Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004751

Physical Location & Seq

Genomic Coordinates Reverse (-)

14116481 .. 14117238

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG082100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTTGCTGATAAGAAGCACATTGCTGCCTGGAATGGATGGGGAGTTTTAGAGCTAAAGGAAGGAAATATTAGCAAGGTAAGGCATCTGCTTGCTAAAGGTTTGAAATTTTGTGGTGGGAATAAGTACATATACCAGGCACTGGCAAGATTGGAAGCTAAAGCAAGTCGCTATGAGCGGTACTTGTTCAGGCAGGCCACTAAATGCAATCCCAAAAGCTATGCTAGTTGGCTTGAAAACAATCGTGCTGCTACCCAATTTTTTGAGAGATCAATACAGGCAAGCCCAAAGAATAGGTTGGCATGGCATGTTTGGGGACATTTTCAAGCAAAAATGGGAAATGTTGAGAACGGGAGAAAGTTATTAAAGATTGGCCATGCACTCAATCCAAGGGAACCAATTCTCCTTCAGTCGCTTGATTTATTGGAGTATGAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009657 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010114 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010608 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031324 GO:0031326 GO:0031967 GO:0031969 GO:0031975 GO:0032069 GO:0032074 GO:0032268 GO:0034248 GO:0034641 GO:0042170 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044092 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051336 GO:0051346 GO:0060255 GO:0060700 GO:0060701 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901917 GO:1901918 GO:1905777 GO:1905778 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_8

Protein Analysis

146

Amino Acids

16.89

Weight (kDa)

9.89

Isoelectric Point (pI)

29.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17040 AT3G17040 AT3G17040 AT3G17040
fragaria_vesca	FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660
malus_domestica	MD13G1154800.v1.1
prunus_persica	Prupe.1G117800_v2.0.a1 Prupe.1G117800_v2.0.a1
pyrus_communis	pycom13g13160
rosa_chinensis	RchiOBHm_Chr4g0425111
rosa_laevigata	RLG00000007402
rosa_multiflora	Rmu_ssc0000420.1_g000027
rosa_roxburghii	Rroxscaffold_1G00031740 Rroxscaffold_5G00367180
rosa_rugosa	Rorug01G0106900 Rorug04G0201600 Rorug04G0201700
rosa_samantha	Rh1AG082100 Rh1BG099300 Rh4AG258300 Rh4BG263900 Rh4CG275000 Rh4DG259800
rosa_wichuraiana	Rw0G003480 Rw1G016170 Rw4G022330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	142
AccBSI	CCGCTC	1 cut(s)	178
AciI	CCGC	1 cut(s)	178
AcoI	YGGCCR	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	2 cut(s)	128, 182
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	3 cut(s)	106, 236, 326
AjnI	CCWGG	2 cut(s)	29, 135
AloI	GAACNNNNNNTCC	2 cut(s)	387, 419
AluBI	AGCT	3 cut(s)	55, 158, 219
AluI	AGCT	3 cut(s)	55, 158, 219
AlwNI	CAGNNNCTG	1 cut(s)	142
AoxI	GGCC	2 cut(s)	195, 373
ApeKI	GCWGC	2 cut(s)	26, 248
ApoI	RAATTY	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	399
BalI	TGGCCA	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	13, 235
BccI	CCATC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	31, 137
BfaI	CTAG	1 cut(s)	225
BisI	GCNGC	2 cut(s)	27, 249
BlsI	GCNGC	2 cut(s)	28, 250
Bme1390I	CCNGG	2 cut(s)	31, 137
BmiI	GGNNCC	1 cut(s)	396
BmrFI	CCNGG	2 cut(s)	31, 137
BmsI	GCATC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	389
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	31, 137
BseDI	CCNNGG	1 cut(s)	389
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	13, 235
BshFI	GGCC	2 cut(s)	197, 375
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	2 cut(s)	197, 375
Bsp143I	GATC	1 cut(s)	269
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	2 cut(s)	197, 375
BspLI	GGNNCC	1 cut(s)	396
BsrBI	CCGCTC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	389
BssMI	GATC	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	389
Bst2UI	CCWGG	2 cut(s)	31, 137
BstC8I	GCNNGC	3 cut(s)	93, 195, 283
BstF5I	GGATG	1 cut(s)	44
BstKTI	GATC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	269
BstNI	CCWGG	2 cut(s)	31, 137
BstNSI	RCATGY	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	29, 135
BstV1I	GCAGC	2 cut(s)	13, 235
BsuRI	GGCC	2 cut(s)	197, 375
BtsCI	GGATG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	3 cut(s)	93, 195, 283
CaiI	CAGNNNCTG	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	127, 181
CviAII	CATG	3 cut(s)	303, 308, 377
CviJI	RGCY	7 cut(s)	55, 158, 197, 219, 232, 285, 375
CviKI_1	RGCY	7 cut(s)	55, 158, 197, 219, 232, 285, 375
CviQI	GTAC	2 cut(s)	127, 181
DpnI	GATC	1 cut(s)	271
DpnII	GATC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	392
EcoRII	CCWGG	2 cut(s)	29, 135
EcoT14I	CCWWGG	1 cut(s)	389
ErhI	CCWWGG	1 cut(s)	389
FaeI	CATG	3 cut(s)	306, 311, 380
FaiI	YATR	8 cut(s)	131, 133, 174, 222, 304, 309, 378, 432
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	3 cut(s)	302, 307, 376
Fnu4HI	GCNGC	2 cut(s)	27, 249
FokI	GGATG	1 cut(s)	51
Fsp4HI	GCNGC	2 cut(s)	27, 249
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	2 cut(s)	27, 249
HaeIII	GGCC	2 cut(s)	197, 375
Hin1II	CATG	3 cut(s)	306, 311, 380
HpyAV	CCTTC	2 cut(s)	56, 416
HpyCH4V	TGCA	2 cut(s)	207, 380
Hsp92II	CATG	3 cut(s)	306, 311, 380
Kzo9I	GATC	1 cut(s)	269
LpnPI	CCDG	8 cut(s)	16, 43, 122, 128, 149, 175, 179, 263
Lsp1109I	GCAGC	2 cut(s)	13, 235
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	225
MalI	GATC	1 cut(s)	271
MbiI	CCGCTC	1 cut(s)	178
MboI	GATC	1 cut(s)	269
MlsI	TGGCCA	1 cut(s)	375
MluCI	AATT	3 cut(s)	107, 257, 399
MluNI	TGGCCA	1 cut(s)	375
Mox20I	TGGCCA	1 cut(s)	375
MroXI	GAANNNNTTC	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	375
MseI	TTAA	1 cut(s)	365
Msp20I	TGGCCA	1 cut(s)	375
MspR9I	CCNGG	2 cut(s)	31, 137
MvaI	CCWGG	2 cut(s)	31, 137
NdeII	GATC	1 cut(s)	269
NlaIII	CATG	3 cut(s)	306, 311, 380
NlaIV	GGNNCC	1 cut(s)	396
NspI	RCATGY	1 cut(s)	311
PdmI	GAANNNNTTC	1 cut(s)	399
PflMI	CCANNNNNTGG	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	28, 250
Psp6I	CCWGG	2 cut(s)	29, 135
PspGI	CCWGG	2 cut(s)	29, 135
PspN4I	GGNNCC	1 cut(s)	396
PstNI	CAGNNNCTG	1 cut(s)	142
RsaI	GTAC	2 cut(s)	128, 182
RsaNI	GTAC	2 cut(s)	127, 181
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	2 cut(s)	27, 249
Sau3AI	GATC	1 cut(s)	269
ScrFI	CCNGG	2 cut(s)	31, 137
SetI	ASST	6 cut(s)	57, 81, 103, 160, 221, 299
SfaNI	GCATC	1 cut(s)	94
Sse9I	AATT	3 cut(s)	107, 257, 399
SsiI	CCGC	1 cut(s)	178
SspI	AATATT	1 cut(s)	70
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	29, 135
StyI	CCWWGG	1 cut(s)	389
TasI	AATT	3 cut(s)	107, 257, 399
TatI	WGTACW	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	2 cut(s)	26, 248
TspRI	CASTG	1 cut(s)	147
Van91I	CCANNNNNTGG	1 cut(s)	142
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.