Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000420.1

Orthogroup ID

OG0004701

Physical Location & Seq

Genomic Coordinates Forward (+)

87009 .. 87410

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000420.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atggcagatttggacgaagatttcggagacatctatactgatgtcgaagcgcaggccacttcagtcatcaatggcgtatcggacttcgctcagttctgtatagaacccgaagaagatagaaatgatagtaacaacaatgcaaagaacagcgagggtttcgtctccgattctaagaaacccaaagaggaattgggtggtaaagtttcgggtattccctttccggtttcagatggaggggccatgaggatagatgattatgaagatgaggatgatgatgatcttgtggccttgaaagattgcaaggtattctattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Fip1

Protein Analysis

104

Amino Acids

11.43

Weight (kDa)

4.05

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66652 AT3G66652 AT3G66652
fragaria_vesca	FvH4_4g19650 FvH4_4g19650 FvH4_4g19650 FvH4_4g19650 FvH4_4g19650 FvH4_4g19650
malus_domestica	MD13G1154900.v1.1 MD16G1154500.v1.1
prunus_persica	Prupe.1G117900_v2.0.a1
pyrus_communis	pycom13g13170 pycom16g13090
rosa_chinensis	RchiOBHm_Chr4g0425101
rosa_laevigata	RLG00000007403 RLG00000007404 RLG00000007405 RLG00000007407
rosa_multiflora	Rmu_ssc0000420.1_g000015 Rmu_ssc0000420.1_g000026
rosa_roxburghii	Rroxscaffold_5G00367170
rosa_rugosa	Rorug04G0200900 Rorug04G0201400 Rorug04G0201400 Rorug04G0201500
rosa_samantha	Rh4AG258200 Rh4BG263800 Rh4CG274900 Rh4DG259700
rosa_wichuraiana	Rw4G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	292
Alw26I	GTCTC	2 cut(s)	21, 166
AoxI	GGCC	3 cut(s)	54, 237, 285
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	237
BccI	CCATC	1 cut(s)	224
BcoDI	GTCTC	2 cut(s)	21, 166
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	220
Bse8I	GATNNNNATC	1 cut(s)	276
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	104
BshFI	GGCC	3 cut(s)	56, 239, 287
BsiSI	CCGG	1 cut(s)	221
BsmAI	GTCTC	2 cut(s)	21, 166
BsmBI	CGTCTC	1 cut(s)	166
BsnI	GGCC	3 cut(s)	56, 239, 287
Bsp143I	GATC	1 cut(s)	277
BspANI	GGCC	3 cut(s)	56, 239, 287
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	238
BssMI	GATC	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	90, 171
BstF5I	GGATG	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	2 cut(s)	21, 166
BstMBI	GATC	1 cut(s)	277
BsuRI	GGCC	3 cut(s)	56, 239, 287
BtsCI	GGATG	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	54
CfoI	GCGC	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	237
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	3 cut(s)	56, 239, 287
CviKI_1	RGCY	3 cut(s)	56, 239, 287
DdeI	CTNAG	2 cut(s)	90, 171
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	1 cut(s)	244
FaiI	YATR	4 cut(s)	36, 101, 242, 258
FatI	CATG	1 cut(s)	240
FokI	GGATG	1 cut(s)	281
GlaI	GCGC	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	56, 239, 287
HapII	CCGG	1 cut(s)	221
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	1 cut(s)	221
Hpy188I	TCNGA	4 cut(s)	26, 82, 166, 229
HpyCH4V	TGCA	2 cut(s)	140, 300
HpyF3I	CTNAG	2 cut(s)	90, 171
Hsp92II	CATG	1 cut(s)	244
HspAI	GCGC	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	277
LpnPI	CCDG	2 cut(s)	38, 234
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	4 cut(s)	29, 122, 125, 272
MluCI	AATT	1 cut(s)	188
MnlI	CCTC	5 cut(s)	145, 178, 227, 237, 259
MspI	CCGG	1 cut(s)	221
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	1 cut(s)	237
SetI	ASST	1 cut(s)	306
SgeI	CNNG	8 cut(s)	65, 119, 163, 219, 233, 253, 293, 301
Sse9I	AATT	1 cut(s)	188
TaqI	TCGA	1 cut(s)	45
TasI	AATT	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.