Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008157

Physical Location & Seq

Genomic Coordinates Reverse (-)

12565528 .. 12583789

Gene Structure 18262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG152700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCGAGCACCTCTACGACAATATAGGGTTGAGTTTGGTTGTGGAAGAAGAAGTACCATAAAGATAAATTCGATCGTAGTTAGGAAATTCGGAGGTCGATATCTTACAATTCCTACCATTCGTGGCCCTTCTTTTCTAGAGTTAGTTTGGGAAGGACTTGTGCTTGGAGCGGGAGCTGCTATTGGAAACTGGAACAGGGAGAACGATAGTAAAAGAGTTTTGCTTCGGATAGGTGGACATTATGTACCTCATCATATGGATATAGCTCTAGTGATAGCGAAGACAGTGAAGATTGATCGACGTATAGTGATACACAGAGTGTGCAGCTGCTGCTGTAATGCAGACTTGTTGAAATTCTTCAGAAGTGATGTGAGCAGGAAACAACTTGTGCAAAAAGCTTCAGTCAATGGAGATGTCAATAAGAAGGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006399 GO:0006450 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051499 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_deacylase

Protein Analysis

144

Amino Acids

16.26

Weight (kDa)

10.5

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008157)

Species	Orthologous Gene IDs
malus_domestica	MD06G1135000.v1.1
pyrus_communis	pycom06g12600 pycom06g12660
rosa_chinensis	RchiOBHm_Chr7g0182801 RchiOBHm_Chr7g0189211
rosa_multiflora	Rmu_sc0000239.1_g000045
rosa_roxburghii	Rroxscaffold_172G00445440 Rroxscaffold_2G00103850 Rroxscaffold_2G00125400 Rroxscaffold_2G00129600 Rroxscaffold_3G00220580 Rroxscaffold_3G00234810 Rroxscaffold_3G00243090 Rroxscaffold_3G00265650 Rroxscaffold_4G00330820 Rroxscaffold_6G00425560 Rroxscaffold_7G00169720 Rroxscaffold_7G00190290 Rroxscaffold_7G00204940 Rroxscaffold_7G00208230
rosa_samantha	Rh4BG005500 Rh4BG099100 Rh6BG169400 Rh7CG152700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	170
AciI	CCGC	1 cut(s)	170
AcsI	RAATTY	3 cut(s)	67, 86, 353
AcuI	CTGAAG	2 cut(s)	343, 384
AdeI	CACNNNGTG	1 cut(s)	319
AfaI	GTAC	2 cut(s)	55, 246
AgsI	TTSAA	1 cut(s)	352
AluBI	AGCT	4 cut(s)	176, 266, 327, 398
AluI	AGCT	4 cut(s)	176, 266, 327, 398
Alw21I	GWGCWC	1 cut(s)	10
AlwNI	CAGNNNCTG	1 cut(s)	330
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	4 cut(s)	176, 324, 327, 330
ApoI	RAATTY	3 cut(s)	67, 86, 353
Asp700I	GAANNNNTTC	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	125
BarI	GAAGNNNNNNTAC	2 cut(s)	37, 69
BbsI	GAAGAC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	4 cut(s)	163, 314, 317, 336
BfaI	CTAG	2 cut(s)	137, 269
BisI	GCNGC	4 cut(s)	177, 325, 328, 331
BlsI	GCNGC	4 cut(s)	178, 326, 329, 332
BmgT120I	GGNCC	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	194
BseXI	GCAGC	4 cut(s)	163, 314, 317, 336
BsgI	GTGCAG	1 cut(s)	343
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	126
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	2 cut(s)	72, 295
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	194
BssMI	GATC	2 cut(s)	72, 295
Bst4CI	ACNGT	1 cut(s)	286
BstAPI	GCANNNNNTGC	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	6
BstKTI	GATC	2 cut(s)	75, 298
BstMBI	GATC	2 cut(s)	72, 295
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 330
BstV1I	GCAGC	4 cut(s)	163, 314, 317, 336
BstV2I	GAAGAC	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	54, 245
CviJI	RGCY	5 cut(s)	126, 176, 266, 327, 398
CviKI_1	RGCY	5 cut(s)	126, 176, 266, 327, 398
CviQI	GTAC	2 cut(s)	54, 245
DpnI	GATC	2 cut(s)	74, 297
DpnII	GATC	2 cut(s)	72, 295
DraIII	CACNNNGTG	1 cut(s)	319
Eco32I	GATATC	1 cut(s)	101
Eco57I	CTGAAG	2 cut(s)	343, 384
EcoRV	GATATC	1 cut(s)	101
FaiI	YATR	7 cut(s)	24, 59, 243, 255, 257, 263, 305
FauI	CCCGC	1 cut(s)	163
FauNDI	CATATG	1 cut(s)	255
Fnu4HI	GCNGC	4 cut(s)	177, 325, 328, 331
Fsp4HI	GCNGC	4 cut(s)	177, 325, 328, 331
FspBI	CTAG	2 cut(s)	137, 269
GluI	GCNGC	4 cut(s)	177, 325, 328, 331
HaeIII	GGCC	1 cut(s)	126
HindIII	AAGCTT	1 cut(s)	396
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	3 cut(s)	92, 228, 362
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	236
Hpy99I	CGWCG	1 cut(s)	303
HpyAV	CCTTC	3 cut(s)	138, 146, 418
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	3 cut(s)	324, 341, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 330
HpySE526I	ACGT	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	72, 295
LmnI	GCTCC	2 cut(s)	167, 173
LpnPI	CCDG	3 cut(s)	175, 181, 361
Lsp1109I	GCAGC	4 cut(s)	163, 314, 317, 336
MaeI	CTAG	2 cut(s)	137, 269
MaeII	ACGT	1 cut(s)	301
MalI	GATC	2 cut(s)	74, 297
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	2 cut(s)	72, 295
MboII	GAAGA	5 cut(s)	57, 60, 292, 301, 349
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	4 cut(s)	67, 86, 108, 353
MnlI	CCTC	3 cut(s)	21, 86, 258
MroXI	GAANNNNTTC	1 cut(s)	356
MspA1I	CMGCKG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	176, 330
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	2 cut(s)	72, 295
PdmI	GAANNNNTTC	1 cut(s)	356
PkrI	GCNGC	4 cut(s)	178, 326, 329, 332
Ple19I	CGATCG	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	125
PstNI	CAGNNNCTG	1 cut(s)	330
PvuI	CGATCG	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	327
RsaI	GTAC	2 cut(s)	55, 246
RsaNI	GTAC	2 cut(s)	54, 245
SatI	GCNGC	4 cut(s)	177, 325, 328, 331
Sau3AI	GATC	2 cut(s)	72, 295
Sau96I	GGNCC	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	9 cut(s)	13, 97, 178, 235, 250, 268, 304, 329, 400
Sse9I	AATT	4 cut(s)	67, 86, 108, 353
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	2 cut(s)	137, 269
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	3 cut(s)	71, 97, 298
TasI	AATT	4 cut(s)	67, 86, 108, 353
TscAI	CASTG	1 cut(s)	291
TseI	GCWGC	4 cut(s)	176, 324, 327, 330
TspRI	CASTG	1 cut(s)	291
XapI	RAATTY	3 cut(s)	67, 86, 353
XbaI	TCTAGA	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	356
XspI	CTAG	2 cut(s)	137, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.