Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004751

Physical Location & Seq

Genomic Coordinates Reverse (-)

19160748 .. 19167325

Gene Structure 6578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0106900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3876 bp

ATGGCAACGGCAGCGCGGGAAGAGAAGAAGCAGCAGCAGCCCTACGAATCACTAGGCACGGGCGGCAAGTTCCGGAAGACGCCATTCCGAAGAACCACCCAAACGACGCCGTATGACCGGCCCTCCACCGCTCTTCGAAACCCTAGCACTGCAAACGGTGGCTGGATCTCCAAGCTCGTCGATCCCGCTCAGAGGCTTCTTACCTACAGCGCCCACCGCCTATTCTCCACTGTCTTCAATAAACGCCTCCCTCCGCCGCCGCCTTCCACAGAGCCAAATCATGAAGCAAGGATTATGGACAAGGAAGAAGTTGGCATGGATCCTCCTGGAGTGCAAAAAGGTGCCATTGAGCAAAGTACTGATCCAAGATCTACTTCTGCTGGAGACGGGTTTACCTCAGTTGAGCAAATTTTGATGCAGAAAACTTTTACCAGACCTGAAATTGATCGATTGAAAGAGCTCTTGCATTCAAGAACTGATGATATACCTATTGAGAATCAAGAGAAAAGATCTGAAGTATTACCTTCAATGGCAGTGGTATCTCATGACAGAGAGGAATTTGCTAAAACCCCATTGCAAGATAAAAGTGCCAATAGCCACCTTGTTTCAACCCCTGTTGTCAGTACAACTGTCCTTGATGAAGATGTAGCTTCACCTGTAGAGCTGGCAAAAGCTTACATGGGCAGTAGGCCTTCAAAAGTATCCCCATCAATGCTAGGTCTCCGCAGTCAAGCGCTCTATGAAGATTCACATATTTCAAGCAGTGTGACATTTCCTTCCAAATCGCCGCTAATGTCAGTCGTTCCTAGGTTTTCTAGCAATGGGGCGGCACCAGAGAATGGGTTTGCAACCCCTAGATCTCGAGGTAGATCTGCAATACACAGTATGGCTCGTACGCCATACTCTCGAGTTCAGACCCGTAGTACATTTAAGGGTGTTGGGTCTACAGTTGATACTTATGGTGTGCCATCCTCATCATCTCAGTCCATATGGGAGCAAAGCCAACCCTCTGGATCTAAACAAGGGGCCTTAAAGCGAAGGTTCTCAGTGTTAGACAATGACATTGGATCTATTGGTCCTATCCGCAGAATTCGTCCAAAACCTAATCTTCTATCCTCTAGAGGCTTAAGCTCACCAATAAGTACAGAGGTTTTTCAAAACCCTTCATCTTCCACAAGGAGGCCACTTCTGTTGGGTCAACCCAAGCATACTCTGGCAAAAGCATCATCAGAAAATGGAGACAATGCAGTTCCTAGCACAAGTTTTTCAACCGTTCCGTCACAATCCAGCAAGGCGGCTTCCAAAATCTTTGAGCATCTCGATAAGATCACCTCTCCGAAAGAGAAATCATCTGAGCCCAAGATACTTACTGTGAGAGATAGATCACCAACTAAGCTGTCGCCCTCCATGCTACGTGGTCAGGCTCTGAAAAGCCTGGAGGATGTGGATACATCAAAATTTCTGGAAAATGCCCGTTATAATAATGGGAATAATTTGGATGTTTCATCTAATCAACGGATACCAGATGTTACTTCTCAAAAGCATGACAAGGTTAAAGAAAATGGTCCATCAAGGATTGCTGCTCCTTGTGACAGTTCAACTACCTTTGCCAATGAAGTAGAATCCAGAACAGAAAAGGATGTTGTGATAAAAGTTAAAGCTGCAGTTTCTGCTGCATCAAACACTGTTGCGCATCCTTCTGAAAAGAAACGGGCCTTCAAGATGAGTGCTCATGAGTATCTGGAGCTGGATGATGATGATTATTCCAATAATGGTCATGCGTCTGGTTCAATTGCTGATGGGAGAGTAAAGGTGGATAAGATTGCAGCTGCTAAACCAGAGAAGCCTGTAGCTTCCACTGAAGTCAAACCTCCTGCATCTTTTGCAATAAACCAGAAGCCTGATAGCGGAACATCTGACGGTGTATATACAGTTGCACCTGGCGCAACAGATACCGTACCAAAACCAGTGGAATCAGATAAAGCTGATGAGAATAATTCAGATGTTGAAGTCCCTTTTAGGGTACCAGAAACTCTTGTGTCATCATCATCATCAGCAACCACGAGCATATTTTCTACCACTTCTCAAGTTTCCAACAATTTAGCAAGTCAAAGTTCTTTGGGCAGCATGGCCCCCACTGCCAACACTAACAGCGGTAACAACATTGCTGCTGCTAGTGCCGTTACCACCAGCGGTAGCAATCGTTTTAGCTCAGTTTCAGCACCATCCTTTTCAGCCGAACCTTTTTTTAAATTTTCAGTCTCTACCACAACTGAGGTGACACAAGTTCCAGAAAATTCTTCCTTGGAATCGTTAGGAGACAAGAACAAGCGAGATGGCAGTTTTGCTAATCTAAGCGGCACGTCTTTTGCTGGCACATCTGCTATCAGTGCAGGCACAGGAAGTAGCTTTTTGGGGGTTTCTGCTGCTGCTTCCTCCCCTGCTGCTACCAATCAGTTGGGTTCTACTTCTTTTAGTTCTGGAAGTGGATTCGGTCCTAGTGCCCAGGCATCACCCGGAATGTCCTTCAAATTTGAACCCTCAACTGCTTCAACTGCAGTAACGCCAGGAAGTTCTTCCTTGGAATTCTTAAATGATAAGAACAAGCAAGGCGGGATCTTTGGTAGTTTAAGCAGTACCTCGTCTGCTGGCACATCTACAACAAGTGCAAGCACATTGAGCAACAGTTCTGGGTTTTCTGCTGCTGCTTCAACGCCTATCTTTACCAGTCAGTCAGTGGGTTCTGCTCTTTTTAGTGGTGGCAGTGGAACTAGTTATAGTGCCCACGTGTCACCTGCTGGGACTGGAGCTGCATCTTTCACACAGAGTGCACCTGTTCAACCTGGTTCATCAGCTTCCAGTTCGGTATTTAATTTTGCAGGAAATACAGCTTTCTCTTCTGGGAGCTCTGCGCTCGGTTCTTCTACCCCCTCTTCTGAAGCCAACCCTAGCAGCTCCAGTACTGCTCCAAGTACTGTATTCGGTAGCGGGTGGCAACCTGCTACATCTTCTTCTACCTCTTCTGAAGCCAACCCTAGCAGTTCCAGTACGGCTCCAAGTACTGTATTCAGTAGTGGGTGGCAACCTGCTACATCTTCAAAATTTGCTTCCACACTAAACTCTACATCTTTCTCACCAGCATTTCAATTCGGTGCATCCTCAGCCTCTGCTGCAACCAACACTACATCTACTTCATTTGGAGCATCCTCGACTTCTGCTGCTACTTCTAACAGTGCAGCCACAGTATTTGGAATGCCCTCCACTTCTGCTCCTACGTCCAACAGTTTGCCTACTTTGTTTGGAGCATCCACAGTTTCTTCTCCAAGTACCAACAGCGCATCGGTGTTTGGATTGTCCAATGGTGCATCATCAACCGGCATGTTCCCCTTTACATCATCTGCAACTACTACTACCCCATCACAGCCTGCATTTGGTAACTCCAACTCTATATTTGGCTTCTCTACAGCTCCCTCGGGTAATAATGATCAAATGAGTATGGAAGACAGCATGGCTGAAGACAGCATGGCTGCATCTCCGCCTACAGTTGCAGTCTTTGGTCAACAGCCTTCCTCAACCACGCAGTCTACACCAACATTCCCAGTGTTTGGCCAGCAGCCTGTGTCAACCCCACAATCCCCCTTTGTATTTGGAGGTTCCTCTTCCTCCAATGGCTTCCAGTTTCAGAGCCAACCAAACCAATCCAACTCACAGAACCCTCCACTGTTTCAGGGTTCCAATAGTTTAGCCAACTCGCAGAACCCTGCACCATTTCAGGATAGCCTAGGTTTGACCTCCAATAGCTTCTCATTGGGTGCCGCTGATAAGTCTAATAGAAGGATTGTGAGGGTTAATCGCAGCAAGAACAGGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009657 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010114 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010608 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031324 GO:0031326 GO:0031967 GO:0031969 GO:0031975 GO:0032069 GO:0032074 GO:0032268 GO:0034248 GO:0034641 GO:0042170 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044092 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051336 GO:0051346 GO:0060255 GO:0060700 GO:0060701 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901917 GO:1901918 GO:1905777 GO:1905778 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_8

Protein Analysis

1291

Amino Acids

134.0

Weight (kDa)

9.18

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17040 AT3G17040 AT3G17040 AT3G17040
fragaria_vesca	FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660 FvH4_4g19660
malus_domestica	MD13G1154800.v1.1
prunus_persica	Prupe.1G117800_v2.0.a1 Prupe.1G117800_v2.0.a1
pyrus_communis	pycom13g13160
rosa_chinensis	RchiOBHm_Chr4g0425111
rosa_laevigata	RLG00000007402
rosa_multiflora	Rmu_ssc0000420.1_g000027
rosa_roxburghii	Rroxscaffold_1G00031740 Rroxscaffold_5G00367180
rosa_rugosa	Rorug01G0106900 Rorug04G0201600 Rorug04G0201700
rosa_samantha	Rh1AG082100 Rh1BG099300 Rh4AG258300 Rh4BG263900 Rh4CG275000 Rh4DG259800
rosa_wichuraiana	Rw0G003480 Rw1G016170 Rw4G022330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1479
AarI	CACCTGC	1 cut(s)	2803
Acc16I	TGCGCA	1 cut(s)	1692
Acc36I	ACCTGC	3 cut(s)	2803, 3007, 3094
Acc65I	GGTACC	1 cut(s)	2023
AccB1I	GGYRCC	4 cut(s)	341, 829, 2023, 3812
AccB7I	CCANNNNNTGG	2 cut(s)	839, 3605
AccBSI	CCGCTC	2 cut(s)	131, 188
AccI	GTMKAC	2 cut(s)	944, 3584
AccII	CGCG	1 cut(s)	16
AccIII	TCCGGA	1 cut(s)	72
AclWI	GGATC	8 cut(s)	173, 176, 314, 327, 356, 1021, 1075, 2624
AcoI	YGGCCR	1 cut(s)	3607
AcsI	RAATTY	9 cut(s)	408, 557, 1089, 1457, 2252, 2296, 2531, 2585, 3101
AcuI	CTGAAG	5 cut(s)	534, 1881, 2958, 3045, 3534
AcvI	CACGTG	1 cut(s)	2788
AcyI	GRCGYC	2 cut(s)	80, 107
AdeI	CACNNNGTG	1 cut(s)	2828
AfeI	AGCGCT	1 cut(s)	735
AfiI	CCNNNNNNNGG	7 cut(s)	192, 839, 1179, 1907, 2020, 3431, 3605
AflII	CTTAAG	1 cut(s)	1126
AflIII	ACRYGT	1 cut(s)	2787
AhlI	ACTAGT	1 cut(s)	2771
AjiI	CACGTC	1 cut(s)	2364
AjnI	CCWGG	6 cut(s)	325, 1434, 1939, 2505, 2566, 2842
AjuI	GAANNNNNNNTTGG	2 cut(s)	358, 390
Alw21I	GWGCWC	4 cut(s)	462, 1732, 2833, 2909
Alw26I	GTCTC	5 cut(s)	378, 725, 1233, 2266, 2313
Alw44I	GTGCAC	1 cut(s)	2829
AlwI	GGATC	8 cut(s)	173, 176, 314, 327, 356, 1021, 1075, 2624
AlwNI	CAGNNNCTG	3 cut(s)	1426, 1670, 3167
Ama87I	CYCGRG	3 cut(s)	861, 906, 3472
Aor13HI	TCCGGA	1 cut(s)	72
Aor51HI	AGCGCT	1 cut(s)	735
AoxI	GGCC	7 cut(s)	119, 689, 1026, 1181, 1713, 2130, 3607
ApaLI	GTGCAC	1 cut(s)	2829
ApoI	RAATTY	9 cut(s)	408, 557, 1089, 1457, 2252, 2296, 2531, 2585, 3101
Asp700I	GAANNNNTTC	1 cut(s)	2575
Asp718I	GGTACC	1 cut(s)	2023
AspA2I	CCTAGG	2 cut(s)	806, 3781
AspLEI	GCGC	7 cut(s)	16, 212, 736, 1693, 1946, 2914, 3338
AspS9I	GGNCC	7 cut(s)	120, 1026, 1076, 1565, 1713, 2131, 2495
AsuC2I	CCSGG	1 cut(s)	2517
AsuHPI	GGTGA	8 cut(s)	645, 1125, 1321, 1377, 2290, 2505, 2784, 3126
AsuII	TTCGAA	1 cut(s)	136
AvaI	CYCGRG	3 cut(s)	861, 906, 3472
AvaII	GGWCC	3 cut(s)	1076, 1565, 2495
AvrII	CCTAGG	2 cut(s)	806, 3781
BaeGI	GKGCMC	3 cut(s)	2506, 2785, 2833
BalI	TGGCCA	1 cut(s)	3609
BamHI	GGATCC	1 cut(s)	319
BanI	GGYRCC	4 cut(s)	341, 829, 2023, 3812
BanII	GRGCYC	3 cut(s)	462, 1359, 2909
BauI	CACGAG	1 cut(s)	2062
BbrPI	CACGTG	1 cut(s)	2788
BbsI	GAAGAC	4 cut(s)	83, 226, 3507, 3522
Bbv12I	GWGCWC	4 cut(s)	462, 1732, 2833, 2909
BbvCI	CCTCAGC	1 cut(s)	3160
BccI	CCATC	7 cut(s)	715, 976, 1576, 1793, 2233, 2330, 3424
BceAI	ACGGC	4 cut(s)	24, 94, 2165, 3066
BciT130I	CCWGG	6 cut(s)	327, 1436, 1941, 2507, 2568, 2844
BciVI	GTATCC	3 cut(s)	712, 1441, 1512
BclI	TGATCA	1 cut(s)	3484
BcnI	CCSGG	1 cut(s)	2517
BcoDI	GTCTC	5 cut(s)	378, 725, 1233, 2266, 2313
BcuI	ACTAGT	1 cut(s)	2771
BfmI	CTRYAG	8 cut(s)	205, 657, 945, 1662, 1848, 2556, 3462, 3540
BfoI	RGCGCY	2 cut(s)	213, 737
BfrI	CTTAAG	1 cut(s)	1126
BfuAI	ACCTGC	3 cut(s)	2803, 3007, 3094
BfuI	GTATCC	3 cut(s)	712, 1441, 1512
BglII	AGATCT	4 cut(s)	368, 509, 857, 869
BlnI	CCTAGG	2 cut(s)	806, 3781
BmcAI	AGTACT	4 cut(s)	358, 2962, 2974, 3061
Bme1390I	CCNGG	7 cut(s)	327, 1436, 1941, 2507, 2517, 2568, 2844
Bme18I	GGWCC	3 cut(s)	1076, 1565, 2495
BmeT110I	CYCGRG	3 cut(s)	861, 906, 3472
BmgBI	CACGTC	1 cut(s)	2364
BmgT120I	GGNCC	7 cut(s)	120, 1026, 1076, 1565, 1713, 2131, 2495
BmrFI	CCNGG	7 cut(s)	327, 1436, 1941, 2507, 2517, 2568, 2844
BmrI	ACTGGG	1 cut(s)	3593
BmuI	ACTGGG	1 cut(s)	3593
BpiI	GAAGAC	4 cut(s)	83, 226, 3507, 3522
BpmI	CTGGAG	6 cut(s)	348, 402, 1457, 1763, 2826, 2941
Bpu10I	CCTNAGC	1 cut(s)	3160
Bpu14I	TTCGAA	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	2070
BpuMI	CCSGG	1 cut(s)	2517
Bsa29I	ATCGAT	1 cut(s)	448
BsaAI	YACGTR	2 cut(s)	1415, 2788
BsaHI	GRCGYC	2 cut(s)	80, 107
BsaI	GGTCTC	1 cut(s)	725
BsaJI	CCNNGG	6 cut(s)	806, 2304, 2505, 2580, 3471, 3781
BsaWI	WCCGGW	1 cut(s)	72
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 3253, 3283
Bsc4I	CCNNNNNNNGG	7 cut(s)	192, 839, 1179, 1907, 2020, 3431, 3605
Bse118I	RCCGGY	2 cut(s)	117, 3374
Bse1I	ACTGG	8 cut(s)	1967, 2727, 2809, 2859, 2958, 3045, 3599, 3676
Bse3DI	GCAATG	3 cut(s)	572, 826, 2163
BseAI	TCCGGA	1 cut(s)	72
BseBI	CCWGG	6 cut(s)	327, 1436, 1941, 2507, 2568, 2844
BseCI	ATCGAT	1 cut(s)	448
BseDI	CCNNGG	6 cut(s)	806, 2304, 2505, 2580, 3471, 3781
BseLI	CCNNNNNNNGG	7 cut(s)	192, 839, 1179, 1907, 2020, 3431, 3605
BseMI	GCAATG	3 cut(s)	572, 826, 2163
BseMII	CTCAG	8 cut(s)	203, 411, 995, 1059, 1344, 2226, 2265, 3174
BseNI	ACTGG	8 cut(s)	1967, 2727, 2809, 2859, 2958, 3045, 3599, 3676
BseSI	GKGCMC	3 cut(s)	2506, 2785, 2833
BseYI	CCCAGC	1 cut(s)	2798
BsgI	GTGCAG	3 cut(s)	2412, 3255, 3747
Bsh1236I	CGCG	1 cut(s)	16
BshFI	GGCC	7 cut(s)	121, 691, 1028, 1183, 1715, 2132, 3609
BshNI	GGYRCC	4 cut(s)	341, 829, 2023, 3812
BshVI	ATCGAT	1 cut(s)	448
BsiHKAI	GWGCWC	4 cut(s)	462, 1732, 2833, 2909
BsiHKCI	CYCGRG	3 cut(s)	861, 906, 3472
BsiSI	CCGG	4 cut(s)	73, 118, 2517, 3375
BsiWI	CGTACG	1 cut(s)	893
BslFI	GGGAC	2 cut(s)	1997, 2815
BslI	CCNNNNNNNGG	7 cut(s)	192, 839, 1179, 1907, 2020, 3431, 3605
BsmAI	GTCTC	5 cut(s)	378, 725, 1233, 2266, 2313
BsmBI	CGTCTC	1 cut(s)	378
BsmFI	GGGAC	2 cut(s)	1997, 2815
BsmI	GAATGC	2 cut(s)	466, 3258
BsnI	GGCC	7 cut(s)	121, 691, 1028, 1183, 1715, 2132, 3609
Bso31I	GGTCTC	1 cut(s)	725
BsoBI	CYCGRG	3 cut(s)	861, 906, 3472
Bsp119I	TTCGAA	1 cut(s)	136
Bsp1286I	GDGCHC	7 cut(s)	462, 1359, 1732, 2506, 2785, 2833, 2909
Bsp13I	TCCGGA	1 cut(s)	72
BspANI	GGCC	7 cut(s)	121, 691, 1028, 1183, 1715, 2132, 3609
BspCNI	CTCAG	8 cut(s)	202, 410, 994, 1058, 1345, 2225, 2266, 3173
BspDI	ATCGAT	1 cut(s)	448
BspEI	TCCGGA	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	16
BspHI	TCATGA	3 cut(s)	280, 544, 1732
BspMAI	CTGCAG	2 cut(s)	1666, 2560
BspMI	ACCTGC	3 cut(s)	2803, 3007, 3094
BspPI	GGATC	8 cut(s)	173, 176, 314, 327, 356, 1021, 1075, 2624
BspQI	GCTCTTC	1 cut(s)	138
BspT104I	TTCGAA	1 cut(s)	136
BspT107I	GGYRCC	4 cut(s)	341, 829, 2023, 3812
BspTI	CTTAAG	1 cut(s)	1126
BspTNI	GGTCTC	1 cut(s)	725
BsrBI	CCGCTC	2 cut(s)	131, 188
BsrDI	GCAATG	3 cut(s)	572, 826, 2163
BsrFI	RCCGGY	2 cut(s)	117, 3374
BsrI	ACTGG	8 cut(s)	1967, 2727, 2809, 2859, 2958, 3045, 3599, 3676
BssAI	RCCGGY	2 cut(s)	117, 3374
BssECI	CCNNGG	6 cut(s)	806, 2304, 2505, 2580, 3471, 3781
BssNI	GRCGYC	2 cut(s)	80, 107
BssSI	CACGAG	1 cut(s)	2062
BssT1I	CCWWGG	4 cut(s)	806, 2304, 2580, 3781
Bst2BI	CACGAG	1 cut(s)	2062
Bst2UI	CCWGG	6 cut(s)	327, 1436, 1941, 2507, 2568, 2844
Bst6I	CTCTTC	6 cut(s)	15, 138, 2902, 2938, 3025, 3664
BstACI	GRCGYC	2 cut(s)	80, 107
BstAFI	CTTAAG	1 cut(s)	1126
BstAPI	GCANNNNNTGC	2 cut(s)	1670, 1883
BstBAI	YACGTR	2 cut(s)	1415, 2788
BstBI	TTCGAA	1 cut(s)	136
BstC8I	GCNNGC	7 cut(s)	666, 2374, 2395, 2650, 2671, 3426, 3611
BstFNI	CGCG	1 cut(s)	16
BstH2I	RGCGCY	2 cut(s)	213, 737
BstHHI	GCGC	7 cut(s)	16, 212, 736, 1693, 1946, 2914, 3338
BstMAI	GTCTC	5 cut(s)	378, 725, 1233, 2266, 2313
BstNI	CCWGG	6 cut(s)	327, 1436, 1941, 2507, 2568, 2844
BstNSI	RCATGY	1 cut(s)	3382
BstSCI	CCNGG	7 cut(s)	325, 1434, 1939, 2505, 2515, 2566, 2842
BstSFI	CTRYAG	8 cut(s)	205, 657, 945, 1662, 1848, 2556, 3462, 3540
BstSLI	GKGCMC	3 cut(s)	2506, 2785, 2833
BstUI	CGCG	1 cut(s)	16
BstV2I	GAAGAC	4 cut(s)	83, 226, 3507, 3522
BstX2I	RGATCY	9 cut(s)	165, 319, 368, 509, 857, 869, 1013, 1067, 2616
BstXI	CCANNNNNNTGG	2 cut(s)	1010, 2458
BstYI	RGATCY	9 cut(s)	165, 319, 368, 509, 857, 869, 1013, 1067, 2616
Bsu15I	ATCGAT	1 cut(s)	448
BsuI	GTATCC	3 cut(s)	712, 1441, 1512
BsuRI	GGCC	7 cut(s)	121, 691, 1028, 1183, 1715, 2132, 3609
BsuTUI	ATCGAT	1 cut(s)	448
BtrI	CACGTC	1 cut(s)	2364
BtsI	GCAGTG	5 cut(s)	147, 540, 769, 2136, 2770
BveI	ACCTGC	3 cut(s)	2803, 3007, 3094
Cac8I	GCNNGC	7 cut(s)	666, 2374, 2395, 2650, 2671, 3426, 3611
CaiI	CAGNNNCTG	3 cut(s)	1426, 1670, 3167
CciI	TCATGA	3 cut(s)	280, 544, 1732
CfoI	GCGC	7 cut(s)	16, 212, 736, 1693, 1946, 2914, 3338
Cfr10I	RCCGGY	2 cut(s)	117, 3374
Cfr13I	GGNCC	7 cut(s)	120, 1026, 1076, 1565, 1713, 2131, 2495
ClaI	ATCGAT	1 cut(s)	448
CseI	GACGC	3 cut(s)	88, 115, 1770
CsiI	ACCWGGT	1 cut(s)	2842
CspCI	CAANNNNNGTGG	8 cut(s)	516, 551, 1173, 1208, 1950, 1985, 3229, 3264
DraI	TTTAAA	1 cut(s)	2251
DraIII	CACNNNGTG	1 cut(s)	2828
EaeI	YGGCCR	1 cut(s)	3607
Eam1104I	CTCTTC	6 cut(s)	15, 138, 2902, 2938, 3025, 3664
EarI	CTCTTC	6 cut(s)	15, 138, 2902, 2938, 3025, 3664
EciI	GGCGGA	2 cut(s)	243, 3525
Ecl136II	GAGCTC	2 cut(s)	460, 2907
Eco130I	CCWWGG	4 cut(s)	806, 2304, 2580, 3781
Eco147I	AGGCCT	1 cut(s)	691
Eco24I	GRGCYC	3 cut(s)	462, 1359, 2909
Eco31I	GGTCTC	1 cut(s)	725
Eco47I	GGWCC	3 cut(s)	1076, 1565, 2495
Eco47III	AGCGCT	1 cut(s)	735
Eco53kI	GAGCTC	2 cut(s)	460, 2907
Eco57I	CTGAAG	5 cut(s)	534, 1881, 2958, 3045, 3534
Eco72I	CACGTG	1 cut(s)	2788
Eco88I	CYCGRG	3 cut(s)	861, 906, 3472
EcoICRI	GAGCTC	2 cut(s)	460, 2907
EcoO109I	RGGNCCY	1 cut(s)	1026
EcoRI	GAATTC	2 cut(s)	1089, 2585
EcoRII	CCWGG	6 cut(s)	325, 1434, 1939, 2505, 2566, 2842
EcoT14I	CCWWGG	4 cut(s)	806, 2304, 2580, 3781
EcoT38I	GRGCYC	3 cut(s)	462, 1359, 2909
ErhI	CCWWGG	4 cut(s)	806, 2304, 2580, 3781
Esp3I	CGTCTC	1 cut(s)	378
FalI	AAGNNNNNCTT	2 cut(s)	358, 390
FaqI	GGGAC	2 cut(s)	1997, 2815
FauI	CCCGC	4 cut(s)	9, 193, 2606, 2981
FauNDI	CATATG	1 cut(s)	989
FbaI	TGATCA	1 cut(s)	3484
FblI	GTMKAC	2 cut(s)	944, 3584
FriOI	GRGCYC	3 cut(s)	462, 1359, 2909
FspI	TGCGCA	1 cut(s)	1692
GlaI	GCGC	7 cut(s)	15, 211, 735, 1692, 1945, 2913, 3337
GsaI	CCCAGC	1 cut(s)	2802
GsuI	CTGGAG	6 cut(s)	348, 402, 1457, 1763, 2826, 2941
HaeII	RGCGCY	2 cut(s)	213, 737
HaeIII	GGCC	7 cut(s)	121, 691, 1028, 1183, 1715, 2132, 3609
HapII	CCGG	4 cut(s)	73, 118, 2517, 3375
HgaI	GACGC	3 cut(s)	88, 115, 1770
HhaI	GCGC	7 cut(s)	16, 212, 736, 1693, 1946, 2914, 3338
Hin1I	GRCGYC	2 cut(s)	80, 107
Hin6I	GCGC	7 cut(s)	14, 210, 734, 1691, 1944, 2912, 3336
HinP1I	GCGC	7 cut(s)	14, 210, 734, 1691, 1944, 2912, 3336
HincII	GTYRAC	3 cut(s)	1199, 3560, 3624
HindII	GTYRAC	3 cut(s)	1199, 3560, 3624
HindIII	AAGCTT	1 cut(s)	672
HinfI	GANTC	7 cut(s)	47, 496, 746, 1622, 1973, 2309, 2490
HpaII	CCGG	4 cut(s)	73, 118, 2517, 3375
HphI	GGTGA	8 cut(s)	645, 1125, 1321, 1377, 2290, 2505, 2784, 3126
Hpy166II	GTNNAC	7 cut(s)	393, 945, 1199, 2831, 3560, 3585, 3624
Hpy8I	GTNNAC	7 cut(s)	393, 945, 1199, 2831, 3560, 3585, 3624
Hpy99I	CGWCG	2 cut(s)	109, 182
HpyCH4IV	ACGT	4 cut(s)	1414, 2363, 2787, 3275
HpySE526I	ACGT	4 cut(s)	1414, 2363, 2787, 3275
Hsp92I	GRCGYC	2 cut(s)	80, 107
HspAI	GCGC	7 cut(s)	14, 210, 734, 1691, 1944, 2912, 3336
Kpn2I	TCCGGA	1 cut(s)	72
KpnI	GGTACC	1 cut(s)	2027
Ksp22I	TGATCA	1 cut(s)	3484
LguI	GCTCTTC	1 cut(s)	138
MabI	ACCWGGT	1 cut(s)	2842
MaeII	ACGT	4 cut(s)	1414, 2363, 2787, 3275
MbiI	CCGCTC	2 cut(s)	131, 188
MfeI	CAATTG	1 cut(s)	1791
MflI	RGATCY	9 cut(s)	165, 319, 368, 509, 857, 869, 1013, 1067, 2616
MhlI	GDGCHC	7 cut(s)	462, 1359, 1732, 2506, 2785, 2833, 2909
MlsI	TGGCCA	1 cut(s)	3609
MluNI	TGGCCA	1 cut(s)	3609
MmeI	TCCRAC	4 cut(s)	2118, 3303, 3465, 3726
Mox20I	TGGCCA	1 cut(s)	3609
MroI	TCCGGA	1 cut(s)	72
MroXI	GAANNNNTTC	1 cut(s)	2575
MscI	TGGCCA	1 cut(s)	3609
Msp20I	TGGCCA	1 cut(s)	3609
MspA1I	CMGCKG	4 cut(s)	1829, 2154, 2193, 3818
MspCI	CTTAAG	1 cut(s)	1126
MspI	CCGG	4 cut(s)	73, 118, 2517, 3375
MspR9I	CCNGG	7 cut(s)	327, 1436, 1941, 2507, 2517, 2568, 2844
MunI	CAATTG	1 cut(s)	1791
Mva1269I	GAATGC	2 cut(s)	466, 3258
MvaI	CCWGG	6 cut(s)	327, 1436, 1941, 2507, 2568, 2844
MvnI	CGCG	1 cut(s)	16
NciI	CCSGG	1 cut(s)	2517
NdeI	CATATG	1 cut(s)	989
NmuCI	GTSAC	5 cut(s)	766, 1278, 1589, 2278, 2790
NsbI	TGCGCA	1 cut(s)	1692
NspI	RCATGY	1 cut(s)	3382
NspV	TTCGAA	1 cut(s)	136
PaeR7I	CTCGAG	2 cut(s)	861, 906
PagI	TCATGA	3 cut(s)	280, 544, 1732
PaqCI	CACCTGC	1 cut(s)	2803
PceI	AGGCCT	1 cut(s)	691
PciSI	GCTCTTC	1 cut(s)	138
PctI	GAATGC	2 cut(s)	466, 3258
PdmI	GAANNNNTTC	1 cut(s)	2575
PfeI	GAWTC	7 cut(s)	47, 496, 746, 1622, 1973, 2309, 2490
Pfl23II	CGTACG	1 cut(s)	893
PflMI	CCANNNNNTGG	2 cut(s)	839, 3605
PfoI	TCCNGGA	1 cut(s)	325
PmaCI	CACGTG	1 cut(s)	2788
PmlI	CACGTG	1 cut(s)	2788
Ppu21I	YACGTR	2 cut(s)	1415, 2788
PsiI	TTATAA	1 cut(s)	1479
Psp124BI	GAGCTC	2 cut(s)	462, 2909
Psp6I	CCWGG	6 cut(s)	325, 1434, 1939, 2505, 2566, 2842
PspCI	CACGTG	1 cut(s)	2788
PspFI	CCCAGC	1 cut(s)	2798
PspGI	CCWGG	6 cut(s)	325, 1434, 1939, 2505, 2566, 2842
PspLI	CGTACG	1 cut(s)	893
PspPI	GGNCC	7 cut(s)	120, 1026, 1076, 1565, 1713, 2131, 2495
PstI	CTGCAG	2 cut(s)	1666, 2560
PstNI	CAGNNNCTG	3 cut(s)	1426, 1670, 3167
PsuI	RGATCY	9 cut(s)	165, 319, 368, 509, 857, 869, 1013, 1067, 2616
PvuII	CAGCTG	1 cut(s)	1829
SacI	GAGCTC	2 cut(s)	462, 2909
SapI	GCTCTTC	1 cut(s)	138
Sau96I	GGNCC	7 cut(s)	120, 1026, 1076, 1565, 1713, 2131, 2495
ScaI	AGTACT	4 cut(s)	358, 2962, 2974, 3061
ScrFI	CCNGG	7 cut(s)	327, 1436, 1941, 2507, 2517, 2568, 2844
SduI	GDGCHC	7 cut(s)	462, 1359, 1732, 2506, 2785, 2833, 2909
SexAI	ACCWGGT	1 cut(s)	2842
SfcI	CTRYAG	8 cut(s)	205, 657, 945, 1662, 1848, 2556, 3462, 3540
Sfr274I	CTCGAG	2 cut(s)	861, 906
SfuI	TTCGAA	1 cut(s)	136
SinI	GGWCC	3 cut(s)	1076, 1565, 2495
SlaI	CTCGAG	2 cut(s)	861, 906
SmlI	CTYRAG	4 cut(s)	861, 906, 1126, 2085
SmoI	CTYRAG	4 cut(s)	861, 906, 1126, 2085
SpeI	ACTAGT	1 cut(s)	2771
SseBI	AGGCCT	1 cut(s)	691
SstI	GAGCTC	2 cut(s)	462, 2909
StuI	AGGCCT	1 cut(s)	691
StyD4I	CCNGG	7 cut(s)	325, 1434, 1939, 2505, 2515, 2566, 2842
StyI	CCWWGG	4 cut(s)	806, 2304, 2580, 3781
TaiI	ACGT	4 cut(s)	1417, 2366, 2790, 3278
TaqI	TCGA	7 cut(s)	136, 180, 448, 862, 907, 1320, 3209
TaqII	GACCGA	1 cut(s)	2483
TatI	WGTACW	7 cut(s)	356, 623, 923, 1142, 2960, 2972, 3059
TauI	GCSGC	8 cut(s)	66, 259, 262, 790, 830, 1298, 2361, 3818
TfiI	GAWTC	7 cut(s)	47, 496, 746, 1622, 1973, 2309, 2490
TseFI	GTSAC	5 cut(s)	766, 1278, 1589, 2278, 2790
Tsp45I	GTSAC	5 cut(s)	766, 1278, 1589, 2278, 2790
TspDTI	ATGAA	8 cut(s)	297, 654, 756, 1155, 1494, 1629, 2838, 3183
TspGWI	ACGGA	2 cut(s)	1266, 1531
Van91I	CCANNNNNTGG	2 cut(s)	839, 3605
Vha464I	CTTAAG	1 cut(s)	1126
VneI	GTGCAC	1 cut(s)	2829
VpaK11BI	GGWCC	3 cut(s)	1076, 1565, 2495
XapI	RAATTY	9 cut(s)	408, 557, 1089, 1457, 2252, 2296, 2531, 2585, 3101
XbaI	TCTAGA	1 cut(s)	1118
XceI	RCATGY	1 cut(s)	3382
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1210, 2734
XhoI	CTCGAG	2 cut(s)	861, 906
XmaJI	CCTAGG	2 cut(s)	806, 3781
XmiI	GTMKAC	2 cut(s)	944, 3584
XmnI	GAANNNNTTC	1 cut(s)	2575
ZrmI	AGTACT	4 cut(s)	358, 2962, 2974, 3061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.