Csp6I	GTAC	2 cut(s)	623, 747
CspCI	CAANNNNNGTGG	2 cut(s)	9, 44
CviQI	GTAC	2 cut(s)	623, 747
DinI	GGCGCC	1 cut(s)	330
DpnI	GATC	2 cut(s)	455, 724
DpnII	GATC	2 cut(s)	453, 722
EaeI	YGGCCR	1 cut(s)	345
Eco57I	CTGAAG	2 cut(s)	26, 108
Eco88I	CYCGRG	1 cut(s)	146
EgeI	GGCGCC	1 cut(s)	330
EheI	GGCGCC	1 cut(s)	330
FaiI	YATR	8 cut(s)	621, 633, 635, 641, 651, 718, 767, 813
FauI	CCCGC	1 cut(s)	544
FauNDI	CATATG	1 cut(s)	633
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	6 cut(s)	9, 65, 117, 152, 327, 558
Fsp4HI	GCNGC	6 cut(s)	9, 65, 117, 152, 327, 558
FspBI	CTAG	3 cut(s)	165, 518, 847
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	6 cut(s)	9, 65, 117, 152, 327, 558
HaeII	RGCGCY	1 cut(s)	332
HaeIII	GGCC	6 cut(s)	347, 393, 507, 663, 804, 827
HgaI	GACGC	2 cut(s)	244, 251
HhaI	GCGC	1 cut(s)	331
Hin1I	GRCGYC	3 cut(s)	243, 255, 329
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HindIII	AAGCTT	2 cut(s)	38, 261
HinfI	GANTC	2 cut(s)	142, 830
Hpy166II	GTNNAC	2 cut(s)	614, 718
Hpy188I	TCNGA	4 cut(s)	141, 368, 473, 606
Hpy188III	TCNNGA	3 cut(s)	52, 442, 518
Hpy8I	GTNNAC	2 cut(s)	614, 718
Hpy99I	CGWCG	8 cut(s)	195, 213, 245, 260, 274, 285, 304, 659
HpyAV	CCTTC	3 cut(s)	519, 527, 653
HpyCH4III	ACNGT	3 cut(s)	746, 751, 757
HpyCH4V	TGCA	4 cut(s)	11, 73, 94, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 326, 557, 777
Hsp92I	GRCGYC	3 cut(s)	243, 255, 329
HspAI	GCGC	1 cut(s)	329
KasI	GGCGCC	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	453, 722
LmnI	GCTCC	2 cut(s)	548, 554
LpnPI	CCDG	8 cut(s)	59, 168, 364, 375, 428, 556, 562, 678
Lsp1109I	GCAGC	4 cut(s)	51, 103, 138, 544
MaeI	CTAG	3 cut(s)	165, 518, 847
MaeIII	GTNAC	1 cut(s)	751
MalI	GATC	2 cut(s)	455, 724
MbiI	CCGCTC	1 cut(s)	551
MboI	GATC	2 cut(s)	453, 722
MluCI	AATT	7 cut(s)	23, 407, 421, 448, 489, 709, 808
Mly113I	GGCGCC	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	4 cut(s)	78, 342, 467, 636
MseI	TTAA	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	671
MwoI	GCNNNNNNNGC	4 cut(s)	70, 326, 557, 777
NarI	GGCGCC	1 cut(s)	329
NdeI	CATATG	1 cut(s)	633
NdeII	GATC	2 cut(s)	453, 722
NlaIV	GGNNCC	1 cut(s)	330
PctI	GAATGC	1 cut(s)	671
PfeI	GAWTC	2 cut(s)	142, 830
PkrI	GCNGC	6 cut(s)	10, 66, 118, 153, 328, 559
Ple19I	CGATCG	1 cut(s)	456
PluTI	GGCGCC	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	4 cut(s)	506, 662, 803, 825
PstI	CTGCAG	1 cut(s)	75
PvuI	CGATCG	1 cut(s)	456
RsaI	GTAC	2 cut(s)	624, 748
RsaNI	GTAC	2 cut(s)	623, 747
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	6 cut(s)	9, 65, 117, 152, 327, 558
Sau3AI	GATC	2 cut(s)	453, 722
Sau96I	GGNCC	4 cut(s)	506, 662, 803, 825
SfcI	CTRYAG	1 cut(s)	71
SfoI	GGCGCC	1 cut(s)	330
Sse9I	AATT	7 cut(s)	23, 407, 421, 448, 489, 709, 808
SsiI	CCGC	4 cut(s)	326, 551, 761, 797
SspDI	GGCGCC	1 cut(s)	328
SspMI	CTAG	3 cut(s)	165, 518, 847
TaaI	ACNGT	3 cut(s)	746, 751, 757
TaqI	TCGA	4 cut(s)	258, 402, 452, 654
TasI	AATT	7 cut(s)	23, 407, 421, 448, 489, 709, 808
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	142, 830
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TseI	GCWGC	5 cut(s)	8, 64, 116, 151, 557
XapI	RAATTY	3 cut(s)	421, 448, 709
XbaI	TCTAGA	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	717
XspI	CTAG	3 cut(s)	165, 518, 847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.