Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00120

Orthogroup ID

OG0004751

Physical Location & Seq

Genomic Coordinates Reverse (-)

18943 .. 23797

Gene Structure 4855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G003480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGGAAATACGAGGAGAGCATGTGGATTATTTGATGCGGCGACGGTTGCTGATAAGAAGCACATTGCTGCCTGGAATGGATGGGGAGTTTTAGGGCTAAAGGAACGAAATATCAGCAAGGCATGGCATCTGCTTGCCAAAGGTTTGAAATTTTGTGGTGGGAATGAATACATATACCAGGCACTGGCAAGATTGGAAGCTAAAGCAAGTCGCTATGAGCAGGATCGGTACTTGTTCAGGCAGGCCACTAAATGCAATCCCAAAAGCTATGCTAGTTGGCTTAGATCAATACAGGCAAGCCCAAAGAATAGGTTGGCATGGCATGTTTGGGGACTTTTTGAAGCAAAAATGGGAAATGTTGAGAACGGGAGAAAGTTATTAAAGATTGGCCATGCACTCAATCCAAGGGAACCAATTCTCCTTCAGTCACTTGATTTATTGGAGGCATTATTCTTGTTAGGGGTCCTATACACTGTGCTTAACAACACTTTTTTGACCTCCATTCAATGTGGCAGTACTTCGACGATGGAGCTGTGGCAATGGAGATACTTCATAACCGATATGTGCCTTGAAATGGACACCAAGTTGATGATTGTATCACTCGTTTTGCGATCATTCACGGACATCATTTTCATATGGGACATTATATACCAAATGTATAAGGCTACGGCAATAGCTAATATATGGCGATCAGTTGCAACAGACTTTTTAGCTATACTTCCCGTCCCACAAGTAAGTAAACTTAAATTGAACTTGTCGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009657 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010114 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010608 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031324 GO:0031326 GO:0031967 GO:0031969 GO:0031975 GO:0032069 GO:0032074 GO:0032268 GO:0034248 GO:0034641 GO:0042170 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044092 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051336 GO:0051346 GO:0060255 GO:0060700 GO:0060701 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901917 GO:1901918 GO:1905777 GO:1905778 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_8

Protein Analysis

254

Amino Acids

29.03

Weight (kDa)

9.57

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17040 AT3G17040 AT3G17040 AT3G17040
fragaria_vesca	FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660
malus_domestica	MD13G1154800.v1.1
prunus_persica	Prupe.1G117800_v2.0.a1 Prupe.1G117800_v2.0.a1
pyrus_communis	pycom13g13160
rosa_chinensis	RchiOBHm_Chr4g0425111
rosa_laevigata	RLG00000007402
rosa_multiflora	Rmu_ssc0000420.1_g000027
rosa_roxburghii	Rroxscaffold_1G00031740 Rroxscaffold_5G00367180
rosa_rugosa	Rorug01G0106900 Rorug04G0201600 Rorug04G0201700
rosa_samantha	Rh1AG082100 Rh1BG099300 Rh4AG258300 Rh4BG263900 Rh4CG275000 Rh4DG259800
rosa_wichuraiana	Rw0G003480 Rw1G016170 Rw4G022330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	184
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	2 cut(s)	230, 517
AfiI	CCNNNNNNNGG	2 cut(s)	184, 574
AgsI	TTSAA	5 cut(s)	148, 341, 506, 572, 751
AjnI	CCWGG	2 cut(s)	71, 177
AloI	GAACNNNNNNTCC	2 cut(s)	402, 434
AluBI	AGCT	5 cut(s)	200, 267, 532, 677, 713
AluI	AGCT	5 cut(s)	200, 267, 532, 677, 713
AlwI	GGATC	1 cut(s)	231
AlwNI	CAGNNNCTG	1 cut(s)	184
AoxI	GGCC	2 cut(s)	243, 388
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	463
BalI	TGGCCA	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	2 cut(s)	75, 520
BceAI	ACGGC	1 cut(s)	684
BciT130I	CCWGG	2 cut(s)	73, 179
BfaI	CTAG	1 cut(s)	273
BisI	GCNGC	2 cut(s)	39, 69
BlsI	GCNGC	2 cut(s)	40, 70
BmcAI	AGTACT	1 cut(s)	517
Bme1390I	CCNGG	2 cut(s)	73, 179
Bme18I	GGWCC	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	2 cut(s)	411, 464
BmrFI	CCNGG	2 cut(s)	73, 179
BmsI	GCATC	2 cut(s)	25, 136
BsaJI	CCNNGG	1 cut(s)	404
BsaXI	ACNNNNNCTCC	4 cut(s)	7, 37, 402, 432
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 574
Bse1I	ACTGG	1 cut(s)	189
Bse3DI	GCAATG	2 cut(s)	63, 545
BseBI	CCWGG	2 cut(s)	73, 179
BseDI	CCNNGG	1 cut(s)	404
BseGI	GGATG	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	184, 574
BseMI	GCAATG	2 cut(s)	63, 545
BseNI	ACTGG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	55
BshFI	GGCC	2 cut(s)	245, 390
BslFI	GGGAC	3 cut(s)	345, 653, 710
BslI	CCNNNNNNNGG	2 cut(s)	184, 574
BsmFI	GGGAC	3 cut(s)	345, 653, 710
BsnI	GGCC	2 cut(s)	245, 390
Bsp143I	GATC	4 cut(s)	223, 284, 611, 689
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	2 cut(s)	245, 390
BspLI	GGNNCC	2 cut(s)	411, 464
BspPI	GGATC	1 cut(s)	231
BsrDI	GCAATG	2 cut(s)	63, 545
BsrI	ACTGG	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	4 cut(s)	223, 284, 611, 689
BssT1I	CCWWGG	1 cut(s)	404
Bst2UI	CCWGG	2 cut(s)	73, 179
Bst4CI	ACNGT	2 cut(s)	46, 475
BstC8I	GCNNGC	3 cut(s)	135, 243, 298
BstDEI	CTNAG	1 cut(s)	281
BstF5I	GGATG	1 cut(s)	86
BstKTI	GATC	4 cut(s)	226, 287, 614, 692
BstMBI	GATC	4 cut(s)	223, 284, 611, 689
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	2 cut(s)	73, 179
BstNSI	RCATGY	2 cut(s)	24, 326
BstSCI	CCNGG	2 cut(s)	71, 177
BstV1I	GCAGC	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	245, 390
BtsCI	GGATG	1 cut(s)	86
BtsIMutI	CAGTG	2 cut(s)	182, 471
Cac8I	GCNNGC	3 cut(s)	135, 243, 298
CaiI	CAGNNNCTG	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	463
Csp6I	GTAC	2 cut(s)	229, 516
CviAII	CATG	5 cut(s)	21, 123, 318, 323, 392
CviQI	GTAC	2 cut(s)	229, 516
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	4 cut(s)	225, 286, 613, 691
DpnII	GATC	4 cut(s)	223, 284, 611, 689
EaeI	YGGCCR	1 cut(s)	388
Eco130I	CCWWGG	1 cut(s)	404
Eco47I	GGWCC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	71, 177
EcoT14I	CCWWGG	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	404
FaeI	CATG	5 cut(s)	24, 126, 321, 326, 395
FaqI	GGGAC	3 cut(s)	345, 653, 710
FatI	CATG	5 cut(s)	20, 122, 317, 322, 391
FauNDI	CATATG	1 cut(s)	635
Fnu4HI	GCNGC	2 cut(s)	39, 69
FokI	GGATG	1 cut(s)	93
Fsp4HI	GCNGC	2 cut(s)	39, 69
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	2 cut(s)	39, 69
HaeIII	GGCC	2 cut(s)	245, 390
Hin1II	CATG	5 cut(s)	24, 126, 321, 326, 395
Hpy166II	GTNNAC	1 cut(s)	740
Hpy8I	GTNNAC	1 cut(s)	740
Hpy99I	CGWCG	2 cut(s)	46, 526
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	2 cut(s)	46, 475
HpyCH4V	TGCA	3 cut(s)	255, 395, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	281
Hsp92II	CATG	5 cut(s)	24, 126, 321, 326, 395
Kzo9I	GATC	4 cut(s)	223, 284, 611, 689
LmnI	GCTCC	1 cut(s)	529
LpnPI	CCDG	9 cut(s)	58, 85, 164, 170, 191, 206, 223, 227, 278
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	2 cut(s)	25, 136
MaeI	CTAG	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	426
MalI	GATC	4 cut(s)	225, 286, 613, 691
MboI	GATC	4 cut(s)	223, 284, 611, 689
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	3 cut(s)	149, 414, 746
MluNI	TGGCCA	1 cut(s)	390
MnlI	CCTC	3 cut(s)	6, 436, 508
Mox20I	TGGCCA	1 cut(s)	390
MroXI	GAANNNNTTC	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	390
MseI	TTAA	4 cut(s)	380, 480, 744, 763
Msp20I	TGGCCA	1 cut(s)	390
MspR9I	CCNGG	2 cut(s)	73, 179
MvaI	CCWGG	2 cut(s)	73, 179
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeI	CATATG	1 cut(s)	635
NdeII	GATC	4 cut(s)	223, 284, 611, 689
NlaIII	CATG	5 cut(s)	24, 126, 321, 326, 395
NlaIV	GGNNCC	2 cut(s)	411, 464
NmuCI	GTSAC	1 cut(s)	426
NspI	RCATGY	2 cut(s)	24, 326
PdmI	GAANNNNTTC	1 cut(s)	414
PflMI	CCANNNNNTGG	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	40, 70
PpuMI	RGGWCCY	1 cut(s)	463
Psp5II	RGGWCCY	1 cut(s)	463
Psp6I	CCWGG	2 cut(s)	71, 177
PspGI	CCWGG	2 cut(s)	71, 177
PspN4I	GGNNCC	2 cut(s)	411, 464
PspPI	GGNCC	1 cut(s)	463
PspPPI	RGGWCCY	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	184
RsaI	GTAC	2 cut(s)	230, 517
RsaNI	GTAC	2 cut(s)	229, 516
SaqAI	TTAA	4 cut(s)	380, 480, 744, 763
SatI	GCNGC	2 cut(s)	39, 69
Sau3AI	GATC	4 cut(s)	223, 284, 611, 689
Sau96I	GGNCC	1 cut(s)	463
ScaI	AGTACT	1 cut(s)	517
ScrFI	CCNGG	2 cut(s)	73, 179
SetI	ASST	8 cut(s)	145, 202, 269, 314, 500, 534, 679, 715
SfaNI	GCATC	2 cut(s)	25, 136
SinI	GGWCC	1 cut(s)	463
Sse9I	AATT	3 cut(s)	149, 414, 746
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	2 cut(s)	71, 177
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	2 cut(s)	46, 475
TaqI	TCGA	1 cut(s)	521
TasI	AATT	3 cut(s)	149, 414, 746
TatI	WGTACW	1 cut(s)	515
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	4 cut(s)	380, 480, 744, 763
Tru9I	TTAA	4 cut(s)	380, 480, 744, 763
TscAI	CASTG	2 cut(s)	189, 478
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	3 cut(s)	180, 541, 622
TspGWI	ACGGA	1 cut(s)	635
TspRI	CASTG	2 cut(s)	189, 478
Van91I	CCANNNNNTGG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	463
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	2 cut(s)	24, 326
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	1 cut(s)	273
ZrmI	AGTACT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.