Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004751

Physical Location & Seq

Genomic Coordinates Forward (+)

44993549 .. 44998376

Gene Structure 4828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00031740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCAAGAAGATCCAATTCAGAAATCATGCTACCGTAAAGGTCTTGAAGCACATTGTCGCTGGAATGGATGGGGAGTTTTAGAGCTAAAGGAAGGAAATATTAGCAAGGCAAGGCATTTGCTTGCCAAAGGTTTGAAATTTTGTGGTGGGAATGAGTACATATACCAGGCACCGGCAAGATTGGAAGCTAAAGCAAGTCGCTATGAGCAGGCTCGGTACTTGTTCGAGCAGGCCACTAAATGCAATCCCAAAAGTTGTGCTAGTTGGCTTGGAACCAGTTCGTTTCGGTCTCTTGCTTTATTGGAGTATGAATACCGAACTACAAATCTTGCTCGACAGTTGTTCGGGCAAGCTTCGAGTTGGATGCAAGGCATTAACAAGTGTGGACGGTGTCTAGACTTGTGTGTCGGGAACATCCGGATAGCCCTCACCGTATTTGGATCTGGGAAAAGTATTTTGGGTGCTTTTCTTTCGGTGGAAATGACTAAATCACCAATTGGGGATGTTAGGGTCATGGGTTCTTTGCTCACACCATCTCTTTTTGGCAAGTTGGAAAAACAATCATTACCTGCTAGGGCACCATTCTTGTTAGGGCTCCTATACACTCGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009657 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010114 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010608 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031324 GO:0031326 GO:0031967 GO:0031969 GO:0031975 GO:0032069 GO:0032074 GO:0032268 GO:0034248 GO:0034641 GO:0042170 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044092 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051336 GO:0051346 GO:0060255 GO:0060700 GO:0060701 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901917 GO:1901918 GO:1905777 GO:1905778 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_8

Protein Analysis

204

Amino Acids

22.7

Weight (kDa)

9.55

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17040 AT3G17040 AT3G17040 AT3G17040
fragaria_vesca	FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660
malus_domestica	MD13G1154800.v1.1
prunus_persica	Prupe.1G117800_v2.0.a1 Prupe.1G117800_v2.0.a1
pyrus_communis	pycom13g13160
rosa_chinensis	RchiOBHm_Chr4g0425111
rosa_laevigata	RLG00000007402
rosa_multiflora	Rmu_ssc0000420.1_g000027
rosa_roxburghii	Rroxscaffold_1G00031740 Rroxscaffold_5G00367180
rosa_rugosa	Rorug01G0106900 Rorug04G0201600 Rorug04G0201700
rosa_samantha	Rh1AG082100 Rh1BG099300 Rh4AG258300 Rh4BG263900 Rh4CG275000 Rh4DG259800
rosa_wichuraiana	Rw0G003480 Rw1G016170 Rw4G022330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	577
AccB1I	GGYRCC	2 cut(s)	169, 577
AccIII	TCCGGA	1 cut(s)	417
AclWI	GGATC	2 cut(s)	5, 448
AcsI	RAATTY	1 cut(s)	137
AfaI	GTAC	2 cut(s)	158, 218
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	47, 136
AjnI	CCWGG	1 cut(s)	165
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AluBI	AGCT	3 cut(s)	85, 188, 353
AluI	AGCT	3 cut(s)	85, 188, 353
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	2 cut(s)	5, 448
Aor13HI	TCCGGA	1 cut(s)	417
AoxI	GGCC	1 cut(s)	231
ApoI	RAATTY	1 cut(s)	137
Asp700I	GAANNNNTTC	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	421, 483
BaeGI	GKGCMC	1 cut(s)	580
BanI	GGYRCC	2 cut(s)	169, 577
BanII	GRGCYC	1 cut(s)	597
BauI	CACGAG	1 cut(s)	606
BccI	CCATC	2 cut(s)	63, 541
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	3 cut(s)	261, 395, 573
BfuAI	ACCTGC	1 cut(s)	577
Bme1390I	CCNGG	1 cut(s)	167
BmiI	GGNNCC	4 cut(s)	171, 274, 579, 596
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	294
BsaWI	WCCGGW	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	276
BseAI	TCCGGA	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	167
BseGI	GGATG	4 cut(s)	74, 369, 414, 508
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	580
BshFI	GGCC	1 cut(s)	233
BshNI	GGYRCC	2 cut(s)	169, 577
BsiSI	CCGG	2 cut(s)	173, 418
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	233
Bso31I	GGTCTC	1 cut(s)	294
Bsp1286I	GDGCHC	2 cut(s)	580, 597
Bsp13I	TCCGGA	1 cut(s)	417
Bsp143I	GATC	2 cut(s)	10, 440
BspANI	GGCC	1 cut(s)	233
BspEI	TCCGGA	1 cut(s)	417
BspLI	GGNNCC	4 cut(s)	171, 274, 579, 596
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	2 cut(s)	5, 448
BspT107I	GGYRCC	2 cut(s)	169, 577
BspTNI	GGTCTC	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	172
BssMI	GATC	2 cut(s)	10, 440
BssSI	CACGAG	1 cut(s)	606
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	4 cut(s)	35, 339, 390, 433
BstC8I	GCNNGC	4 cut(s)	123, 210, 231, 351
BstF5I	GGATG	4 cut(s)	74, 369, 414, 508
BstKTI	GATC	2 cut(s)	13, 443
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	2 cut(s)	10, 440
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	580
BstX2I	RGATCY	2 cut(s)	10, 440
BstYI	RGATCY	2 cut(s)	10, 440
BsuRI	GGCC	1 cut(s)	233
BtsCI	GGATG	4 cut(s)	74, 369, 414, 508
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	4 cut(s)	123, 210, 231, 351
Cfr10I	RCCGGY	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	157, 217
CviAII	CATG	2 cut(s)	27, 514
CviJI	RGCY	8 cut(s)	85, 188, 212, 233, 268, 353, 425, 595
CviKI_1	RGCY	8 cut(s)	85, 188, 212, 233, 268, 353, 425, 595
CviQI	GTAC	2 cut(s)	157, 217
DpnI	GATC	2 cut(s)	12, 442
DpnII	GATC	2 cut(s)	10, 440
DrdI	GACNNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	597
Eco31I	GGTCTC	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	597
FaeI	CATG	2 cut(s)	30, 517
FaiI	YATR	7 cut(s)	28, 161, 163, 204, 309, 515, 601
FatI	CATG	2 cut(s)	26, 513
FokI	GGATG	4 cut(s)	81, 376, 401, 515
FriOI	GRGCYC	1 cut(s)	597
FspBI	CTAG	3 cut(s)	261, 395, 573
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	2 cut(s)	173, 418
Hin1II	CATG	2 cut(s)	30, 517
HindIII	AAGCTT	1 cut(s)	351
HpaII	CCGG	2 cut(s)	173, 418
HphI	GGTGA	2 cut(s)	421, 483
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	4 cut(s)	44, 395, 409, 418
Hpy8I	GTNNAC	1 cut(s)	386
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	4 cut(s)	35, 339, 390, 433
HpyCH4V	TGCA	3 cut(s)	4, 243, 367
Hsp92II	CATG	2 cut(s)	30, 517
Kpn2I	TCCGGA	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	10, 440
LmnI	GCTCC	1 cut(s)	600
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	3 cut(s)	261, 395, 573
MalI	GATC	2 cut(s)	12, 442
MboI	GATC	2 cut(s)	10, 440
MboII	GAAGA	1 cut(s)	20
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	2 cut(s)	10, 440
MhlI	GDGCHC	2 cut(s)	580, 597
MluCI	AATT	3 cut(s)	15, 137, 495
MmeI	TCCRAC	2 cut(s)	341, 531
MnlI	CCTC	1 cut(s)	437
MroI	TCCGGA	1 cut(s)	417
MroXI	GAANNNNTTC	1 cut(s)	277
MseI	TTAA	2 cut(s)	375, 613
MspI	CCGG	2 cut(s)	173, 418
MspR9I	CCNGG	1 cut(s)	167
MunI	CAATTG	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	167
NdeII	GATC	2 cut(s)	10, 440
NlaIII	CATG	2 cut(s)	30, 517
NlaIV	GGNNCC	4 cut(s)	171, 274, 579, 596
PdmI	GAANNNNTTC	1 cut(s)	277
PflFI	GACNNNGTC	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	4 cut(s)	171, 274, 579, 596
PsuI	RGATCY	2 cut(s)	10, 440
PsyI	GACNNNGTC	1 cut(s)	390
RsaI	GTAC	2 cut(s)	158, 218
RsaNI	GTAC	2 cut(s)	157, 217
SaqAI	TTAA	2 cut(s)	375, 613
Sau3AI	GATC	2 cut(s)	10, 440
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	2 cut(s)	580, 597
SetI	ASST	6 cut(s)	43, 87, 133, 190, 355, 571
SfaNI	GCATC	1 cut(s)	354
Sse9I	AATT	3 cut(s)	15, 137, 495
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	3 cut(s)	261, 395, 573
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	4 cut(s)	35, 339, 390, 433
TaqI	TCGA	3 cut(s)	225, 334, 356
TaqII	GACCGA	1 cut(s)	276
TasI	AATT	3 cut(s)	15, 137, 495
TatI	WGTACW	1 cut(s)	156
Tru1I	TTAA	2 cut(s)	375, 613
Tru9I	TTAA	2 cut(s)	375, 613
TspDTI	ATGAA	1 cut(s)	324
Tth111I	GACNNNGTC	1 cut(s)	390
XapI	RAATTY	1 cut(s)	137
XbaI	TCTAGA	1 cut(s)	394
XmnI	GAANNNNTTC	1 cut(s)	277
XspI	CTAG	3 cut(s)	261, 395, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.