Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008157

Physical Location & Seq

Genomic Coordinates Forward (+)

16937589 .. 16945182

Gene Structure 7594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG099100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGTTTGTCTGGTTGATGATTGGCAGCGATCTGGCGTATGGCTTGGGATTTGGTATCGATCCATGATAGATTTGAAGGTGGTTGGGTGGTGGTGGTGGAGCGTTGAGACTGGCCGTGCGAAAGAAGGGGGATGGTTGGGACGAAGGGTGATATGGATCCGGACCCAAACAGCAAGGGGCACCGGCGGTGCTGCTTGGTGCCGCGGGCCATTGGGTCCTTTGCTGCGGATAAGTACCATAAAGATAAATTCGATCGTAGTTGGGAAATTCGGAGGTCGATATCCTACCATTCGTGGCCCTTCTTTTCTAGAGTTAGTTTGGGAAGGACTTGGGCTTGGAGCGGGAGCTGCTATTGCAAACTGGAATAGGGAGAACGATAGTAAAAGAGTTTTGCTTTGGATAGAAACACTTTGGAGTATAGACATGGAGCACGTAAATTCGTTGATACTGTTCAAGCGAGTTTGGGGAATCCAGAAAGAATTAGGTGTCCTTGCATTGATTGCAGAAACACAAAACGTCATAACTATAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006399 GO:0006450 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051499 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_deacylase

Protein Analysis

177

Amino Acids

20.04

Weight (kDa)

9.92

Isoelectric Point (pI)

24.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008157)

Species	Orthologous Gene IDs
malus_domestica	MD06G1135000.v1.1
pyrus_communis	pycom06g12600 pycom06g12660
rosa_chinensis	RchiOBHm_Chr7g0182801 RchiOBHm_Chr7g0189211
rosa_multiflora	Rmu_sc0000239.1_g000045
rosa_roxburghii	Rroxscaffold_172G00445440 Rroxscaffold_2G00103850 Rroxscaffold_2G00125400 Rroxscaffold_2G00129600 Rroxscaffold_3G00220580 Rroxscaffold_3G00234810 Rroxscaffold_3G00243090 Rroxscaffold_3G00265650 Rroxscaffold_4G00330820 Rroxscaffold_6G00425560 Rroxscaffold_7G00169720 Rroxscaffold_7G00190290 Rroxscaffold_7G00204940 Rroxscaffold_7G00208230
rosa_samantha	Rh4BG005500 Rh4BG099100 Rh6BG169400 Rh7CG152700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	179, 198
AccBSI	CCGCTC	1 cut(s)	341
AccII	CGCG	1 cut(s)	204
AccIII	TCCGGA	1 cut(s)	159
AciI	CCGC	5 cut(s)	186, 202, 204, 226, 341
AclWI	GGATC	3 cut(s)	54, 151, 164
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	3 cut(s)	247, 266, 436
AfaI	GTAC	1 cut(s)	235
AgsI	TTSAA	2 cut(s)	76, 454
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	3 cut(s)	54, 151, 164
Aor13HI	TCCGGA	1 cut(s)	159
AoxI	GGCC	3 cut(s)	112, 206, 295
ApeKI	GCWGC	4 cut(s)	25, 191, 223, 347
ApoI	RAATTY	3 cut(s)	247, 266, 436
AspS9I	GGNCC	4 cut(s)	162, 206, 215, 296
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	2 cut(s)	162, 215
BaeGI	GKGCMC	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	156
BanI	GGYRCC	2 cut(s)	179, 198
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	4 cut(s)	37, 178, 210, 334
BccI	CCATC	1 cut(s)	126
BceAI	ACGGC	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	308
BisI	GCNGC	5 cut(s)	26, 192, 202, 224, 348
BlsI	GCNGC	5 cut(s)	27, 193, 203, 225, 349
Bme18I	GGWCC	2 cut(s)	162, 215
BmgT120I	GGNCC	4 cut(s)	162, 206, 215, 296
BmiI	GGNNCC	5 cut(s)	158, 164, 181, 200, 216
Bsa29I	ATCGAT	1 cut(s)	58
BsaAI	YACGTR	1 cut(s)	433
BsaBI	GATNNNNATC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	159
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	2 cut(s)	115, 365
Bse8I	GATNNNNATC	1 cut(s)	155
BseAI	TCCGGA	1 cut(s)	159
BseCI	ATCGAT	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	137
BseJI	GATNNNNATC	1 cut(s)	155
BseNI	ACTGG	2 cut(s)	115, 365
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	4 cut(s)	37, 178, 210, 334
Bsh1236I	CGCG	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	3 cut(s)	114, 208, 297
BshNI	GGYRCC	2 cut(s)	179, 198
BshVI	ATCGAT	1 cut(s)	58
BsiEI	CGRYCG	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	432
BsiSI	CCGG	2 cut(s)	160, 183
BslFI	GGGAC	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	153
BsnI	GGCC	3 cut(s)	114, 208, 297
Bsp1286I	GDGCHC	2 cut(s)	182, 432
Bsp13I	TCCGGA	1 cut(s)	159
Bsp143I	GATC	4 cut(s)	29, 59, 156, 252
BspACI	CCGC	5 cut(s)	186, 202, 204, 226, 341
BspANI	GGCC	3 cut(s)	114, 208, 297
BspDI	ATCGAT	1 cut(s)	58
BspEI	TCCGGA	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	5 cut(s)	158, 164, 181, 200, 216
BspPI	GGATC	3 cut(s)	54, 151, 164
BspT107I	GGYRCC	2 cut(s)	179, 198
BsrBI	CCGCTC	1 cut(s)	341
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	115, 365
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	4 cut(s)	29, 59, 156, 252
Bst4CI	ACNGT	1 cut(s)	450
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstBAI	YACGTR	1 cut(s)	433
BstC8I	GCNNGC	1 cut(s)	206
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	204
BstKTI	GATC	4 cut(s)	32, 62, 159, 255
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	4 cut(s)	29, 59, 156, 252
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 353, 500
BstSLI	GKGCMC	1 cut(s)	182
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	4 cut(s)	37, 178, 210, 334
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	58
BsuRI	GGCC	3 cut(s)	114, 208, 297
BsuTUI	ATCGAT	1 cut(s)	58
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	4 cut(s)	162, 206, 215, 296
Cfr42I	CCGCGG	1 cut(s)	205
ClaI	ATCGAT	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	2 cut(s)	64, 424
CviJI	RGCY	6 cut(s)	43, 114, 208, 297, 334, 347
CviKI_1	RGCY	6 cut(s)	43, 114, 208, 297, 334, 347
CviQI	GTAC	1 cut(s)	234
DpnI	GATC	4 cut(s)	31, 61, 158, 254
DpnII	GATC	4 cut(s)	29, 59, 156, 252
EaeI	YGGCCR	1 cut(s)	112
Eco32I	GATATC	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	162, 215
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRV	GATATC	1 cut(s)	281
FaeI	CATG	2 cut(s)	67, 427
FaiI	YATR	9 cut(s)	40, 65, 154, 239, 419, 425, 521, 527, 532
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	2 cut(s)	63, 423
FauI	CCCGC	2 cut(s)	197, 334
Fnu4HI	GCNGC	5 cut(s)	26, 192, 202, 224, 348
FokI	GGATG	1 cut(s)	144
Fsp4HI	GCNGC	5 cut(s)	26, 192, 202, 224, 348
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	5 cut(s)	26, 192, 202, 224, 348
HaeIII	GGCC	3 cut(s)	114, 208, 297
HapII	CCGG	2 cut(s)	160, 183
Hin1II	CATG	2 cut(s)	67, 427
HinfI	GANTC	1 cut(s)	468
HpaII	CCGG	2 cut(s)	160, 183
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	272
Hpy188III	TCNNGA	3 cut(s)	160, 308, 472
HpyAV	CCTTC	5 cut(s)	70, 119, 138, 309, 317
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4IV	ACGT	2 cut(s)	432, 516
HpyCH4V	TGCA	3 cut(s)	356, 494, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 353, 500
HpySE526I	ACGT	2 cut(s)	432, 516
Hsp92II	CATG	2 cut(s)	67, 427
Kpn2I	TCCGGA	1 cut(s)	159
KspI	CCGCGG	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	29, 59, 156, 252
LmnI	GCTCC	4 cut(s)	99, 338, 344, 427
LpnPI	CCDG	6 cut(s)	18, 96, 173, 196, 346, 485
Lsp1109I	GCAGC	4 cut(s)	37, 178, 210, 334
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	2 cut(s)	432, 516
MalI	GATC	4 cut(s)	31, 61, 158, 254
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	4 cut(s)	29, 59, 156, 252
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	2 cut(s)	182, 432
MluCI	AATT	4 cut(s)	247, 266, 436, 479
MnlI	CCTC	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	2 cut(s)	160, 183
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	347, 353, 500
NdeII	GATC	4 cut(s)	29, 59, 156, 252
NlaIII	CATG	2 cut(s)	67, 427
NlaIV	GGNNCC	5 cut(s)	158, 164, 181, 200, 216
PfeI	GAWTC	1 cut(s)	468
PkrI	GCNGC	5 cut(s)	27, 193, 203, 225, 349
Ple19I	CGATCG	1 cut(s)	255
Ppu21I	YACGTR	1 cut(s)	433
PpuMI	RGGWCCY	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	215
PspN4I	GGNNCC	5 cut(s)	158, 164, 181, 200, 216
PspPI	GGNCC	4 cut(s)	162, 206, 215, 296
PspPPI	RGGWCCY	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	156
PvuI	CGATCG	1 cut(s)	255
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SacII	CCGCGG	1 cut(s)	205
SatI	GCNGC	5 cut(s)	26, 192, 202, 224, 348
Sau3AI	GATC	4 cut(s)	29, 59, 156, 252
Sau96I	GGNCC	4 cut(s)	162, 206, 215, 296
SduI	GDGCHC	2 cut(s)	182, 432
SetI	ASST	6 cut(s)	81, 277, 349, 435, 487, 519
Sfr303I	CCGCGG	1 cut(s)	205
SgrAI	CRCCGGYG	1 cut(s)	182
SgrBI	CCGCGG	1 cut(s)	205
SinI	GGWCC	2 cut(s)	162, 215
Sse9I	AATT	4 cut(s)	247, 266, 436, 479
SsiI	CCGC	5 cut(s)	186, 202, 204, 226, 341
SspMI	CTAG	1 cut(s)	308
TaaI	ACNGT	1 cut(s)	450
TaiI	ACGT	2 cut(s)	435, 519
TaqI	TCGA	3 cut(s)	58, 251, 277
TasI	AATT	4 cut(s)	247, 266, 436, 479
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	468
TseI	GCWGC	4 cut(s)	25, 191, 223, 347
VpaK11BI	GGWCC	2 cut(s)	162, 215
XapI	RAATTY	3 cut(s)	247, 266, 436
XbaI	TCTAGA	1 cut(s)	307
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.