Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004751

Physical Location & Seq

Genomic Coordinates Reverse (-)

35861161 .. 35866272

Gene Structure 5112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G016170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCAGCACTTGAATATGGTCAAGATAGATATACTTTCCTATACACTTATCTTAATACTTAGTTCATCAAGTGATTCAAATTGCACTTCATTTCATAATCTTGCTAACCCTTCAGTAGTAGATCGTCATAAAAACTCAGATGAAAAGAAGAATGGATGGGGAGCATGGCATCTGCTTGCCAAAGGTTTGAAATTTTGTGGTGGGAATGAATACATATACCAGGCACTGGCAAGATTGGAAGCTAAAGCCACTAAATGCAATCCCAAAAGCTATGCTAGTTGGCTTGAAAACAATCGTGCTGCTACCCAACTTTTTGAGAGATCAATACAGGCAAGCCCAAAGAATAGGTTGGCATGGCATGTTTGGGGACTTTTTGAAGCAAAAATGGGAAATGTTGAGAACGGGAGAAAGTTATTAAAGATTGGCCATGCACTCAATCCAAGGGAACCAATTCTCCTTCAGTCACTTGATTTATTGGACCAACATTCAATTACTAGATTAGTAGATTACTATATATCATGCAAAACCCACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009657 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010114 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010608 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031324 GO:0031326 GO:0031967 GO:0031969 GO:0031975 GO:0032069 GO:0032074 GO:0032268 GO:0034248 GO:0034641 GO:0042170 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044092 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051336 GO:0051346 GO:0060255 GO:0060700 GO:0060701 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901917 GO:1901918 GO:1905777 GO:1905778 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_8

Protein Analysis

178

Amino Acids

20.27

Weight (kDa)

9.28

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17040 AT3G17040 AT3G17040 AT3G17040
fragaria_vesca	FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660
malus_domestica	MD13G1154800.v1.1
prunus_persica	Prupe.1G117800_v2.0.a1 Prupe.1G117800_v2.0.a1
pyrus_communis	pycom13g13160
rosa_chinensis	RchiOBHm_Chr4g0425111
rosa_laevigata	RLG00000007402
rosa_multiflora	Rmu_ssc0000420.1_g000027
rosa_roxburghii	Rroxscaffold_1G00031740 Rroxscaffold_5G00367180
rosa_rugosa	Rorug01G0106900 Rorug04G0201600 Rorug04G0201700
rosa_samantha	Rh1AG082100 Rh1BG099300 Rh4AG258300 Rh4BG263900 Rh4CG275000 Rh4DG259800
rosa_wichuraiana	Rw0G003480 Rw1G016170 Rw4G022330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	226
AcoI	YGGCCR	1 cut(s)	424
AcsI	RAATTY	1 cut(s)	191
AcuI	CTGAAG	2 cut(s)	96, 443
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	6 cut(s)	13, 78, 190, 287, 377, 489
AjnI	CCWGG	1 cut(s)	219
AloI	GAACNNNNNNTCC	2 cut(s)	438, 470
AluBI	AGCT	2 cut(s)	242, 270
AluI	AGCT	2 cut(s)	242, 270
AlwNI	CAGNNNCTG	1 cut(s)	226
AoxI	GGCC	1 cut(s)	424
ApeKI	GCWGC	2 cut(s)	4, 299
ApoI	RAATTY	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	478
BalI	TGGCCA	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	16, 286
BccI	CCATC	1 cut(s)	150
BciT130I	CCWGG	1 cut(s)	221
BfaI	CTAG	2 cut(s)	276, 495
BisI	GCNGC	2 cut(s)	5, 300
BlsI	GCNGC	2 cut(s)	6, 301
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	478
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	440
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	2 cut(s)	16, 286
BshFI	GGCC	1 cut(s)	426
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	381
BsnI	GGCC	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	121, 320
BspANI	GGCC	1 cut(s)	426
BspCNI	CTCAG	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	2 cut(s)	121, 320
BssT1I	CCWWGG	1 cut(s)	440
Bst2UI	CCWGG	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	177, 334
BstDEI	CTNAG	2 cut(s)	59, 136
BstF5I	GGATG	1 cut(s)	161
BstKTI	GATC	2 cut(s)	124, 323
BstMBI	GATC	2 cut(s)	121, 320
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	16, 286
BsuRI	GGCC	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	177, 334
CaiI	CAGNNNCTG	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	478
CviAII	CATG	5 cut(s)	165, 354, 359, 428, 519
CviJI	RGCY	6 cut(s)	242, 248, 270, 283, 336, 426
CviKI_1	RGCY	6 cut(s)	242, 248, 270, 283, 336, 426
DdeI	CTNAG	2 cut(s)	59, 136
DpnI	GATC	2 cut(s)	123, 322
DpnII	GATC	2 cut(s)	121, 320
EaeI	YGGCCR	1 cut(s)	424
Eco130I	CCWWGG	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	478
Eco57I	CTGAAG	2 cut(s)	96, 443
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	440
FaeI	CATG	5 cut(s)	168, 357, 362, 431, 522
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	5 cut(s)	164, 353, 358, 427, 518
Fnu4HI	GCNGC	2 cut(s)	5, 300
FokI	GGATG	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	5, 300
FspBI	CTAG	2 cut(s)	276, 495
GluI	GCNGC	2 cut(s)	5, 300
HaeIII	GGCC	1 cut(s)	426
Hin1II	CATG	5 cut(s)	168, 357, 362, 431, 522
HinfI	GANTC	1 cut(s)	74
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	22
HpyAV	CCTTC	2 cut(s)	120, 467
HpyCH4V	TGCA	5 cut(s)	4, 84, 258, 431, 522
HpyF3I	CTNAG	2 cut(s)	59, 136
Hsp92II	CATG	5 cut(s)	168, 357, 362, 431, 522
Kzo9I	GATC	2 cut(s)	121, 320
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	4 cut(s)	206, 212, 233, 314
Lsp1109I	GCAGC	2 cut(s)	16, 286
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	276, 495
MaeIII	GTNAC	1 cut(s)	462
MalI	GATC	2 cut(s)	123, 322
MboI	GATC	2 cut(s)	121, 320
MboII	GAAGA	1 cut(s)	160
MlsI	TGGCCA	1 cut(s)	426
MluCI	AATT	4 cut(s)	79, 191, 450, 489
MluNI	TGGCCA	1 cut(s)	426
Mox20I	TGGCCA	1 cut(s)	426
MroXI	GAANNNNTTC	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	426
MseI	TTAA	3 cut(s)	53, 416, 535
Msp20I	TGGCCA	1 cut(s)	426
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
NdeII	GATC	2 cut(s)	121, 320
NlaIII	CATG	5 cut(s)	168, 357, 362, 431, 522
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	1 cut(s)	462
NspI	RCATGY	1 cut(s)	362
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	74
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	6, 301
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	478
PstNI	CAGNNNCTG	1 cut(s)	226
SaqAI	TTAA	3 cut(s)	53, 416, 535
SatI	GCNGC	2 cut(s)	5, 300
Sau3AI	GATC	2 cut(s)	121, 320
Sau96I	GGNCC	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	4 cut(s)	187, 244, 272, 350
SfaNI	GCATC	1 cut(s)	178
SinI	GGWCC	1 cut(s)	478
Sse9I	AATT	4 cut(s)	79, 191, 450, 489
SspMI	CTAG	2 cut(s)	276, 495
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	440
TasI	AATT	4 cut(s)	79, 191, 450, 489
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	3 cut(s)	53, 416, 535
Tru9I	TTAA	3 cut(s)	53, 416, 535
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	462
TseI	GCWGC	2 cut(s)	4, 299
Tsp45I	GTSAC	1 cut(s)	462
TspDTI	ATGAA	5 cut(s)	54, 78, 83, 156, 222
TspRI	CASTG	1 cut(s)	231
Van91I	CCANNNNNTGG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	1 cut(s)	191
XceI	RCATGY	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	2 cut(s)	276, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.