Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004751

Physical Location & Seq

Genomic Coordinates Reverse (-)

17384550 .. 17385431

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG099300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGAAATACGAGGAGAGCAAAGGACTTATTTGATGCGGCGACGGTTGCTGATAAGAAGCACATTGCTGCCTGGCATGGATGGGGAGTTTTAGAGCTAAAGCAAGGAAATATCAGCAAGACAAGGCATCTGCTTGCCAAAGGTTTGAAATTTTGTGGTGGGAATGAGTACATATACCAAACACTGGCAAGATTGGAAGCTAAAGCATGTCGCTATGAGCAGGCTCGGTACTTGTTCAAGCAGGCCACTAAATGCAATCCCAAAAGCTGTGCTAGTTGGCTTAGATCAATACAGGCAAGCCAAAAGAATAGGTTTGTATGGCATGTTTGGGGACTTTTTGAAGCAAAAATGGGAAATGTTGAGGAGGGGAGAAAGTTATTAAAGATTGGCCATGCACTCAATCCAAGGGATCCAGTTCTCCTTCAGTCTCTTTCTTTATTGGAGTATGAATACTCAACTGCAAATCTTGCTCGACAGTTGTTCAGGCAAGCATCTGAGTTGGATCCAAGGCATCAACAAGTGTGGACCGTAAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009657 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010114 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010608 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031324 GO:0031326 GO:0031967 GO:0031969 GO:0031975 GO:0032069 GO:0032074 GO:0032268 GO:0034248 GO:0034641 GO:0042170 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044092 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051336 GO:0051346 GO:0060255 GO:0060700 GO:0060701 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901917 GO:1901918 GO:1905777 GO:1905778 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_8

Protein Analysis

179

Amino Acids

20.61

Weight (kDa)

9.9

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17040 AT3G17040 AT3G17040 AT3G17040
fragaria_vesca	FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660
malus_domestica	MD13G1154800.v1.1
prunus_persica	Prupe.1G117800_v2.0.a1 Prupe.1G117800_v2.0.a1
pyrus_communis	pycom13g13160
rosa_chinensis	RchiOBHm_Chr4g0425111
rosa_laevigata	RLG00000007402
rosa_multiflora	Rmu_ssc0000420.1_g000027
rosa_roxburghii	Rroxscaffold_1G00031740 Rroxscaffold_5G00367180
rosa_rugosa	Rorug01G0106900 Rorug04G0201600 Rorug04G0201700
rosa_samantha	Rh1AG082100 Rh1BG099300 Rh4AG258300 Rh4BG263900 Rh4CG275000 Rh4DG259800
rosa_wichuraiana	Rw0G003480 Rw1G016170 Rw4G022330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	184
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	4 cut(s)	404, 417, 497, 510
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	2 cut(s)	170, 230
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	3 cut(s)	148, 238, 341
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	3 cut(s)	97, 200, 267
AluI	AGCT	3 cut(s)	97, 200, 267
Alw26I	GTCTC	1 cut(s)	432
AlwI	GGATC	4 cut(s)	404, 417, 497, 510
AoxI	GGCC	2 cut(s)	243, 388
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	525
AvaII	GGWCC	1 cut(s)	525
BalI	TGGCCA	1 cut(s)	390
BamHI	GGATCC	2 cut(s)	409, 502
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	432
BfaI	CTAG	1 cut(s)	273
BisI	GCNGC	2 cut(s)	39, 69
BlsI	GCNGC	2 cut(s)	40, 70
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	525
BmgT120I	GGNCC	1 cut(s)	525
BmiI	GGNNCC	2 cut(s)	411, 504
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	4 cut(s)	25, 136, 500, 520
BsaJI	CCNNGG	2 cut(s)	404, 506
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	2 cut(s)	189, 413
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	73
BseDI	CCNNGG	2 cut(s)	404, 506
BseGI	GGATG	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	189, 413
BseRI	GAGGAG	2 cut(s)	28, 377
BseXI	GCAGC	1 cut(s)	55
BshFI	GGCC	2 cut(s)	245, 390
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	2 cut(s)	245, 390
Bsp143I	GATC	3 cut(s)	284, 409, 502
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	2 cut(s)	245, 390
BspCNI	CTCAG	1 cut(s)	487
BspLI	GGNNCC	2 cut(s)	411, 504
BspPI	GGATC	4 cut(s)	404, 417, 497, 510
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	2 cut(s)	189, 413
BssECI	CCNNGG	2 cut(s)	404, 506
BssMI	GATC	3 cut(s)	284, 409, 502
BssT1I	CCWWGG	2 cut(s)	404, 506
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	3 cut(s)	46, 477, 529
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	5 cut(s)	135, 222, 243, 298, 489
BstDEI	CTNAG	2 cut(s)	281, 495
BstF5I	GGATG	1 cut(s)	86
BstKTI	GATC	3 cut(s)	287, 412, 505
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	3 cut(s)	284, 409, 502
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 467
BstNI	CCWGG	1 cut(s)	73
BstNSI	RCATGY	2 cut(s)	210, 326
BstSCI	CCNGG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	55
BstX2I	RGATCY	2 cut(s)	409, 502
BstYI	RGATCY	2 cut(s)	409, 502
BsuRI	GGCC	2 cut(s)	245, 390
BtsCI	GGATG	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	5 cut(s)	135, 222, 243, 298, 489
Cfr13I	GGNCC	1 cut(s)	525
Csp6I	GTAC	2 cut(s)	169, 229
CspCI	CAANNNNNGTGG	2 cut(s)	503, 538
CviAII	CATG	4 cut(s)	77, 207, 323, 392
CviJI	RGCY	8 cut(s)	97, 200, 224, 245, 267, 280, 300, 390
CviKI_1	RGCY	8 cut(s)	97, 200, 224, 245, 267, 280, 300, 390
CviQI	GTAC	2 cut(s)	169, 229
DdeI	CTNAG	2 cut(s)	281, 495
DpnI	GATC	3 cut(s)	286, 411, 504
DpnII	GATC	3 cut(s)	284, 409, 502
EaeI	YGGCCR	1 cut(s)	388
Eco130I	CCWWGG	2 cut(s)	404, 506
Eco47I	GGWCC	1 cut(s)	525
Eco57I	CTGAAG	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	71
EcoT14I	CCWWGG	2 cut(s)	404, 506
ErhI	CCWWGG	2 cut(s)	404, 506
FaeI	CATG	4 cut(s)	80, 210, 326, 395
FaiI	YATR	9 cut(s)	78, 173, 175, 208, 216, 319, 324, 393, 447
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	4 cut(s)	76, 206, 322, 391
Fnu4HI	GCNGC	2 cut(s)	39, 69
FokI	GGATG	1 cut(s)	93
Fsp4HI	GCNGC	2 cut(s)	39, 69
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	2 cut(s)	39, 69
HaeIII	GGCC	2 cut(s)	245, 390
Hin1II	CATG	4 cut(s)	80, 210, 326, 395
Hpy166II	GTNNAC	1 cut(s)	525
Hpy188I	TCNGA	1 cut(s)	496
Hpy8I	GTNNAC	1 cut(s)	525
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	3 cut(s)	46, 477, 529
HpyCH4V	TGCA	3 cut(s)	255, 395, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 467
HpyF3I	CTNAG	2 cut(s)	281, 495
Hsp92II	CATG	4 cut(s)	80, 210, 326, 395
Kzo9I	GATC	3 cut(s)	284, 409, 502
LpnPI	CCDG	8 cut(s)	58, 85, 170, 206, 227, 278, 426, 469
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	4 cut(s)	25, 136, 500, 520
MaeI	CTAG	1 cut(s)	273
MalI	GATC	3 cut(s)	286, 411, 504
MboI	GATC	3 cut(s)	284, 409, 502
MflI	RGATCY	2 cut(s)	409, 502
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	390
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	3 cut(s)	6, 355, 358
Mox20I	TGGCCA	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	390
MseI	TTAA	1 cut(s)	380
Msp20I	TGGCCA	1 cut(s)	390
MspR9I	CCNGG	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	2 cut(s)	47, 467
NdeII	GATC	3 cut(s)	284, 409, 502
NlaIII	CATG	4 cut(s)	80, 210, 326, 395
NlaIV	GGNNCC	2 cut(s)	411, 504
NspI	RCATGY	2 cut(s)	210, 326
PflMI	CCANNNNNTGG	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	40, 70
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	2 cut(s)	411, 504
PspPI	GGNCC	1 cut(s)	525
PsuI	RGATCY	2 cut(s)	409, 502
RsaI	GTAC	2 cut(s)	170, 230
RsaNI	GTAC	2 cut(s)	169, 229
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	2 cut(s)	39, 69
Sau3AI	GATC	3 cut(s)	284, 409, 502
Sau96I	GGNCC	1 cut(s)	525
ScrFI	CCNGG	1 cut(s)	73
SetI	ASST	5 cut(s)	99, 145, 202, 269, 314
SfaNI	GCATC	4 cut(s)	25, 136, 500, 520
SinI	GGWCC	1 cut(s)	525
Sse9I	AATT	1 cut(s)	149
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	2 cut(s)	404, 506
TaaI	ACNGT	3 cut(s)	46, 477, 529
TaqI	TCGA	1 cut(s)	472
TasI	AATT	1 cut(s)	149
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	1 cut(s)	189
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	462
TspRI	CASTG	1 cut(s)	189
Van91I	CCANNNNNTGG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	525
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	2 cut(s)	210, 326
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.