Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004751

Physical Location & Seq

Genomic Coordinates Forward (+)

35005887 .. 35006048

Gene Structure 162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0201600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGTTGCAGACTGCCTTGCTAAGGAGAGCATCAATCATGATTATGGGATAATTGAGTTTGATAGCCCTCCCACTCATGCCTCTTCTGCTTACCTTGATGACCTTGATGGTATAACCCGGCAAAGAAGAATCTCTGCCAGGCATGATGATAGGCCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009657 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010114 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010608 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031324 GO:0031326 GO:0031967 GO:0031969 GO:0031975 GO:0032069 GO:0032074 GO:0032268 GO:0034248 GO:0034641 GO:0042170 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044092 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051336 GO:0051346 GO:0060255 GO:0060700 GO:0060701 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901917 GO:1901918 GO:1905777 GO:1905778 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_8

Protein Analysis

53

Amino Acids

5.96

Weight (kDa)

5.0

Isoelectric Point (pI)

64.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17040 AT3G17040 AT3G17040 AT3G17040
fragaria_vesca	FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660
malus_domestica	MD13G1154800.v1.1
prunus_persica	Prupe.1G117800_v2.0.a1 Prupe.1G117800_v2.0.a1
pyrus_communis	pycom13g13160
rosa_chinensis	RchiOBHm_Chr4g0425111
rosa_laevigata	RLG00000007402
rosa_multiflora	Rmu_ssc0000420.1_g000027
rosa_roxburghii	Rroxscaffold_1G00031740 Rroxscaffold_5G00367180
rosa_rugosa	Rorug01G0106900 Rorug04G0201600 Rorug04G0201700
rosa_samantha	Rh1AG082100 Rh1BG099300 Rh4AG258300 Rh4BG263900 Rh4CG275000 Rh4DG259800
rosa_wichuraiana	Rw0G003480 Rw1G016170 Rw4G022330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
AoxI	GGCC	1 cut(s)	152
AsuC2I	CCSGG	1 cut(s)	118
BccI	CCATC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	118
BfaI	CTAG	1 cut(s)	160
Bme1390I	CCNGG	2 cut(s)	118, 139
BmrFI	CCNGG	2 cut(s)	118, 139
BmsI	GCATC	1 cut(s)	39
Bpu10I	CCTNAGC	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	22
BsnI	GGCC	1 cut(s)	154
BspANI	GGCC	1 cut(s)	154
BspHI	TCATGA	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	88
BstDEI	CTNAG	1 cut(s)	21
BstENI	CCTNNNNNAGG	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	2 cut(s)	116, 137
BsuRI	GGCC	1 cut(s)	154
CciI	TCATGA	1 cut(s)	37
CviAII	CATG	3 cut(s)	38, 77, 143
CviJI	RGCY	3 cut(s)	66, 154, 159
CviKI_1	RGCY	3 cut(s)	66, 154, 159
DdeI	CTNAG	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	137
FaeI	CATG	3 cut(s)	41, 80, 146
FaiI	YATR	5 cut(s)	39, 45, 78, 113, 144
FatI	CATG	3 cut(s)	37, 76, 142
FspBI	CTAG	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	1 cut(s)	118
Hin1II	CATG	3 cut(s)	41, 80, 146
HinfI	GANTC	1 cut(s)	129
HpaII	CCGG	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	41, 80, 146
LpnPI	CCDG	3 cut(s)	124, 131, 151
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	1 cut(s)	160
MboII	GAAGA	2 cut(s)	75, 138
MluCI	AATT	1 cut(s)	51
MnlI	CCTC	2 cut(s)	78, 91
MslI	CAYNNNNRTG	1 cut(s)	42
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	2 cut(s)	118, 139
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	1 cut(s)	118
NlaIII	CATG	3 cut(s)	41, 80, 146
PagI	TCATGA	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	42
ScrFI	CCNGG	2 cut(s)	118, 139
SetI	ASST	3 cut(s)	96, 105, 161
SfaNI	GCATC	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	42
Sse9I	AATT	1 cut(s)	51
SspMI	CTAG	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	116, 137
TasI	AATT	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	129
XagI	CCTNNNNNAGG	1 cut(s)	20
XspI	CTAG	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.