Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008157

Physical Location & Seq

Genomic Coordinates Reverse (-)

59084689 .. 59085460

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCTGCAGCTTTGTCAAAACTGGTGTGCTGTAGTTGTTGTAAAGGAATGGTGGCTGCAACCTTGTCAAAATTGGTGGATACAAAGCTTAAGCTTTTCAAGAGTATTGTGCTGCAGCTGCAGGCAAAGTTTGGTGTCTTGCAACTTTGCCAAGTTAGGTGTGCTGCCACTTCAGTTAAAGAGTATCAGATTCTCGGGCTGCCTGACCTTTCTAGTGTGTTATGGGAGAGCACTGATCATATAGATTCACTCTCCGAGCTGATCAAGATGGCTTCTTTGCTAGACTTCAATGAGGAAGCAGTTGATTTCTTGATGAAGTCCAAGAATTTGCAAATCTTCATGGAGGATGAGGAGTTTCTTAGGACCTGTCTAGCTACCCTCTTGGCCGCTATGTGGTTACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

134

Amino Acids

14.9

Weight (kDa)

5.36

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008157)

Species	Orthologous Gene IDs
malus_domestica	MD06G1135000.v1.1
pyrus_communis	pycom06g12600 pycom06g12660
rosa_chinensis	RchiOBHm_Chr7g0182801 RchiOBHm_Chr7g0189211
rosa_multiflora	Rmu_sc0000239.1_g000045
rosa_roxburghii	Rroxscaffold_172G00445440 Rroxscaffold_2G00103850 Rroxscaffold_2G00125400 Rroxscaffold_2G00129600 Rroxscaffold_3G00220580 Rroxscaffold_3G00234810 Rroxscaffold_3G00243090 Rroxscaffold_3G00265650 Rroxscaffold_4G00330820 Rroxscaffold_6G00425560 Rroxscaffold_7G00169720 Rroxscaffold_7G00190290 Rroxscaffold_7G00204940 Rroxscaffold_7G00208230
rosa_samantha	Rh4BG005500 Rh4BG099100 Rh6BG169400 Rh7CG152700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	387
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	393
AflII	CTTAAG	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	100, 289
AluBI	AGCT	6 cut(s)	11, 88, 94, 118, 259, 374
AluI	AGCT	6 cut(s)	11, 88, 94, 118, 259, 374
Alw21I	GWGCWC	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	8 cut(s)	5, 8, 56, 112, 115, 118, 164, 199
ApoI	RAATTY	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	363
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	233
BbvI	GCAGC	7 cut(s)	20, 43, 99, 105, 127, 151, 186
BccI	CCATC	1 cut(s)	262
BciVI	GTATCC	1 cut(s)	73
BclI	TGATCA	2 cut(s)	235, 261
BfaI	CTAG	3 cut(s)	213, 281, 371
BfmI	CTRYAG	4 cut(s)	6, 31, 113, 119
BfrI	CTTAAG	1 cut(s)	89
BfuI	GTATCC	1 cut(s)	73
BisI	GCNGC	9 cut(s)	6, 9, 57, 113, 116, 119, 165, 200, 387
BlsI	GCNGC	9 cut(s)	7, 10, 58, 114, 117, 120, 166, 201, 388
Bme18I	GGWCC	1 cut(s)	363
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse1I	ACTGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	7 cut(s)	20, 43, 99, 105, 127, 151, 186
BshFI	GGCC	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	393
BsnI	GGCC	1 cut(s)	386
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	235, 261
BspACI	CCGC	1 cut(s)	387
BspANI	GGCC	1 cut(s)	386
BspMAI	CTGCAG	3 cut(s)	10, 117, 123
BspTI	CTTAAG	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	27
BssMI	GATC	2 cut(s)	235, 261
BstAFI	CTTAAG	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	359
BstF5I	GGATG	1 cut(s)	352
BstKTI	GATC	2 cut(s)	238, 264
BstMBI	GATC	2 cut(s)	235, 261
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstSFI	CTRYAG	4 cut(s)	6, 31, 113, 119
BstV1I	GCAGC	7 cut(s)	20, 43, 99, 105, 127, 151, 186
BsuI	GTATCC	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	363
CspCI	CAANNNNNGTGG	2 cut(s)	57, 92
CviAII	CATG	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	2 cut(s)	237, 263
DpnII	GATC	2 cut(s)	235, 261
EaeI	YGGCCR	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	363
Eco57I	CTGAAG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	363
FaeI	CATG	1 cut(s)	343
FaiI	YATR	5 cut(s)	223, 240, 242, 341, 392
FatI	CATG	1 cut(s)	339
FbaI	TGATCA	2 cut(s)	235, 261
Fnu4HI	GCNGC	9 cut(s)	6, 9, 57, 113, 116, 119, 165, 200, 387
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	9 cut(s)	6, 9, 57, 113, 116, 119, 165, 200, 387
FspBI	CTAG	3 cut(s)	213, 281, 371
GluI	GCNGC	9 cut(s)	6, 9, 57, 113, 116, 119, 165, 200, 387
HaeIII	GGCC	1 cut(s)	386
Hin1II	CATG	1 cut(s)	343
HindIII	AAGCTT	2 cut(s)	86, 92
HinfI	GANTC	2 cut(s)	190, 245
Hpy188I	TCNGA	2 cut(s)	189, 256
Hpy188III	TCNNGA	3 cut(s)	100, 265, 310
HpyCH4V	TGCA	6 cut(s)	8, 59, 115, 121, 142, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	1 cut(s)	359
Hsp92II	CATG	1 cut(s)	343
Ksp22I	TGATCA	2 cut(s)	235, 261
Kzo9I	GATC	2 cut(s)	235, 261
LpnPI	CCDG	4 cut(s)	8, 107, 216, 379
Lsp1109I	GCAGC	7 cut(s)	20, 43, 99, 105, 127, 151, 186
MaeI	CTAG	3 cut(s)	213, 281, 371
MaeIII	GTNAC	1 cut(s)	396
MalI	GATC	2 cut(s)	237, 263
MboI	GATC	2 cut(s)	235, 261
MboII	GAAGA	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	2 cut(s)	71, 325
MnlI	CCTC	4 cut(s)	286, 337, 343, 389
MseI	TTAA	2 cut(s)	90, 177
MspA1I	CMGCKG	1 cut(s)	118
MspCI	CTTAAG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	118
NdeII	GATC	2 cut(s)	235, 261
NlaIII	CATG	1 cut(s)	343
PfeI	GAWTC	2 cut(s)	190, 245
PkrI	GCNGC	9 cut(s)	7, 10, 58, 114, 117, 120, 166, 201, 388
PpuMI	RGGWCCY	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	363
PspPPI	RGGWCCY	1 cut(s)	363
PstI	CTGCAG	3 cut(s)	10, 117, 123
PvuII	CAGCTG	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	90, 177
SatI	GCNGC	9 cut(s)	6, 9, 57, 113, 116, 119, 165, 200, 387
Sau3AI	GATC	2 cut(s)	235, 261
Sau96I	GGNCC	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	233
SfcI	CTRYAG	4 cut(s)	6, 31, 113, 119
SinI	GGWCC	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	71, 325
SsiI	CCGC	1 cut(s)	387
SspMI	CTAG	3 cut(s)	213, 281, 371
TasI	AATT	2 cut(s)	71, 325
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	2 cut(s)	190, 245
Tru1I	TTAA	2 cut(s)	90, 177
Tru9I	TTAA	2 cut(s)	90, 177
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	8 cut(s)	5, 8, 56, 112, 115, 118, 164, 199
TspDTI	ATGAA	2 cut(s)	328, 329
TspRI	CASTG	1 cut(s)	238
Vha464I	CTTAAG	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	363
XapI	RAATTY	1 cut(s)	325
XspI	CTAG	3 cut(s)	213, 281, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.