Rroxscaffold_3G00220580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008157
Physical Location & Seq
Forward (+)
2902051 .. 2910950
8900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220580.1

Sequence Viewer

Length: 450 bp
ATGGCACTTATAGGTGCAGATTTTTGTGTGCATAGAGTAAGTGTCGCAAAACTCTTTGCCGTCGCAAAAGTGGTCTGCGACGGCATTTTGCCGTGGCTAAAGATATTGGCGACGCCACCAACGGCGTCGAAGCTTTGCCGTCGCAAATGCTTTTTTGCGACGGCAAAACAGCTTTTAGCTACGGCAGGCGCCGAAAATTCTAGTGTGCTGCAAGGTGTTTCGGCGGAGGTAACTCGGCGTCGTTTCGGAACACGGTGGTCATCTTGTACTACCTTCGGCGCTTCATTAGAGGCTTCCGAGATTAGTGCAAGGTGTTTAGATCGGGGAGCTTTGGAAGCAGTGTGTGGCCGAGGTGGCATGAGTAATGGTTGTATGGGTCGCAGAGGCTGTGGCGGCAGGGGTCGTGGCGGTACGGGTCTTAGTGGCTATGGCGGCGTGGTCGGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

15.41

Weight (kDa)

9.95

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 4 cut(s) 224, 393, 408, 432
AcoI YGGCCR 1 cut(s) 346
AcsI RAATTY 1 cut(s) 196
AcyI GRCGYC 4 cut(s) 113, 125, 189, 238
AfaI GTAC 2 cut(s) 268, 412
AluBI AGCT 4 cut(s) 133, 172, 179, 329
AluI AGCT 4 cut(s) 133, 172, 179, 329
AlwNI CAGNNNCTG 1 cut(s) 387
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 196
AspLEI GCGC 2 cut(s) 191, 281
BanI GGYRCC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 195
BceAI ACGGC 7 cut(s) 44, 76, 97, 123, 138, 177, 198
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BfaI CTAG 1 cut(s) 201
BfoI RGCGCY 2 cut(s) 192, 282
BglI GCCNNNNNGGC 1 cut(s) 354
BisI GCNGC 3 cut(s) 209, 394, 433
BlsI GCNGC 3 cut(s) 210, 395, 434
BmiI GGNNCC 1 cut(s) 190
BsaHI GRCGYC 4 cut(s) 113, 125, 189, 238
BsaJI CCNNGG 2 cut(s) 92, 349
BseDI CCNNGG 2 cut(s) 92, 349
BseXI GCAGC 1 cut(s) 195
BsgI GTGCAG 1 cut(s) 36
BshFI GGCC 1 cut(s) 348
BshNI GGYRCC 1 cut(s) 188
BsnI GGCC 1 cut(s) 348
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 4 cut(s) 224, 393, 408, 432
BspANI GGCC 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 190
BspT107I GGYRCC 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 92, 349
BssMI GATC 1 cut(s) 319
BssNI GRCGYC 4 cut(s) 113, 125, 189, 238
Bst4CI ACNGT 1 cut(s) 255
BstACI GRCGYC 4 cut(s) 113, 125, 189, 238
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 419
BstDSI CCRYGG 1 cut(s) 92
BstH2I RGCGCY 2 cut(s) 192, 282
BstHHI GCGC 2 cut(s) 191, 281
BstKTI GATC 1 cut(s) 322
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 4 cut(s) 335, 354, 393, 432
BstV1I GCAGC 1 cut(s) 195
BsuRI GGCC 1 cut(s) 348
BtgI CCRYGG 1 cut(s) 92
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 187
CaiI CAGNNNCTG 1 cut(s) 387
CfoI GCGC 2 cut(s) 191, 281
CseI GACGC 3 cut(s) 114, 121, 227
Csp6I GTAC 2 cut(s) 267, 411
CviAII CATG 1 cut(s) 358
CviJI RGCY 9 cut(s) 97, 133, 172, 179, 293, 329, 348, 387, 426
CviKI_1 RGCY 9 cut(s) 97, 133, 172, 179, 293, 329, 348, 387, 426
CviQI GTAC 2 cut(s) 267, 411
DdeI CTNAG 1 cut(s) 419
DinI GGCGCC 1 cut(s) 190
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 346
EciI GGCGGA 1 cut(s) 239
EgeI GGCGCC 1 cut(s) 190
EheI GGCGCC 1 cut(s) 190
FaeI CATG 1 cut(s) 361
FaiI YATR 5 cut(s) 11, 33, 359, 374, 429
FatI CATG 1 cut(s) 357
Fnu4HI GCNGC 3 cut(s) 209, 394, 433
Fsp4HI GCNGC 3 cut(s) 209, 394, 433
FspBI CTAG 1 cut(s) 201
GlaI GCGC 2 cut(s) 190, 280
GluI GCNGC 3 cut(s) 209, 394, 433
HaeII RGCGCY 2 cut(s) 192, 282
HaeIII GGCC 1 cut(s) 348
HgaI GACGC 3 cut(s) 114, 121, 227
HhaI GCGC 2 cut(s) 191, 281
Hin1I GRCGYC 4 cut(s) 113, 125, 189, 238
Hin1II CATG 1 cut(s) 361
Hin6I GCGC 2 cut(s) 189, 279
HinP1I GCGC 2 cut(s) 189, 279
HindIII AAGCTT 1 cut(s) 131
Hpy188I TCNGA 2 cut(s) 248, 298
Hpy188III TCNNGA 1 cut(s) 442
Hpy99I CGWCG 7 cut(s) 65, 83, 115, 130, 144, 163, 243
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 4 cut(s) 17, 31, 211, 308
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 354, 393, 432
HpyF3I CTNAG 1 cut(s) 419
Hsp92I GRCGYC 4 cut(s) 113, 125, 189, 238
Hsp92II CATG 1 cut(s) 361
HspAI GCGC 2 cut(s) 189, 279
KasI GGCGCC 1 cut(s) 188
Kzo9I GATC 1 cut(s) 319
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 2 cut(s) 171, 382
Lsp1109I GCAGC 1 cut(s) 195
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MluCI AATT 1 cut(s) 196
Mly113I GGCGCC 1 cut(s) 189
MnlI CCTC 4 cut(s) 220, 283, 344, 377
MwoI GCNNNNNNNGC 4 cut(s) 335, 354, 393, 432
NarI GGCGCC 1 cut(s) 189
NdeII GATC 1 cut(s) 319
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 1 cut(s) 190
NmeAIII GCCGAG 2 cut(s) 214, 374
PkrI GCNGC 3 cut(s) 210, 395, 434
PluTI GGCGCC 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 387
RsaI GTAC 2 cut(s) 268, 412
RsaNI GTAC 2 cut(s) 267, 411
SatI GCNGC 3 cut(s) 209, 394, 433
Sau3AI GATC 1 cut(s) 319
SfoI GGCGCC 1 cut(s) 190
Sse9I AATT 1 cut(s) 196
SsiI CCGC 4 cut(s) 224, 393, 408, 432
SspDI GGCGCC 1 cut(s) 188
SspMI CTAG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 128
TasI AATT 1 cut(s) 196
TatI WGTACW 1 cut(s) 266
TauI GCSGC 2 cut(s) 396, 435
TscAI CASTG 1 cut(s) 345
TseI GCWGC 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 273
TspRI CASTG 1 cut(s) 345
XapI RAATTY 1 cut(s) 196
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.