Rroxscaffold_2G00103850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008157
Physical Location & Seq
Forward (+)
26881110 .. 26893996
12887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00103850.1

Sequence Viewer

Length: 576 bp
ATGGCGGAAGGCCCTTGCTATCCCGAAGCGAGAAGAAGGATAAGAAGGAGGAGGCTAAGTTGGGACACCTCGTTCCGTGGGAAAGGAAAGCAAATCACTACTACACACAAAAAGACATTGATCGAGTCCGGGCCGAGTGGGCAAAGATTAGCTGGAGACGACGAAGAAGGATTGACAAATAAACGATTGGCTTTTCCTATTTCGGGTCTGGTTCCAGATGCAACTAGTGACCATGAAATTCGGAGGGAGTCTATAGGAGAAGAAGGGAATCCGATTCAAGCAGTGATAGAGCAATGGGCTGAGAGTAGCATGAAACCGTCGCAGAGTAAGTGTCGCAAAGCTCTTTGCCGTAGCAAAAGTGGTCTGCGACGGCATTTTGCCGTGGCTAAAGATATTGGCGACGCCACCAACGGCGTCGAAACTTTGCCGTCGCGAGCCGTCGCAAATGCTTTTTTGCGACGGCAAAACAGCTTTTCGCTACGGCGGGCGCCGTGGCTATTGCAATTTTTTTTTGTAGTGGTACTAGACAACAGAAATTTTTTTAATCGGACGATAGATCTCCTTCGTCGTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.75

Weight (kDa)

10.8

Isoelectric Point (pI)

77.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 487
AccII CGCG 1 cut(s) 433
AciI CCGC 2 cut(s) 5, 484
AcsI RAATTY 2 cut(s) 237, 535
AcyI GRCGYC 3 cut(s) 402, 414, 488
AfaI GTAC 1 cut(s) 522
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 1 cut(s) 278
AhlI ACTAGT 1 cut(s) 224
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 3 cut(s) 152, 341, 471
AluI AGCT 3 cut(s) 152, 341, 471
Alw26I GTCTC 1 cut(s) 150
AoxI GGCC 2 cut(s) 10, 131
ApoI RAATTY 2 cut(s) 237, 535
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 2 cut(s) 11, 131
AsuC2I CCSGG 1 cut(s) 130
BanI GGYRCC 1 cut(s) 487
BceAI ACGGC 9 cut(s) 333, 365, 386, 412, 422, 427, 475, 476, 497
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 150
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 2 cut(s) 225, 524
BfmI CTRYAG 1 cut(s) 252
BfoI RGCGCY 1 cut(s) 491
BglI GCCNNNNNGGC 1 cut(s) 139
BglII AGATCT 1 cut(s) 556
Bme1390I CCNGG 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 11, 131
BmiI GGNNCC 2 cut(s) 213, 489
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 130
BsaHI GRCGYC 3 cut(s) 402, 414, 488
BsaJI CCNNGG 3 cut(s) 76, 381, 491
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 299
BseDI CCNNGG 3 cut(s) 76, 381, 491
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMI GCAATG 1 cut(s) 299
BseMII CTCAG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 433
BshFI GGCC 2 cut(s) 12, 133
BshNI GGYRCC 1 cut(s) 487
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 150
BsmBI CGTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 2 cut(s) 12, 133
Bsp143I GATC 2 cut(s) 120, 556
Bsp68I TCGCGA 1 cut(s) 433
BspACI CCGC 2 cut(s) 5, 484
BspANI GGCC 2 cut(s) 12, 133
BspCNI CTCAG 1 cut(s) 292
BspFNI CGCG 1 cut(s) 433
BspLI GGNNCC 2 cut(s) 213, 489
BspT107I GGYRCC 1 cut(s) 487
BsrDI GCAATG 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 76, 381, 491
BssMI GATC 2 cut(s) 120, 556
BssNI GRCGYC 3 cut(s) 402, 414, 488
Bst4CI ACNGT 1 cut(s) 318
BstACI GRCGYC 3 cut(s) 402, 414, 488
BstC8I GCNNGC 2 cut(s) 435, 486
BstDEI CTNAG 2 cut(s) 56, 300
BstDSI CCRYGG 3 cut(s) 76, 381, 491
BstFNI CGCG 1 cut(s) 433
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 2 cut(s) 123, 559
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 120, 556
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 252
BstUI CGCG 1 cut(s) 433
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
BsuRI GGCC 2 cut(s) 12, 133
BtgI CCRYGG 3 cut(s) 76, 381, 491
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
BtuMI TCGCGA 1 cut(s) 433
Cac8I GCNNGC 2 cut(s) 435, 486
CfoI GCGC 1 cut(s) 490
Cfr13I GGNCC 2 cut(s) 11, 131
CseI GACGC 2 cut(s) 403, 410
Csp6I GTAC 1 cut(s) 521
CviAII CATG 2 cut(s) 233, 310
CviQI GTAC 1 cut(s) 521
DdeI CTNAG 2 cut(s) 56, 300
DinI GGCGCC 1 cut(s) 489
DpnI GATC 2 cut(s) 122, 558
DpnII GATC 2 cut(s) 120, 556
EciI GGCGGA 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 11
EgeI GGCGCC 1 cut(s) 489
EheI GGCGCC 1 cut(s) 489
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 2 cut(s) 236, 313
FaiI YATR 3 cut(s) 234, 254, 311
FaqI GGGAC 1 cut(s) 77
FatI CATG 2 cut(s) 232, 309
FauI CCCGC 1 cut(s) 477
FspBI CTAG 2 cut(s) 225, 524
GlaI GCGC 1 cut(s) 489
GsuI CTGGAG 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 2 cut(s) 12, 133
HapII CCGG 1 cut(s) 129
HgaI GACGC 2 cut(s) 403, 410
HhaI GCGC 1 cut(s) 490
Hin1I GRCGYC 3 cut(s) 402, 414, 488
Hin1II CATG 2 cut(s) 236, 313
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HinfI GANTC 4 cut(s) 125, 248, 268, 274
HpaII CCGG 1 cut(s) 129
Hpy188I TCNGA 3 cut(s) 243, 273, 549
Hpy188III TCNNGA 3 cut(s) 23, 215, 432
HpyAV CCTTC 5 cut(s) 30, 39, 161, 257, 572
HpyCH4III ACNGT 1 cut(s) 318
HpyCH4V TGCA 2 cut(s) 221, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 2 cut(s) 56, 300
Hsp92I GRCGYC 3 cut(s) 402, 414, 488
Hsp92II CATG 2 cut(s) 236, 313
HspAI GCGC 1 cut(s) 488
KasI GGCGCC 1 cut(s) 487
Kzo9I GATC 2 cut(s) 120, 556
LpnPI CCDG 4 cut(s) 138, 142, 194, 228
LweI GCATC 1 cut(s) 208
MaeI CTAG 2 cut(s) 225, 524
MaeIII GTNAC 1 cut(s) 227
MalI GATC 2 cut(s) 122, 558
MboI GATC 2 cut(s) 120, 556
MboII GAAGA 3 cut(s) 45, 176, 272
MflI RGATCY 1 cut(s) 556
MluCI AATT 3 cut(s) 237, 503, 535
Mly113I GGCGCC 1 cut(s) 488
MlyI GAGTC 2 cut(s) 134, 257
MnlI CCTC 4 cut(s) 42, 45, 79, 237
MseI TTAA 1 cut(s) 543
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 130
MvnI CGCG 1 cut(s) 433
MwoI GCNNNNNNNGC 1 cut(s) 139
NarI GGCGCC 1 cut(s) 488
NciI CCSGG 1 cut(s) 130
NdeII GATC 2 cut(s) 120, 556
NlaIII CATG 2 cut(s) 236, 313
NlaIV GGNNCC 2 cut(s) 213, 489
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 227
NruI TCGCGA 1 cut(s) 433
PfeI GAWTC 2 cut(s) 268, 274
PleI GAGTC 2 cut(s) 133, 256
PluTI GGCGCC 1 cut(s) 491
PpsI GAGTC 2 cut(s) 133, 256
PspN4I GGNNCC 2 cut(s) 213, 489
PspPI GGNCC 2 cut(s) 11, 131
PsuI RGATCY 1 cut(s) 556
RruI TCGCGA 1 cut(s) 433
RsaI GTAC 1 cut(s) 522
RsaNI GTAC 1 cut(s) 521
SaqAI TTAA 1 cut(s) 543
Sau3AI GATC 2 cut(s) 120, 556
Sau96I GGNCC 2 cut(s) 11, 131
SchI GAGTC 2 cut(s) 134, 257
ScrFI CCNGG 1 cut(s) 130
SetI ASST 4 cut(s) 71, 154, 343, 473
SfaNI GCATC 1 cut(s) 208
SfcI CTRYAG 1 cut(s) 252
SfoI GGCGCC 1 cut(s) 489
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 3 cut(s) 237, 503, 535
SsiI CCGC 2 cut(s) 5, 484
SspDI GGCGCC 1 cut(s) 487
SspMI CTAG 2 cut(s) 225, 524
StyD4I CCNGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 318
TaqI TCGA 3 cut(s) 123, 417, 571
TasI AATT 3 cut(s) 237, 503, 535
TfiI GAWTC 2 cut(s) 268, 274
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 2 cut(s) 249, 326
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 1 cut(s) 288
XapI RAATTY 2 cut(s) 237, 535
XspI CTAG 2 cut(s) 225, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.