Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004751

Physical Location & Seq

Genomic Coordinates Reverse (-)

16509550 .. 16512685

Gene Structure 3136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007402

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1881 bp

ATGCAGCAACTTCTCTCTTCTTCTTCTTCTTCAAACCCCAACTTCACTCTCTTCTCCACCTCCCCAAACCCTAACCACCTCTCCAAATTCACCTTCAAAATCTCCAATCTACCCCTCCACTCCCTCTCCTCCCCTTCACGCTGCTCCTCCTCCAGGGACTCCTCCTCCTCCTCCACCCAACTCCTCGACCACGACTCCTCCAACGCCGCCGTTTCCGACGAACGTAGTCGAGCCAATGCCTCCGTGCCGGAAACAAAACGAGCACTCGTCGTCCGCCGGCCCGCCATGGAGCTCCCCTCCGACGGCGAGAGTGACGACGAGTCGGCTTCCCCTATCGACGTCGGGCTCGCCAAGTTCGCCAAGAAGATTGCGATATTCGAACCCCAAGACGGCGCCGCAGGGTTGGATCCGAAAGAGAAGCCATTGAAGGTGAACTTGGACTTGGCATTGTACAGAGCTAAGATCTTGACCAGAAATTACCGCTATGCTGAAGCACAGCAAATACTTGAAAAGTGTATATATTATTGGCCGGAAGATGGGAGAGCTTATGTGGCATTGGGGAAGGCCTTAAGCAAACAATCGAAGACGGCCGAAGCCCGGGCTGTGTATGAGAAAGGCTGCCAAGCTACTCAAGGAGAAAATCCATACATTTGGCAGTGTTGGGCAGTTTTGGAAGATAAGATGGGAAATACGAGGAGAGCAAGGGAATTATTTGATGCGGCGACGGTTGCTGATAAGAAGCACATTGCTGCCTGGCATGGATGGGGAGTTTTAGAGCTAAAGCAAGGAAATATCAGCAAGGCAAGGCATCTGCTGGCCAAAGGTTTGAAATTTTGTGGTGGGAATGAGTACATATACCAGACGCTGGCAAGATTGGAAGCTAAAGCAAGTCGCTATGAGCAGGCTCGGTACTTGTTCAGGCAGGCCACTAAATGCAATCTCAAGAGCTGTGCTAGTTGGCTTGCGTGGGCTCAAATGGAGATGCAACAGGAAAACAATCGTGCTGCTAGGCAACTTTTTGAGAGATCAATACAGGCAAGCCCAAAGAATAGGTTTGCATGGCATGTTTGGGGACTTTTTGAAGCTAAAATGGGAAATGTTGAGAAGGGGAGAAAGTTATTAAAGATTGGCCATGCACTTAATCCAAGGGATCCAGTTCTCCTTCAGTCTCTTGCTTTATTGGAATATGAAAACTCGACTGCAAATCTTGCTCGACAGTTGTTCAGGCGAGCATCTGAGTTGGATCCAAGGCATCAACCAGTGTGGACGGCTTGGGGATGGATGGAATGGAAAGAAGGAAACATTGCCACAGCAAGGAAATTATACCAAAAAGCATTGTCTATTAACTCAACTAGTGAAACTGCTGCTCGCTGCCTACAGGCTTGGGGAGTTCTAGAACAGAGAATTGGTAACCTATCAGCAGCCCGGAGATTATTTAGGTCCTCTCTCAACATAAATTCTCAGAGTTATGTCACATGGATGACTTGGGCATCACTTGAGGAAAATCAAGGGAACTCTGTCCGTGCAGAGGAAATTCGTGATCTCTATTTCCAGCAGCGCACTGAAGTTGTGGATGATGCTTCATGGGTTATGGGATTGTTGGACATCATAGATCCAGCACTTGACAGAATCAGGAGTGTCTTGAACTTGGATCCAGCCTCCCAACAAAGTCGACTAGACTCTCTCAGAACAATACTAGAAGGAGAAAATGGAAATAACATTAATGAAGAGTCAGATAGCAATGACATGGAAAGTGAGAGTGGTTTTGATGTGGATGCTTTCTGTATAGAAAGATTATCTTTGGATCCATCTAAGCTACAAGTTCAGATGGAATTCTCACCGCCTTCACCAGTAAAGAGATCTAGAGAGAAAGTGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009657 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010114 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010608 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031324 GO:0031326 GO:0031967 GO:0031969 GO:0031975 GO:0032069 GO:0032074 GO:0032268 GO:0034248 GO:0034641 GO:0042170 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044092 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051336 GO:0051346 GO:0060255 GO:0060700 GO:0060701 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901917 GO:1901918 GO:1905777 GO:1905778 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_8

Protein Analysis

627

Amino Acids

70.61

Weight (kDa)

8.75

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17040 AT3G17040 AT3G17040 AT3G17040
fragaria_vesca	FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660
malus_domestica	MD13G1154800.v1.1
prunus_persica	Prupe.1G117800_v2.0.a1 Prupe.1G117800_v2.0.a1
pyrus_communis	pycom13g13160
rosa_chinensis	RchiOBHm_Chr4g0425111
rosa_laevigata	RLG00000007402
rosa_multiflora	Rmu_ssc0000420.1_g000027
rosa_roxburghii	Rroxscaffold_1G00031740 Rroxscaffold_5G00367180
rosa_rugosa	Rorug01G0106900 Rorug04G0201600 Rorug04G0201700
rosa_samantha	Rh1AG082100 Rh1BG099300 Rh4AG258300 Rh4BG263900 Rh4CG275000 Rh4DG259800
rosa_wichuraiana	Rw0G003480 Rw1G016170 Rw4G022330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	865
AccI	GTMKAC	1 cut(s)	1672
AciI	CCGC	7 cut(s)	207, 274, 282, 396, 481, 719, 1841
AcoI	YGGCCR	4 cut(s)	527, 588, 816, 1129
AcsI	RAATTY	5 cut(s)	86, 830, 1456, 1533, 1832
AcuI	CTGAAG	3 cut(s)	510, 1148, 1584
AcyI	GRCGYC	2 cut(s)	339, 393
AfaI	GTAC	3 cut(s)	452, 851, 911
AfiI	CCNNNNNNNGG	8 cut(s)	153, 302, 389, 536, 597, 865, 1314, 1528
AflII	CTTAAG	1 cut(s)	568
AgsI	TTSAA	7 cut(s)	33, 97, 427, 509, 829, 1082, 1645
AhdI	GACNNNNNGTC	1 cut(s)	319
AhlI	ACTAGT	1 cut(s)	1352
AjnI	CCWGG	2 cut(s)	152, 752
AjuI	GAANNNNNNNTTGG	8 cut(s)	77, 109, 419, 425, 451, 457, 1389, 1421
AluBI	AGCT	9 cut(s)	292, 458, 545, 626, 778, 881, 948, 1085, 1816
AluI	AGCT	9 cut(s)	292, 458, 545, 626, 778, 881, 948, 1085, 1816
Alw21I	GWGCWC	2 cut(s)	265, 294
Alw26I	GTCTC	1 cut(s)	1173
AlwNI	CAGNNNCTG	1 cut(s)	865
Ama87I	CYCGRG	1 cut(s)	597
AoxI	GGCC	7 cut(s)	278, 527, 564, 588, 816, 924, 1129
ApeKI	GCWGC	9 cut(s)	4, 141, 618, 749, 1004, 1364, 1371, 1421, 1555
ApoI	RAATTY	5 cut(s)	86, 830, 1456, 1533, 1832
AseI	ATTAAT	1 cut(s)	1722
AspLEI	GCGC	2 cut(s)	395, 1560
AspS9I	GGNCC	2 cut(s)	279, 1440
AsuC2I	CCSGG	3 cut(s)	598, 599, 1426
AsuHPI	GGTGA	4 cut(s)	82, 442, 1830, 1839
AsuII	TTCGAA	1 cut(s)	378
AvaI	CYCGRG	1 cut(s)	597
AvaII	GGWCC	1 cut(s)	1440
BalI	TGGCCA	2 cut(s)	818, 1131
BamHI	GGATCC	5 cut(s)	406, 1150, 1243, 1651, 1804
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	3 cut(s)	294, 348, 973
BbsI	GAAGAC	1 cut(s)	590
Bbv12I	GWGCWC	2 cut(s)	265, 294
BbvI	GCAGC	9 cut(s)	16, 128, 605, 736, 991, 1351, 1358, 1433, 1567
BccI	CCATC	7 cut(s)	530, 676, 756, 1272, 1276, 1816, 1822
BceAI	ACGGC	5 cut(s)	194, 319, 406, 603, 1284
BciT130I	CCWGG	2 cut(s)	154, 754
BcnI	CCSGG	3 cut(s)	598, 599, 1426
BcoDI	GTCTC	1 cut(s)	1173
BcuI	ACTAGT	1 cut(s)	1352
BfaI	CTAG	7 cut(s)	954, 1008, 1353, 1394, 1676, 1697, 1863
BfmI	CTRYAG	1 cut(s)	1376
BfoI	RGCGCY	1 cut(s)	396
BfrI	CTTAAG	1 cut(s)	568
BglII	AGATCT	2 cut(s)	462, 1859
Bme1390I	CCNGG	5 cut(s)	154, 598, 599, 754, 1426
Bme18I	GGWCC	1 cut(s)	1440
BmeRI	GACNNNNNGTC	1 cut(s)	319
BmeT110I	CYCGRG	1 cut(s)	597
BmgT120I	GGNCC	2 cut(s)	279, 1440
BmiI	GGNNCC	6 cut(s)	394, 408, 1152, 1245, 1653, 1806
BmrFI	CCNGG	5 cut(s)	154, 598, 599, 754, 1426
BmsI	GCATC	8 cut(s)	706, 817, 972, 1241, 1261, 1499, 1567, 1765
BpiI	GAAGAC	1 cut(s)	590
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpmI	CTGGAG	1 cut(s)	136
Bpu14I	TTCGAA	1 cut(s)	378
BpuEI	CTTGAG	3 cut(s)	615, 926, 1517
BpuMI	CCSGG	3 cut(s)	598, 599, 1426
BsaHI	GRCGYC	2 cut(s)	339, 393
BsaJI	CCNNGG	5 cut(s)	153, 285, 597, 1145, 1247
Bsc4I	CCNNNNNNNGG	8 cut(s)	153, 302, 389, 536, 597, 865, 1314, 1528
Bse118I	RCCGGY	1 cut(s)	276
Bse1I	ACTGG	3 cut(s)	1154, 1259, 1850
Bse3DI	GCAATG	3 cut(s)	744, 1302, 1747
BseBI	CCWGG	2 cut(s)	154, 754
BseDI	CCNNGG	5 cut(s)	153, 285, 597, 1145, 1247
BseGI	GGATG	6 cut(s)	767, 1283, 1287, 1485, 1579, 1780
BseLI	CCNNNNNNNGG	8 cut(s)	153, 302, 389, 536, 597, 865, 1314, 1528
BseMI	GCAATG	3 cut(s)	744, 1302, 1747
BseMII	CTCAG	3 cut(s)	1227, 1475, 1699
BseNI	ACTGG	3 cut(s)	1154, 1259, 1850
BseX3I	CGGCCG	1 cut(s)	588
BseXI	GCAGC	9 cut(s)	16, 128, 605, 736, 991, 1351, 1358, 1433, 1567
BsgI	GTGCAG	1 cut(s)	1545
Bsh1285I	CGRYCG	1 cut(s)	591
BshFI	GGCC	7 cut(s)	280, 529, 566, 590, 818, 926, 1131
BshNI	GGYRCC	1 cut(s)	392
BsiEI	CGRYCG	1 cut(s)	591
BsiHKAI	GWGCWC	2 cut(s)	265, 294
BsiHKCI	CYCGRG	1 cut(s)	597
BsiSI	CCGG	5 cut(s)	248, 277, 530, 598, 1426
BslFI	GGGAC	2 cut(s)	170, 1086
BslI	CCNNNNNNNGG	8 cut(s)	153, 302, 389, 536, 597, 865, 1314, 1528
BsmAI	GTCTC	1 cut(s)	1173
BsmFI	GGGAC	2 cut(s)	170, 1086
BsnI	GGCC	7 cut(s)	280, 529, 566, 590, 818, 926, 1131
BsoBI	CYCGRG	1 cut(s)	597
Bsp119I	TTCGAA	1 cut(s)	378
Bsp1286I	GDGCHC	4 cut(s)	265, 294, 348, 973
Bsp1407I	TGTACA	1 cut(s)	450
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	7 cut(s)	207, 274, 282, 396, 481, 719, 1841
BspANI	GGCC	7 cut(s)	280, 529, 566, 590, 818, 926, 1131
BspCNI	CTCAG	3 cut(s)	1228, 1474, 1698
BspLI	GGNNCC	6 cut(s)	394, 408, 1152, 1245, 1653, 1806
BspT104I	TTCGAA	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	392
BspTI	CTTAAG	1 cut(s)	568
BsrDI	GCAATG	3 cut(s)	744, 1302, 1747
BsrFI	RCCGGY	1 cut(s)	276
BsrGI	TGTACA	1 cut(s)	450
BsrI	ACTGG	3 cut(s)	1154, 1259, 1850
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	5 cut(s)	153, 285, 597, 1145, 1247
BssNI	GRCGYC	2 cut(s)	339, 393
BssT1I	CCWWGG	3 cut(s)	285, 1145, 1247
Bst2UI	CCWGG	2 cut(s)	154, 754
Bst4CI	ACNGT	2 cut(s)	727, 1218
Bst6I	CTCTTC	3 cut(s)	22, 56, 1722
BstACI	GRCGYC	2 cut(s)	339, 393
BstAFI	CTTAAG	1 cut(s)	568
BstAPI	GCANNNNNTGC	1 cut(s)	1208
BstAUI	TGTACA	1 cut(s)	450
BstBI	TTCGAA	1 cut(s)	378
BstDEI	CTNAG	5 cut(s)	459, 1236, 1461, 1685, 1812
BstDSI	CCRYGG	1 cut(s)	285
BstEII	GGTNACC	1 cut(s)	1409
BstENI	CCTNNNNNAGG	1 cut(s)	151
BstF5I	GGATG	6 cut(s)	767, 1283, 1287, 1485, 1579, 1780
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	2 cut(s)	395, 1560
BstMAI	GTCTC	1 cut(s)	1173
BstMCI	CGRYCG	1 cut(s)	591
BstMWI	GCNNNNNNNGC	4 cut(s)	356, 551, 728, 1208
BstNI	CCWGG	2 cut(s)	154, 754
BstNSI	RCATGY	1 cut(s)	1067
BstPI	GGTNACC	1 cut(s)	1409
BstSCI	CCNGG	5 cut(s)	152, 596, 597, 752, 1424
BstSFI	CTRYAG	1 cut(s)	1376
BstV1I	GCAGC	9 cut(s)	16, 128, 605, 736, 991, 1351, 1358, 1433, 1567
BstV2I	GAAGAC	1 cut(s)	590
BstX2I	RGATCY	8 cut(s)	406, 462, 1150, 1243, 1612, 1651, 1804, 1859
BstXI	CCANNNNNNTGG	1 cut(s)	651
BstYI	RGATCY	8 cut(s)	406, 462, 1150, 1243, 1612, 1651, 1804, 1859
BstZI	CGGCCG	1 cut(s)	588
BsuRI	GGCC	7 cut(s)	280, 529, 566, 590, 818, 926, 1131
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	6 cut(s)	767, 1283, 1287, 1485, 1579, 1780
BtsI	GCAGTG	1 cut(s)	662
BtsIMutI	CAGTG	3 cut(s)	662, 1266, 1560
CaiI	CAGNNNCTG	1 cut(s)	865
CfoI	GCGC	2 cut(s)	395, 1560
Cfr10I	RCCGGY	1 cut(s)	276
Cfr13I	GGNCC	2 cut(s)	279, 1440
Cfr9I	CCCGGG	1 cut(s)	597
CseI	GACGC	1 cut(s)	871
Csp6I	GTAC	3 cut(s)	451, 850, 910
CspCI	CAANNNNNGTGG	2 cut(s)	1244, 1279
CviAII	CATG	8 cut(s)	286, 758, 1059, 1064, 1133, 1476, 1584, 1747
CviQI	GTAC	3 cut(s)	451, 850, 910
DdeI	CTNAG	5 cut(s)	459, 1236, 1461, 1685, 1812
DinI	GGCGCC	1 cut(s)	394
DriI	GACNNNNNGTC	1 cut(s)	319
EaeI	YGGCCR	4 cut(s)	527, 588, 816, 1129
EagI	CGGCCG	1 cut(s)	588
Eam1104I	CTCTTC	3 cut(s)	22, 56, 1722
Eam1105I	GACNNNNNGTC	1 cut(s)	319
EarI	CTCTTC	3 cut(s)	22, 56, 1722
EciI	GGCGGA	1 cut(s)	263
Ecl136II	GAGCTC	1 cut(s)	292
EclXI	CGGCCG	1 cut(s)	588
Eco130I	CCWWGG	3 cut(s)	285, 1145, 1247
Eco147I	AGGCCT	1 cut(s)	566
Eco24I	GRGCYC	3 cut(s)	294, 348, 973
Eco47I	GGWCC	1 cut(s)	1440
Eco52I	CGGCCG	1 cut(s)	588
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	3 cut(s)	510, 1148, 1584
Eco88I	CYCGRG	1 cut(s)	597
Eco91I	GGTNACC	1 cut(s)	1409
EcoICRI	GAGCTC	1 cut(s)	292
EcoNI	CCTNNNNNAGG	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	1440
EcoO65I	GGTNACC	1 cut(s)	1409
EcoRI	GAATTC	1 cut(s)	1832
EcoRII	CCWGG	2 cut(s)	152, 752
EcoT14I	CCWWGG	3 cut(s)	285, 1145, 1247
EcoT38I	GRGCYC	3 cut(s)	294, 348, 973
EgeI	GGCGCC	1 cut(s)	394
EheI	GGCGCC	1 cut(s)	394
ErhI	CCWWGG	3 cut(s)	285, 1145, 1247
FaeI	CATG	8 cut(s)	289, 761, 1062, 1067, 1136, 1479, 1587, 1750
FalI	AAGNNNNNCTT	4 cut(s)	419, 451, 1783, 1815
FaqI	GGGAC	2 cut(s)	170, 1086
FatI	CATG	8 cut(s)	285, 757, 1058, 1063, 1132, 1475, 1583, 1746
FauI	CCCGC	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	1672
FokI	GGATG	6 cut(s)	774, 1290, 1294, 1492, 1586, 1787
FriOI	GRGCYC	3 cut(s)	294, 348, 973
FspBI	CTAG	7 cut(s)	954, 1008, 1353, 1394, 1676, 1697, 1863
GlaI	GCGC	2 cut(s)	394, 1559
GsuI	CTGGAG	1 cut(s)	136
HaeII	RGCGCY	1 cut(s)	396
HaeIII	GGCC	7 cut(s)	280, 529, 566, 590, 818, 926, 1131
HapII	CCGG	5 cut(s)	248, 277, 530, 598, 1426
HgaI	GACGC	1 cut(s)	871
HhaI	GCGC	2 cut(s)	395, 1560
Hin1I	GRCGYC	2 cut(s)	339, 393
Hin1II	CATG	8 cut(s)	289, 761, 1062, 1067, 1136, 1479, 1587, 1750
Hin6I	GCGC	2 cut(s)	393, 1558
HinP1I	GCGC	2 cut(s)	393, 1558
HincII	GTYRAC	1 cut(s)	1673
HindII	GTYRAC	1 cut(s)	1673
HinfI	GANTC	6 cut(s)	158, 194, 320, 1629, 1679, 1730
HpaII	CCGG	5 cut(s)	248, 277, 530, 598, 1426
HphI	GGTGA	4 cut(s)	82, 442, 1830, 1839
Hpy166II	GTNNAC	3 cut(s)	433, 1266, 1673
Hpy188I	TCNGA	8 cut(s)	217, 301, 411, 1237, 1464, 1688, 1735, 1827
Hpy188III	TCNNGA	7 cut(s)	466, 943, 1394, 1538, 1633, 1642, 1863
Hpy8I	GTNNAC	3 cut(s)	433, 1266, 1673
Hpy99I	CGWCG	7 cut(s)	221, 272, 305, 320, 341, 344, 727
HpyAV	CCTTC	9 cut(s)	103, 144, 421, 556, 1099, 1172, 1289, 1694, 1854
HpyCH4III	ACNGT	2 cut(s)	727, 1218
HpyCH4IV	ACGT	2 cut(s)	223, 339
HpyCH4V	TGCA	7 cut(s)	4, 936, 985, 1058, 1136, 1202, 1526
HpyF10VI	GCNNNNNNNGC	4 cut(s)	356, 551, 728, 1208
HpyF3I	CTNAG	5 cut(s)	459, 1236, 1461, 1685, 1812
HpySE526I	ACGT	2 cut(s)	223, 339
Hsp92I	GRCGYC	2 cut(s)	339, 393
Hsp92II	CATG	8 cut(s)	289, 761, 1062, 1067, 1136, 1479, 1587, 1750
HspAI	GCGC	2 cut(s)	393, 1558
KasI	GGCGCC	1 cut(s)	392
KroI	GCCGGC	1 cut(s)	276
KroNI	GCCGGC	1 cut(s)	278
LmnI	GCTCC	3 cut(s)	149, 289, 297
Lsp1109I	GCAGC	9 cut(s)	16, 128, 605, 736, 991, 1351, 1358, 1433, 1567
LweI	GCATC	8 cut(s)	706, 817, 972, 1241, 1261, 1499, 1567, 1765
MaeI	CTAG	7 cut(s)	954, 1008, 1353, 1394, 1676, 1697, 1863
MaeII	ACGT	2 cut(s)	223, 339
MaeIII	GTNAC	3 cut(s)	311, 1409, 1471
MflI	RGATCY	8 cut(s)	406, 462, 1150, 1243, 1612, 1651, 1804, 1859
MhlI	GDGCHC	4 cut(s)	265, 294, 348, 973
MlsI	TGGCCA	2 cut(s)	818, 1131
MluCI	AATT	9 cut(s)	86, 475, 707, 830, 1319, 1404, 1456, 1533, 1832
MluNI	TGGCCA	2 cut(s)	818, 1131
Mly113I	GGCGCC	1 cut(s)	393
MlyI	GAGTC	5 cut(s)	152, 188, 329, 1673, 1739
MmeI	TCCRAC	6 cut(s)	225, 240, 324, 384, 1221, 1581
Mox20I	TGGCCA	2 cut(s)	818, 1131
MroNI	GCCGGC	1 cut(s)	276
MscI	TGGCCA	2 cut(s)	818, 1131
MseI	TTAA	5 cut(s)	569, 1121, 1140, 1344, 1722
MslI	CAYNNNNRTG	1 cut(s)	1478
Msp20I	TGGCCA	2 cut(s)	818, 1131
MspCI	CTTAAG	1 cut(s)	568
MspI	CCGG	5 cut(s)	248, 277, 530, 598, 1426
MspR9I	CCNGG	5 cut(s)	154, 598, 599, 754, 1426
MvaI	CCWGG	2 cut(s)	154, 754
MwoI	GCNNNNNNNGC	4 cut(s)	356, 551, 728, 1208
NaeI	GCCGGC	1 cut(s)	278
NarI	GGCGCC	1 cut(s)	393
NciI	CCSGG	3 cut(s)	598, 599, 1426
NcoI	CCATGG	1 cut(s)	285
NgoMIV	GCCGGC	1 cut(s)	276
NlaIII	CATG	8 cut(s)	289, 761, 1062, 1067, 1136, 1479, 1587, 1750
NlaIV	GGNNCC	6 cut(s)	394, 408, 1152, 1245, 1653, 1806
NmuCI	GTSAC	2 cut(s)	311, 1471
NspI	RCATGY	1 cut(s)	1067
NspV	TTCGAA	1 cut(s)	378
PceI	AGGCCT	1 cut(s)	566
PdiI	GCCGGC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	1629
PflMI	CCANNNNNTGG	1 cut(s)	865
PleI	GAGTC	5 cut(s)	152, 188, 328, 1673, 1738
PluTI	GGCGCC	1 cut(s)	396
PpsI	GAGTC	5 cut(s)	152, 188, 328, 1673, 1738
PpuMI	RGGWCCY	1 cut(s)	1440
PshBI	ATTAAT	1 cut(s)	1722
Psp124BI	GAGCTC	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	1440
Psp6I	CCWGG	2 cut(s)	152, 752
PspEI	GGTNACC	1 cut(s)	1409
PspGI	CCWGG	2 cut(s)	152, 752
PspN4I	GGNNCC	6 cut(s)	394, 408, 1152, 1245, 1653, 1806
PspPI	GGNCC	2 cut(s)	279, 1440
PspPPI	RGGWCCY	1 cut(s)	1440
PstNI	CAGNNNCTG	1 cut(s)	865
PsuI	RGATCY	8 cut(s)	406, 462, 1150, 1243, 1612, 1651, 1804, 1859
RsaI	GTAC	3 cut(s)	452, 851, 911
RsaNI	GTAC	3 cut(s)	451, 850, 910
RseI	CAYNNNNRTG	1 cut(s)	1478
SacI	GAGCTC	1 cut(s)	294
SalI	GTCGAC	1 cut(s)	1671
SaqAI	TTAA	5 cut(s)	569, 1121, 1140, 1344, 1722
Sau96I	GGNCC	2 cut(s)	279, 1440
SchI	GAGTC	5 cut(s)	152, 188, 329, 1673, 1739
ScrFI	CCNGG	5 cut(s)	154, 598, 599, 754, 1426
SduI	GDGCHC	4 cut(s)	265, 294, 348, 973
SfaNI	GCATC	8 cut(s)	706, 817, 972, 1241, 1261, 1499, 1567, 1765
SfcI	CTRYAG	1 cut(s)	1376
SfoI	GGCGCC	1 cut(s)	394
SfuI	TTCGAA	1 cut(s)	378
SinI	GGWCC	1 cut(s)	1440
SmaI	CCCGGG	1 cut(s)	599
SmiMI	CAYNNNNRTG	1 cut(s)	1478
SmlI	CTYRAG	4 cut(s)	568, 630, 941, 1496
SmoI	CTYRAG	4 cut(s)	568, 630, 941, 1496
SpeI	ACTAGT	1 cut(s)	1352
SrfI	GCCCGGGC	1 cut(s)	599
Sse9I	AATT	9 cut(s)	86, 475, 707, 830, 1319, 1404, 1456, 1533, 1832
SseBI	AGGCCT	1 cut(s)	566
SsiI	CCGC	7 cut(s)	207, 274, 282, 396, 481, 719, 1841
SspDI	GGCGCC	1 cut(s)	392
SspMI	CTAG	7 cut(s)	954, 1008, 1353, 1394, 1676, 1697, 1863
SstI	GAGCTC	1 cut(s)	294
StuI	AGGCCT	1 cut(s)	566
StyD4I	CCNGG	5 cut(s)	152, 596, 597, 752, 1424
StyI	CCWWGG	3 cut(s)	285, 1145, 1247
TaaI	ACNGT	2 cut(s)	727, 1218
TaiI	ACGT	2 cut(s)	226, 342
TaqI	TCGA	8 cut(s)	186, 229, 336, 378, 581, 1196, 1213, 1672
TasI	AATT	9 cut(s)	86, 475, 707, 830, 1319, 1404, 1456, 1533, 1832
TatI	WGTACW	2 cut(s)	450, 849
TauI	GCSGC	3 cut(s)	209, 398, 722
TfiI	GAWTC	1 cut(s)	1629
Tru1I	TTAA	5 cut(s)	569, 1121, 1140, 1344, 1722
Tru9I	TTAA	5 cut(s)	569, 1121, 1140, 1344, 1722
TscAI	CASTG	3 cut(s)	662, 1266, 1567
TseFI	GTSAC	2 cut(s)	311, 1471
TseI	GCWGC	9 cut(s)	4, 141, 618, 749, 1004, 1364, 1371, 1421, 1555
Tsp45I	GTSAC	2 cut(s)	311, 1471
TspDTI	ATGAA	3 cut(s)	1203, 1572, 1740
TspGWI	ACGGA	2 cut(s)	232, 1511
TspMI	CCCGGG	1 cut(s)	597
TspRI	CASTG	3 cut(s)	662, 1266, 1567
Van91I	CCANNNNNTGG	1 cut(s)	865
Vha464I	CTTAAG	1 cut(s)	568
VpaK11BI	GGWCC	1 cut(s)	1440
VspI	ATTAAT	1 cut(s)	1722
XagI	CCTNNNNNAGG	1 cut(s)	151
XapI	RAATTY	5 cut(s)	86, 830, 1456, 1533, 1832
XbaI	TCTAGA	2 cut(s)	1393, 1862
XceI	RCATGY	1 cut(s)	1067
XmaI	CCCGGG	1 cut(s)	597
XmiI	GTMKAC	1 cut(s)	1672
XspI	CTAG	7 cut(s)	954, 1008, 1353, 1394, 1676, 1697, 1863
ZraI	GACGTC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.