Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004701

Physical Location & Seq

Genomic Coordinates Reverse (-)

16528070 .. 16530226

Gene Structure 2157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007407

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCAGATTTGGACGACGATTTTGGAGACATCTACACTGATGTCGAAGCTGAAGGTTTCGTCTCCGATTCTGAGAAACCCAAAGAGGAATTGGGTGGTAAAGTTTCGGGTTCGGAGTCGGATGAGGATTACAGTGACAGTGAGGATGACCTGAATATAGTTTTGAACGATGGGGGCTGTAAAGGCATTCCCTTTCCGGTTTCAGGTGGAGGGGGCATGAGGATTGATGATTATGAAGATGAGGATGATGATGCTCTTGTGGCCTTGAAAGATTGCAAGTATGTATGGACTCAAGGATCTACTTGTCCAAGCAATGGAAAAGCCAATGAGTCTCTGGATTTGGTGTCGTTCGGAGGAGACCACTCGCAGATTAGTCGTGTAAGTGATACACCTAATCCAGTGGTGACTCGAAAAGTCGAAATAGATATGGTTTTTGACTTCCTTGGTATAGGACCATACTGGACGTGGATATTGAATCATTTGAGGAGAAGTCGTGGAGCACGTTCTGGCAGGAACAACTTCGGCAGCTCAAGTCCACGCAGTATGGCATGCCTGGCTCTTCAAAATTTTATCAGGCTAAAGAAGCTGGATCTGAGTATGGCAGATTCACCCAGGAAAGAAATGAATTATGCTGGATCATGGGCATATGCTCCTCCGTCATCAACAGTTTCTGATTGCAGACCAAAAGGGAATGCAATTCAGATAGAAGATAGTGTTGTTGAACGCCAACCATCTCTTGATAGTTGGGATCCCATGTACATTAGGGGCGGTGGGTGGTTGCGCGTGAGGTGGTTGATGATGACGCGTATGGAGTGGAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Fip1

Protein Analysis

275

Amino Acids

30.51

Weight (kDa)

4.57

Isoelectric Point (pI)

54.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66652 AT3G66652 AT3G66652
fragaria_vesca	FvH4_4g19650 FvH4_4g19650 FvH4_4g19650 FvH4_4g19650 FvH4_4g19650 FvH4_4g19650
malus_domestica	MD13G1154900.v1.1 MD16G1154500.v1.1
prunus_persica	Prupe.1G117900_v2.0.a1
pyrus_communis	pycom13g13170 pycom16g13090
rosa_chinensis	RchiOBHm_Chr4g0425101
rosa_laevigata	RLG00000007403 RLG00000007404 RLG00000007405 RLG00000007407
rosa_multiflora	Rmu_ssc0000420.1_g000015 Rmu_ssc0000420.1_g000026
rosa_roxburghii	Rroxscaffold_5G00367170
rosa_rugosa	Rorug04G0200900 Rorug04G0201400 Rorug04G0201400 Rorug04G0201500
rosa_samantha	Rh4AG258200 Rh4BG263800 Rh4CG274900 Rh4DG259700
rosa_wichuraiana	Rw4G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccII	CGCG	2 cut(s)	783, 805
AciI	CCGC	1 cut(s)	768
AclWI	GGATC	5 cut(s)	304, 597, 643, 743, 756
AcsI	RAATTY	1 cut(s)	565
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	1 cut(s)	758
AfiI	CCNNNNNNNGG	2 cut(s)	203, 314
AflIII	ACRYGT	1 cut(s)	803
AgsI	TTSAA	5 cut(s)	166, 268, 475, 563, 722
AjiI	CACGTC	1 cut(s)	465
AjnI	CCWGG	2 cut(s)	552, 611
AluBI	AGCT	3 cut(s)	50, 528, 586
AluI	AGCT	3 cut(s)	50, 528, 586
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	4 cut(s)	21, 67, 336, 351
AlwI	GGATC	5 cut(s)	304, 597, 643, 743, 756
AlwNI	CAGNNNCTG	1 cut(s)	671
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	525
ApoI	RAATTY	1 cut(s)	565
ArsI	GACNNNNNNTTYG	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	783
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	415, 600
AvaII	GGWCC	1 cut(s)	452
BamHI	GGATCC	1 cut(s)	748
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	1 cut(s)	537
BccI	CCATC	2 cut(s)	164, 739
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciT130I	CCWGG	2 cut(s)	554, 613
BcoDI	GTCTC	4 cut(s)	21, 67, 336, 351
BisI	GCNGC	1 cut(s)	526
BlsI	GCNGC	1 cut(s)	527
Bme1390I	CCNGG	2 cut(s)	554, 613
Bme18I	GGWCC	1 cut(s)	452
BmgBI	CACGTC	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	1 cut(s)	750
BmrFI	CCNGG	2 cut(s)	554, 613
BmsI	GCATC	1 cut(s)	241
BpuEI	CTTGAG	2 cut(s)	276, 514
BsaI	GGTCTC	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	442, 611
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 314
Bse1I	ACTGG	2 cut(s)	398, 464
Bse3DI	GCAATG	1 cut(s)	319
BseBI	CCWGG	2 cut(s)	554, 613
BseDI	CCNNGG	2 cut(s)	442, 611
BseGI	GGATG	3 cut(s)	127, 151, 250
BseLI	CCNNNNNNNGG	2 cut(s)	203, 314
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	2 cut(s)	63, 584
BseNI	ACTGG	2 cut(s)	398, 464
BseRI	GAGGAG	3 cut(s)	369, 499, 642
BseXI	GCAGC	1 cut(s)	537
Bsh1236I	CGCG	2 cut(s)	783, 805
BshFI	GGCC	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	502
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	203, 314
BsmAI	GTCTC	4 cut(s)	21, 67, 336, 351
BsmBI	CGTCTC	1 cut(s)	67
BsmI	GAATGC	2 cut(s)	186, 697
BsnI	GGCC	1 cut(s)	263
Bso31I	GGTCTC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp1407I	TGTACA	1 cut(s)	756
Bsp143I	GATC	4 cut(s)	296, 589, 635, 748
BspACI	CCGC	1 cut(s)	768
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	2 cut(s)	64, 585
BspFNI	CGCG	2 cut(s)	783, 805
BspLI	GGNNCC	1 cut(s)	750
BspPI	GGATC	5 cut(s)	304, 597, 643, 743, 756
BspQI	GCTCTTC	1 cut(s)	564
BspTNI	GGTCTC	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	319
BsrGI	TGTACA	1 cut(s)	756
BsrI	ACTGG	2 cut(s)	398, 464
BssECI	CCNNGG	2 cut(s)	442, 611
BssMI	GATC	4 cut(s)	296, 589, 635, 748
BssT1I	CCWWGG	1 cut(s)	442
Bst2UI	CCWGG	2 cut(s)	554, 613
Bst4CI	ACNGT	3 cut(s)	134, 140, 667
Bst6I	CTCTTC	1 cut(s)	564
BstAUI	TGTACA	1 cut(s)	756
BstC8I	GCNNGC	1 cut(s)	550
BstDEI	CTNAG	2 cut(s)	72, 593
BstF5I	GGATG	3 cut(s)	127, 151, 250
BstFNI	CGCG	2 cut(s)	783, 805
BstHHI	GCGC	1 cut(s)	783
BstKTI	GATC	4 cut(s)	299, 592, 638, 751
BstMAI	GTCTC	4 cut(s)	21, 67, 336, 351
BstMBI	GATC	4 cut(s)	296, 589, 635, 748
BstMWI	GCNNNNNNNGC	4 cut(s)	183, 260, 554, 583
BstNI	CCWGG	2 cut(s)	554, 613
BstNSI	RCATGY	1 cut(s)	552
BstSCI	CCNGG	2 cut(s)	552, 611
BstUI	CGCG	2 cut(s)	783, 805
BstV1I	GCAGC	1 cut(s)	537
BstX2I	RGATCY	3 cut(s)	296, 589, 748
BstYI	RGATCY	3 cut(s)	296, 589, 748
BsuRI	GGCC	1 cut(s)	263
BtrI	CACGTC	1 cut(s)	465
BtsCI	GGATG	3 cut(s)	127, 151, 250
BtsIMutI	CAGTG	4 cut(s)	36, 139, 145, 405
Cac8I	GCNNGC	1 cut(s)	550
CaiI	CAGNNNCTG	1 cut(s)	671
CfoI	GCGC	1 cut(s)	783
Cfr13I	GGNCC	1 cut(s)	452
CseI	GACGC	1 cut(s)	811
Csp6I	GTAC	1 cut(s)	757
CviAII	CATG	4 cut(s)	217, 549, 639, 754
CviJI	RGCY	8 cut(s)	50, 177, 263, 323, 528, 557, 577, 586
CviKI_1	RGCY	8 cut(s)	50, 177, 263, 323, 528, 557, 577, 586
CviQI	GTAC	1 cut(s)	757
DdeI	CTNAG	2 cut(s)	72, 593
DpnI	GATC	4 cut(s)	298, 591, 637, 750
DpnII	GATC	4 cut(s)	296, 589, 635, 748
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Eco130I	CCWWGG	1 cut(s)	442
Eco31I	GGTCTC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	452
Eco57I	CTGAAG	1 cut(s)	72
EcoRII	CCWGG	2 cut(s)	552, 611
EcoT14I	CCWWGG	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	442
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	4 cut(s)	220, 552, 642, 757
FatI	CATG	4 cut(s)	216, 548, 638, 753
FauNDI	CATATG	1 cut(s)	646
Fnu4HI	GCNGC	1 cut(s)	526
FokI	GGATG	3 cut(s)	134, 158, 257
Fsp4HI	GCNGC	1 cut(s)	526
GlaI	GCGC	1 cut(s)	782
GluI	GCNGC	1 cut(s)	526
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	811
HhaI	GCGC	1 cut(s)	783
Hin1II	CATG	4 cut(s)	220, 552, 642, 757
Hin6I	GCGC	1 cut(s)	781
HinP1I	GCGC	1 cut(s)	781
HinfI	GANTC	7 cut(s)	68, 116, 289, 329, 406, 475, 605
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	415, 600
Hpy166II	GTNNAC	1 cut(s)	536
Hpy188I	TCNGA	8 cut(s)	67, 73, 115, 121, 353, 594, 673, 702
Hpy188III	TCNNGA	2 cut(s)	335, 737
Hpy8I	GTNNAC	1 cut(s)	536
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	3 cut(s)	134, 140, 667
HpyCH4IV	ACGT	2 cut(s)	464, 502
HpyCH4V	TGCA	3 cut(s)	276, 678, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	183, 260, 554, 583
HpyF3I	CTNAG	2 cut(s)	72, 593
HpySE526I	ACGT	2 cut(s)	464, 502
Hsp92II	CATG	4 cut(s)	220, 552, 642, 757
HspAI	GCGC	1 cut(s)	781
Kzo9I	GATC	4 cut(s)	296, 589, 635, 748
LguI	GCTCTTC	1 cut(s)	564
LmnI	GCTCC	2 cut(s)	497, 655
Lsp1109I	GCAGC	1 cut(s)	537
LweI	GCATC	1 cut(s)	241
MaeII	ACGT	2 cut(s)	464, 502
MaeIII	GTNAC	2 cut(s)	134, 403
MalI	GATC	4 cut(s)	298, 591, 637, 750
MboI	GATC	4 cut(s)	296, 589, 635, 748
MboII	GAAGA	3 cut(s)	248, 551, 719
MflI	RGATCY	3 cut(s)	296, 589, 748
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	4 cut(s)	89, 565, 625, 696
MluI	ACGCGT	1 cut(s)	803
MlyI	GAGTC	4 cut(s)	125, 283, 338, 400
MmeI	TCCRAC	1 cut(s)	99
MroXI	GAANNNNTTC	1 cut(s)	518
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	554, 613
Mva1269I	GAATGC	2 cut(s)	186, 697
MvaI	CCWGG	2 cut(s)	554, 613
MvnI	CGCG	2 cut(s)	783, 805
MwoI	GCNNNNNNNGC	4 cut(s)	183, 260, 554, 583
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	4 cut(s)	296, 589, 635, 748
NlaIII	CATG	4 cut(s)	220, 552, 642, 757
NlaIV	GGNNCC	1 cut(s)	750
NmuCI	GTSAC	2 cut(s)	134, 403
NspI	RCATGY	1 cut(s)	552
PaeI	GCATGC	1 cut(s)	552
PciSI	GCTCTTC	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	1 cut(s)	499
PctI	GAATGC	2 cut(s)	186, 697
PdmI	GAANNNNTTC	1 cut(s)	518
PfeI	GAWTC	3 cut(s)	68, 475, 605
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	527
PleI	GAGTC	4 cut(s)	124, 283, 337, 400
PpsI	GAGTC	4 cut(s)	124, 283, 337, 400
Psp6I	CCWGG	2 cut(s)	552, 611
PspGI	CCWGG	2 cut(s)	552, 611
PspN4I	GGNNCC	1 cut(s)	750
PspPI	GGNCC	1 cut(s)	452
PstNI	CAGNNNCTG	1 cut(s)	671
PsuI	RGATCY	3 cut(s)	296, 589, 748
RsaI	GTAC	1 cut(s)	758
RsaNI	GTAC	1 cut(s)	757
SapI	GCTCTTC	1 cut(s)	564
SatI	GCNGC	1 cut(s)	526
Sau3AI	GATC	4 cut(s)	296, 589, 635, 748
Sau96I	GGNCC	1 cut(s)	452
SchI	GAGTC	4 cut(s)	125, 283, 338, 400
ScrFI	CCNGG	2 cut(s)	554, 613
SduI	GDGCHC	1 cut(s)	502
SfaNI	GCATC	1 cut(s)	241
SinI	GGWCC	1 cut(s)	452
SmlI	CTYRAG	2 cut(s)	291, 529
SmoI	CTYRAG	2 cut(s)	291, 529
SphI	GCATGC	1 cut(s)	552
Sse9I	AATT	4 cut(s)	89, 565, 625, 696
SsiI	CCGC	1 cut(s)	768
StyD4I	CCNGG	2 cut(s)	552, 611
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	3 cut(s)	134, 140, 667
TaiI	ACGT	2 cut(s)	467, 505
TaqI	TCGA	3 cut(s)	45, 409, 417
TasI	AATT	4 cut(s)	89, 565, 625, 696
TatI	WGTACW	1 cut(s)	756
TfiI	GAWTC	3 cut(s)	68, 475, 605
TscAI	CASTG	4 cut(s)	43, 139, 145, 405
TseFI	GTSAC	2 cut(s)	134, 403
TseI	GCWGC	1 cut(s)	525
Tsp45I	GTSAC	2 cut(s)	134, 403
TspDTI	ATGAA	2 cut(s)	249, 638
TspGWI	ACGGA	1 cut(s)	645
TspRI	CASTG	4 cut(s)	43, 139, 145, 405
Van91I	CCANNNNNTGG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	1 cut(s)	565
XceI	RCATGY	1 cut(s)	552
XcmI	CCANNNNNNNNNTGG	3 cut(s)	88, 331, 462
XmnI	GAANNNNTTC	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.