Rh4DG259700

Fip1 motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0004701
Physical Location & Seq
Forward (+)
47716342 .. 47723095
6754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG259700.1

Sequence Viewer

Length: 3165 bp
ATGGCAGATTTGGACGACGATTTCGGAGACATCTACACTGATGTCGAAGCGCAGGCCGCTTCAGCCATCAACGGCGTATCGGACTTCGCGCAGTTCTATACAGAACCCGAAGACCAGCAAGATAGAAATGATAGTAACAACAATGCAAAGAACGGCAAGGGTTTCGTCTCCGATTCTAAGAAACCCAAAGAGGAATTGGGTGGTAAAGTTTCGGGTTCGGAGTCGGATGAGGATTACAGTGACAGTGAGGATGACCTGAATATAGTTTTGAACGATGGGGGTTGTAAAGGTATTCCCTTTCCGGTTTCAGGTGGAGGGAGCATGAGGGTTGATGATTATGAAGATGAGGATGATGATGCTCTTGTGCCCATGAAAGATTGCAAGTATGTATGGACTCAAGGATCTACTTGTCCAAGCAATGGAAAAGCCAATGAGTCTTTGGATTTGGTGTCGCCTATACCGTTTGGAGGAGACCACTCGCAGATTAGTCGTGTTCGTGATACACCTAATCCAGTGGTGATTCGAAATAGATATGGTTTTCGACTTCCTTGGTATAGGACCATACTGGACGTGGATATTGAATCATTTGAGGAGAAGTCATGGAGCTATCCTGAAGTTGATATAACAGATTACTTCAATTTTGATTTGAACGAGGACAGCTGGAAAGAGTACTGCAACTCCCTGGAACAACTTCGGCAGCTGAAATCCACACAGTATGGCATGCCTGGCTCTTCAAAATTTTATCAGGCTAAAGAACCTGGATCTGAGTATGGCAGATTCACCCAGGAAACTATGCCTAAAGAAATGAATTATGCTGGATCATGGACATATGCTCCTCCGTCATCAAAAGTTTCTGATTTCAGACCAAAAGGGAAAGCAATTCAGATAGAAGATAGTGTTGTTGAACGCCAACCATCTTTTGATAGTAGGCATCCACGAAGTTGGAATTCTGATGTTGTGATACAGATTTCTGTGCATGATCCCACCCAGGAAACCTCCCATTCTGGTGAGGAACATGGGCATACAAATAGCAGGGCCCATGAGACATCTGAAAATGGGGAGCTTGATGCAAATGGAAACCAAAACAATATCTCATATAATACTACGACCGATGATGATTCATCATTAGGAAGTCCAGAAGCAAACACAAGAAAATTAGACAGATGTTCCCAGAAGATCAGTGCATCCCATTCAATGACAATAGACTCCGATGATCACGGTAACCAGGTCATTGGTTTTGATGGGGATAACCATAAGGAGGTGAATGGTATCTCATTGGAGGCCATTGAAATTGCAAATAAAGTGACAGAAAGTCTTGACAGGAATACTTCCTGTGCTGATCAATGCATGATGGAGACACTATTATTGGTGAGTGATGGCGATGATCAACTTAGTCTCATTTCATCATGTTTTGCATCTGATTCTGAAGCTTCCAAGAACAGTGTTCATTTTGATCCAGAAGATATTCATACTCCTGTAAGCCCTGTGGTGAATTCACACACTGAACCATGCAAGCCTGTCACATCATCTTTTAAGAACTCAAAAAGCAATTGCATCAAAAGAAAAAGAGTTGATATCCAAGATTATTCCATCTGTAGAAGTTCTTCTCAAAAGAAGCATAATCATCAGGCCAGGAGGCTTAATGGTGTTGATGAACCAAGTAAGCACAGAAACGACAATGATAGGTCACCCACCTCAGATACAGAGGACCCATATAACAGGAATTGCTCAGAGAATTTTCGTGGACAGAAGGACAGGCTGCGAGATTCTGGCGGTAGTAACAGAGAAGATAGTCCAGATTATAAAGAACCAAAGTTTTCCTGCCATTATGGTATTAGATATGATGATAACCATCATCGGAATCAAAGAGATAAGAGAAAATTTTCAAGTAGAAAAGGTAGTCACCGGTTCCAAGAGAAACTAGATCCATATGCGAAAAGAACTTTTAATGGAAGGCAGACTTTCTGTGAAGATAAGGATAGAGATTGGAGTCACTTTGGAAGAATGCAGTTCACTGAAGAGAGGAGTCCTCTCCCCAGCAGGGAGTCCAGGGGGTTGCATTCTAGGTGTTCCTCCACTGTTGAGGAAAGGGGTGCTCAATGGGGAAGGAATAGCAACAAACTGCTATTTAAGAAAATATCCAATTATAAGTGGCATGAAGACGATTTTCTGGGAGAAAAAGCTGGGAGATACGCATCATTCACTAGTCGAAAAAGGAATAATTTTGATGACTTTGATGAGAGGCGGTTGCCACCCGTCAGGAGAGAATTAAGTAACTGGGGTCGAAGGGGTGGATATGTGGACAGTCCCATTTATTTGGATGATTCACACTCTGAGCAATTTGAAGATGAATATTGCAAACACAGAGAAAATCGAGACTGCTCCCATCAGTCTTACAGAGACTTATATACAGCTGATGAAGGAAGCTGGAATCTCTCCATATCACCAAGAAATGAAGTTTCTTACCCAAGAACAAGTGATGAAAGATATTGGAGACGTGTGAGAAAAATAGATGCCGAAGAAGCCAATCAGATTAATTGGTTTGATGATCACCATGATGCTTATGAAATCGAAGATAACATGTATCGTAATGATCATTTAAGTTGGAGAAGATCTAACTGGCAATCTGAAGTTATGCACTGGACTGAAGACCAGTTTACTTTCAGACATCACGGTAATGAATTGTATTCTGAGAAAGCATCACGTTCTTATCAGAAATTTGTACGGCGTGAAAAATTTCATGCTAAATATGGTCCTCTGCATGATGGAATGCCTATTGATATTATACAGCCAGAGCAGCATGGATTGAAAATGGCCAGAAAAGGAGTTGGTGCTAACTTTATTAATAGAAGTGCTAAGATGCATAGAGTTAAGCATGAGCAGACGTTGAGGCGCAGGGATTCGATGGACTTGGCTGTTAGGGAACAAAAGGTAAAGTTGGGGAAACCAAGGGTGAAACCTTTCCTCACCCTACTTGTATATATCAGTGCTCCAATTCAGTTGAGCAAGCCTTATTTATTCAGGTCAATGATATTACATTGCATCTTTCCTGTTTTTGTTTTTGGTTTCTTATATCGTGTATTTGCTATTCCTTTGCCAAGTAATGTGTTTTATCACTTTTATGAGCCTTTAATGATTTCTAGTTTTTCGATTTGTCCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
Fip1

Protein Analysis

1054

Amino Acids

121.6

Weight (kDa)

5.75

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fip1 PF05182 190 - 232 3.5e-17 Fip1 motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1803, 2148
AccB7I CCANNNNNTGG 1 cut(s) 419
AccII CGCG 1 cut(s) 89
AciI CCGC 3 cut(s) 57, 1773, 2245
AclWI GGATC 6 cut(s) 409, 769, 826, 974, 1448, 1919
AcoI YGGCCR 1 cut(s) 2814
AcsI RAATTY 7 cut(s) 737, 946, 1492, 1735, 1880, 2717, 2735
AcuI CTGAAG 6 cut(s) 45, 633, 1446, 2037, 2649, 2667
AfaI GTAC 2 cut(s) 671, 2724
AfiI CCNNNNNNNGG 5 cut(s) 308, 419, 467, 1258, 2041
AflIII ACRYGT 2 cut(s) 2497, 2580
AgeI ACCGGT 1 cut(s) 1905
AhdI GACNNNNNGTC 1 cut(s) 1311
AhlI ACTAGT 1 cut(s) 2204
AjiI CACGTC 2 cut(s) 571, 2498
AjnI CCWGG 8 cut(s) 681, 724, 757, 783, 987, 1224, 1631, 2048
AluBI AGCT 8 cut(s) 606, 660, 700, 1063, 1430, 2183, 2414, 2427
AluI AGCT 8 cut(s) 606, 660, 700, 1063, 1430, 2183, 2414, 2427
Alw21I GWGCWC 2 cut(s) 2098, 2992
Alw26I GTCTC 9 cut(s) 21, 172, 465, 1037, 1349, 1400, 2370, 2394, 2488
AlwI GGATC 6 cut(s) 409, 769, 826, 974, 1448, 1919
AoxI GGCC 5 cut(s) 54, 1035, 1281, 1629, 2814
ApaI GGGCCC 1 cut(s) 1039
ApeKI GCWGC 3 cut(s) 697, 1759, 2797
ApoI RAATTY 7 cut(s) 737, 946, 1492, 1735, 1880, 2717, 2735
ArsI GACNNNNNNTTYG 1 cut(s) 37
AseI ATTAAT 2 cut(s) 2535, 2844
AsiGI ACCGGT 1 cut(s) 1905
Asp700I GAANNNNTTC 6 cut(s) 690, 1464, 1603, 1882, 2736, 2960
AspLEI GCGC 3 cut(s) 52, 91, 2895
AspS9I GGNCC 5 cut(s) 558, 1035, 1036, 1708, 2753
AsuII TTCGAA 1 cut(s) 523
AvaII GGWCC 3 cut(s) 558, 1708, 2753
BaeGI GKGCMC 2 cut(s) 369, 1039
BalI TGGCCA 1 cut(s) 2816
BanII GRGCYC 1 cut(s) 1039
BarI GAAGNNNNNNTAC 2 cut(s) 1588, 1620
BbsI GAAGAC 3 cut(s) 117, 2166, 2655
Bbv12I GWGCWC 2 cut(s) 2098, 2992
BbvI GCAGC 3 cut(s) 709, 1746, 2809
BceAI ACGGC 3 cut(s) 88, 169, 2741
BcgI CGANNNNNNTGC 4 cut(s) 145, 179, 470, 504
BciT130I CCWGG 8 cut(s) 683, 726, 759, 785, 989, 1226, 1633, 2050
BclI TGATCA 5 cut(s) 1213, 1339, 1384, 2548, 2593
BcoDI GTCTC 9 cut(s) 21, 172, 465, 1037, 1349, 1400, 2370, 2394, 2488
BcuI ACTAGT 1 cut(s) 2204
BfaI CTAG 4 cut(s) 1922, 2064, 2205, 3141
BfmI CTRYAG 1 cut(s) 1594
BglII AGATCT 1 cut(s) 2612
BisI GCNGC 4 cut(s) 57, 698, 1760, 2798
BlsI GCNGC 4 cut(s) 58, 699, 1761, 2799
BmcAI AGTACT 1 cut(s) 671
Bme1390I CCNGG 8 cut(s) 683, 726, 759, 785, 989, 1226, 1633, 2050
Bme18I GGWCC 3 cut(s) 558, 1708, 2753
BmeRI GACNNNNNGTC 1 cut(s) 1311
BmgBI CACGTC 2 cut(s) 571, 2498
BmgT120I GGNCC 5 cut(s) 558, 1035, 1036, 1708, 2753
BmiI GGNNCC 3 cut(s) 1037, 1710, 1910
BmrFI CCNGG 8 cut(s) 683, 726, 759, 785, 989, 1226, 1633, 2050
BmrI ACTGGG 1 cut(s) 2287
BmuI ACTGGG 1 cut(s) 2287
BpiI GAAGAC 3 cut(s) 117, 2166, 2655
BplI GAGNNNNNCTC 2 cut(s) 2014, 2046
Bpu14I TTCGAA 1 cut(s) 523
BpuEI CTTGAG 1 cut(s) 381
BsaBI GATNNNNATC 2 cut(s) 1851, 2194
BsaI GGTCTC 1 cut(s) 465
BsaJI CCNNGG 6 cut(s) 548, 681, 783, 987, 2049, 2948
BsaWI WCCGGW 2 cut(s) 301, 1905
BsaXI ACNNNNNCTCC 4 cut(s) 662, 692, 817, 847
Bsc4I CCNNNNNNNGG 5 cut(s) 308, 419, 467, 1258, 2041
Bse118I RCCGGY 1 cut(s) 1905
Bse1I ACTGG 6 cut(s) 512, 570, 2282, 2624, 2645, 2653
Bse3DI GCAATG 2 cut(s) 424, 3037
Bse8I GATNNNNATC 2 cut(s) 1851, 2194
BseBI CCWGG 8 cut(s) 683, 726, 759, 785, 989, 1226, 1633, 2050
BseDI CCNNGG 6 cut(s) 548, 681, 783, 987, 2049, 2948
BseGI GGATG 6 cut(s) 232, 256, 355, 931, 1184, 2326
BseJI GATNNNNATC 2 cut(s) 1851, 2194
BseLI CCNNNNNNNGG 5 cut(s) 308, 419, 467, 1258, 2041
BseMI GCAATG 2 cut(s) 424, 3037
BseMII CTCAG 5 cut(s) 756, 1710, 1743, 2325, 2682
BseNI ACTGG 6 cut(s) 512, 570, 2282, 2624, 2645, 2653
BseRI GAGGAG 4 cut(s) 483, 605, 825, 2038
BseSI GKGCMC 2 cut(s) 369, 1039
BseXI GCAGC 3 cut(s) 709, 1746, 2809
BseYI CCCAGC 2 cut(s) 2036, 2183
Bsh1236I CGCG 1 cut(s) 89
Bsh1285I CGRYCG 1 cut(s) 1110
BshFI GGCC 5 cut(s) 56, 1037, 1283, 1631, 2816
BshTI ACCGGT 1 cut(s) 1905
BsiEI CGRYCG 1 cut(s) 1110
BsiHKAI GWGCWC 2 cut(s) 2098, 2992
BsiSI CCGG 2 cut(s) 302, 1906
BslFI GGGAC 1 cut(s) 2292
BslI CCNNNNNNNGG 5 cut(s) 308, 419, 467, 1258, 2041
BsmAI GTCTC 9 cut(s) 21, 172, 465, 1037, 1349, 1400, 2370, 2394, 2488
BsmBI CGTCTC 2 cut(s) 172, 2488
BsmFI GGGAC 1 cut(s) 2292
BsmI GAATGC 3 cut(s) 2010, 2059, 2775
BsnI GGCC 5 cut(s) 56, 1037, 1283, 1631, 2816
Bso31I GGTCTC 1 cut(s) 465
Bsp119I TTCGAA 1 cut(s) 523
Bsp120I GGGCCC 1 cut(s) 1035
Bsp1286I GDGCHC 4 cut(s) 369, 1039, 2098, 2992
BspACI CCGC 3 cut(s) 57, 1773, 2245
BspANI GGCC 5 cut(s) 56, 1037, 1283, 1631, 2816
BspCNI CTCAG 5 cut(s) 757, 1709, 1742, 2326, 2683
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 3 cut(s) 1037, 1710, 1910
BspPI GGATC 6 cut(s) 409, 769, 826, 974, 1448, 1919
BspQI GCTCTTC 1 cut(s) 736
BspT104I TTCGAA 1 cut(s) 523
BspTNI GGTCTC 1 cut(s) 465
BsrDI GCAATG 2 cut(s) 424, 3037
BsrFI RCCGGY 1 cut(s) 1905
BsrI ACTGG 6 cut(s) 512, 570, 2282, 2624, 2645, 2653
BssAI RCCGGY 1 cut(s) 1905
BssECI CCNNGG 6 cut(s) 548, 681, 783, 987, 2049, 2948
BssT1I CCWWGG 2 cut(s) 548, 2948
Bst2UI CCWGG 8 cut(s) 683, 726, 759, 785, 989, 1226, 1633, 2050
Bst4CI ACNGT 9 cut(s) 239, 245, 462, 714, 1220, 1442, 2080, 2306, 2675
Bst6I CTCTTC 2 cut(s) 736, 2013
BstBI TTCGAA 1 cut(s) 523
BstC8I GCNNGC 4 cut(s) 54, 722, 1514, 3008
BstDEI CTNAG 8 cut(s) 177, 765, 1391, 1696, 1729, 2334, 2691, 2856
BstEII GGTNACC 2 cut(s) 1220, 1686
BstF5I GGATG 6 cut(s) 232, 256, 355, 931, 1184, 2326
BstFNI CGCG 1 cut(s) 89
BstHHI GCGC 3 cut(s) 52, 91, 2895
BstMAI GTCTC 9 cut(s) 21, 172, 465, 1037, 1349, 1400, 2370, 2394, 2488
BstMCI CGRYCG 1 cut(s) 1110
BstMWI GCNNNNNNNGC 5 cut(s) 56, 62, 726, 2522, 2797
BstNI CCWGG 8 cut(s) 683, 726, 759, 785, 989, 1226, 1633, 2050
BstNSI RCATGY 2 cut(s) 724, 2584
BstPI GGTNACC 2 cut(s) 1220, 1686
BstSCI CCNGG 8 cut(s) 681, 724, 757, 783, 987, 1224, 1631, 2048
BstSFI CTRYAG 1 cut(s) 1594
BstSLI GKGCMC 2 cut(s) 369, 1039
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 3 cut(s) 709, 1746, 2809
BstV2I GAAGAC 3 cut(s) 117, 2166, 2655
BstX2I RGATCY 4 cut(s) 401, 761, 1924, 2612
BstXI CCANNNNNNTGG 3 cut(s) 942, 1232, 2317
BstYI RGATCY 4 cut(s) 401, 761, 1924, 2612
BsuRI GGCC 5 cut(s) 56, 1037, 1283, 1631, 2816
BtgZI GCGATG 1 cut(s) 1395
BtrI CACGTC 2 cut(s) 571, 2498
BtsCI GGATG 6 cut(s) 232, 256, 355, 931, 1184, 2326
Cac8I GCNNGC 4 cut(s) 54, 722, 1514, 3008
CfoI GCGC 3 cut(s) 52, 91, 2895
Cfr10I RCCGGY 1 cut(s) 1905
Cfr13I GGNCC 5 cut(s) 558, 1035, 1036, 1708, 2753
CsiI ACCWGGT 1 cut(s) 1224
Csp6I GTAC 2 cut(s) 670, 2723
CspAI ACCGGT 1 cut(s) 1905
CviQI GTAC 2 cut(s) 670, 2723
DdeI CTNAG 8 cut(s) 177, 765, 1391, 1696, 1729, 2334, 2691, 2856
DriI GACNNNNNGTC 1 cut(s) 1311
EaeI YGGCCR 1 cut(s) 2814
Eam1104I CTCTTC 2 cut(s) 736, 2013
Eam1105I GACNNNNNGTC 1 cut(s) 1311
EarI CTCTTC 2 cut(s) 736, 2013
Eco130I CCWWGG 2 cut(s) 548, 2948
Eco24I GRGCYC 1 cut(s) 1039
Eco31I GGTCTC 1 cut(s) 465
Eco32I GATATC 1 cut(s) 1576
Eco47I GGWCC 3 cut(s) 558, 1708, 2753
Eco57I CTGAAG 6 cut(s) 45, 633, 1446, 2037, 2649, 2667
Eco91I GGTNACC 2 cut(s) 1220, 1686
EcoO109I RGGNCCY 2 cut(s) 1035, 1708
EcoO65I GGTNACC 2 cut(s) 1220, 1686
EcoRI GAATTC 2 cut(s) 946, 1492
EcoRII CCWGG 8 cut(s) 681, 724, 757, 783, 987, 1224, 1631, 2048
EcoRV GATATC 1 cut(s) 1576
EcoT14I CCWWGG 2 cut(s) 548, 2948
EcoT22I ATGCAT 2 cut(s) 1349, 2865
EcoT38I GRGCYC 1 cut(s) 1039
ErhI CCWWGG 2 cut(s) 548, 2948
Esp3I CGTCTC 2 cut(s) 172, 2488
FalI AAGNNNNNCTT 2 cut(s) 1945, 1977
FaqI GGGAC 1 cut(s) 2292
FauNDI CATATG 2 cut(s) 829, 1930
FbaI TGATCA 5 cut(s) 1213, 1339, 1384, 2548, 2593
Fnu4HI GCNGC 4 cut(s) 57, 698, 1760, 2798
FokI GGATG 6 cut(s) 239, 263, 362, 918, 1171, 2333
FriOI GRGCYC 1 cut(s) 1039
Fsp4HI GCNGC 4 cut(s) 57, 698, 1760, 2798
FspBI CTAG 4 cut(s) 1922, 2064, 2205, 3141
GlaI GCGC 3 cut(s) 51, 90, 2894
GluI GCNGC 4 cut(s) 57, 698, 1760, 2798
GsaI CCCAGC 2 cut(s) 2040, 2187
HaeIII GGCC 5 cut(s) 56, 1037, 1283, 1631, 2816
HapII CCGG 2 cut(s) 302, 1906
HhaI GCGC 3 cut(s) 52, 91, 2895
Hin6I GCGC 3 cut(s) 50, 89, 2893
HinP1I GCGC 3 cut(s) 50, 89, 2893
HindIII AAGCTT 1 cut(s) 1428
HpaII CCGG 2 cut(s) 302, 1906
Hpy166II GTNNAC 4 cut(s) 1745, 2013, 2302, 2658
Hpy188III TCNNGA 8 cut(s) 497, 611, 1136, 1316, 1457, 1796, 2260, 2375
Hpy8I GTNNAC 4 cut(s) 1745, 2013, 2302, 2658
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 5 cut(s) 1744, 1947, 2100, 2280, 2414
HpyCH4III ACNGT 9 cut(s) 239, 245, 462, 714, 1220, 1442, 2080, 2306, 2675
HpyCH4IV ACGT 4 cut(s) 570, 2497, 2704, 2885
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 62, 726, 2522, 2797
HpyF3I CTNAG 8 cut(s) 177, 765, 1391, 1696, 1729, 2334, 2691, 2856
HpySE526I ACGT 4 cut(s) 570, 2497, 2704, 2885
HspAI GCGC 3 cut(s) 50, 89, 2893
Ksp22I TGATCA 5 cut(s) 1213, 1339, 1384, 2548, 2593
LguI GCTCTTC 1 cut(s) 736
LmnI GCTCC 6 cut(s) 318, 603, 838, 1060, 2387, 2995
Lsp1109I GCAGC 3 cut(s) 709, 1746, 2809
MabI ACCWGGT 1 cut(s) 1224
MaeI CTAG 4 cut(s) 1922, 2064, 2205, 3141
MaeII ACGT 4 cut(s) 570, 2497, 2704, 2885
MfeI CAATTG 1 cut(s) 1549
MflI RGATCY 4 cut(s) 401, 761, 1924, 2612
MhlI GDGCHC 4 cut(s) 369, 1039, 2098, 2992
MlsI TGGCCA 1 cut(s) 2816
MluNI TGGCCA 1 cut(s) 2816
MlyI GAGTC 7 cut(s) 230, 388, 443, 1199, 1999, 2035, 2054
MmeI TCCRAC 3 cut(s) 204, 923, 2585
Mox20I TGGCCA 1 cut(s) 2816
Mph1103I ATGCAT 2 cut(s) 1349, 2865
MroXI GAANNNNTTC 6 cut(s) 690, 1464, 1603, 1882, 2736, 2960
MscI TGGCCA 1 cut(s) 2816
MslI CAYNNNNRTG 4 cut(s) 1005, 2556, 2676, 3120
Msp20I TGGCCA 1 cut(s) 2816
MspA1I CMGCKG 3 cut(s) 660, 700, 2414
MspI CCGG 2 cut(s) 302, 1906
MspR9I CCNGG 8 cut(s) 683, 726, 759, 785, 989, 1226, 1633, 2050
MunI CAATTG 1 cut(s) 1549
Mva1269I GAATGC 3 cut(s) 2010, 2059, 2775
MvaI CCWGG 8 cut(s) 683, 726, 759, 785, 989, 1226, 1633, 2050
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 5 cut(s) 56, 62, 726, 2522, 2797
NdeI CATATG 2 cut(s) 829, 1930
NlaIV GGNNCC 3 cut(s) 1037, 1710, 1910
NmuCI GTSAC 6 cut(s) 239, 1303, 1519, 1686, 1901, 1991
NsiI ATGCAT 2 cut(s) 1349, 2865
NspI RCATGY 2 cut(s) 724, 2584
NspV TTCGAA 1 cut(s) 523
PaeI GCATGC 1 cut(s) 724
PciI ACATGT 1 cut(s) 2580
PciSI GCTCTTC 1 cut(s) 736
PcsI WCGNNNNNNNCGW 1 cut(s) 458
PctI GAATGC 3 cut(s) 2010, 2059, 2775
PdmI GAANNNNTTC 6 cut(s) 690, 1464, 1603, 1882, 2736, 2960
PflMI CCANNNNNTGG 1 cut(s) 419
PinAI ACCGGT 1 cut(s) 1905
PkrI GCNGC 4 cut(s) 58, 699, 1761, 2799
PleI GAGTC 7 cut(s) 229, 388, 442, 1199, 1998, 2034, 2053
PpsI GAGTC 7 cut(s) 229, 388, 442, 1199, 1998, 2034, 2053
PpuMI RGGWCCY 1 cut(s) 1708
PscI ACATGT 1 cut(s) 2580
PshBI ATTAAT 2 cut(s) 2535, 2844
PsiI TTATAA 2 cut(s) 1803, 2148
Psp5II RGGWCCY 1 cut(s) 1708
Psp6I CCWGG 8 cut(s) 681, 724, 757, 783, 987, 1224, 1631, 2048
PspEI GGTNACC 2 cut(s) 1220, 1686
PspFI CCCAGC 2 cut(s) 2036, 2183
PspGI CCWGG 8 cut(s) 681, 724, 757, 783, 987, 1224, 1631, 2048
PspN4I GGNNCC 3 cut(s) 1037, 1710, 1910
PspOMI GGGCCC 1 cut(s) 1035
PspPI GGNCC 5 cut(s) 558, 1035, 1036, 1708, 2753
PspPPI RGGWCCY 1 cut(s) 1708
PsuI RGATCY 4 cut(s) 401, 761, 1924, 2612
PvuII CAGCTG 3 cut(s) 660, 700, 2414
RsaI GTAC 2 cut(s) 671, 2724
RsaNI GTAC 2 cut(s) 670, 2723
RseI CAYNNNNRTG 4 cut(s) 1005, 2556, 2676, 3120
SapI GCTCTTC 1 cut(s) 736
SatI GCNGC 4 cut(s) 57, 698, 1760, 2798
Sau96I GGNCC 5 cut(s) 558, 1035, 1036, 1708, 2753
ScaI AGTACT 1 cut(s) 671
SchI GAGTC 7 cut(s) 230, 388, 443, 1199, 1999, 2035, 2054
ScrFI CCNGG 8 cut(s) 683, 726, 759, 785, 989, 1226, 1633, 2050
SduI GDGCHC 4 cut(s) 369, 1039, 2098, 2992
SexAI ACCWGGT 1 cut(s) 1224
SfcI CTRYAG 1 cut(s) 1594
SfuI TTCGAA 1 cut(s) 523
SinI GGWCC 3 cut(s) 558, 1708, 2753
SmiMI CAYNNNNRTG 4 cut(s) 1005, 2556, 2676, 3120
SmlI CTYRAG 1 cut(s) 396
SmoI CTYRAG 1 cut(s) 396
SpeI ACTAGT 1 cut(s) 2204
SphI GCATGC 1 cut(s) 724
SsiI CCGC 3 cut(s) 57, 1773, 2245
SspI AATATT 1 cut(s) 2354
SspMI CTAG 4 cut(s) 1922, 2064, 2205, 3141
StyD4I CCNGG 8 cut(s) 681, 724, 757, 783, 987, 1224, 1631, 2048
StyI CCWWGG 2 cut(s) 548, 2948
TaaI ACNGT 9 cut(s) 239, 245, 462, 714, 1220, 1442, 2080, 2306, 2675
TaiI ACGT 4 cut(s) 573, 2500, 2707, 2888
TaqI TCGA 9 cut(s) 45, 523, 541, 2209, 2284, 2374, 2571, 2903, 3149
TaqII GACCGA 1 cut(s) 1124
TatI WGTACW 1 cut(s) 669
TauI GCSGC 1 cut(s) 59
TseFI GTSAC 6 cut(s) 239, 1303, 1519, 1686, 1901, 1991
TseI GCWGC 3 cut(s) 697, 1759, 2797
Tsp45I GTSAC 6 cut(s) 239, 1303, 1519, 1686, 1901, 1991
TspGWI ACGGA 1 cut(s) 828
Van91I CCANNNNNTGG 1 cut(s) 419
VpaK11BI GGWCC 3 cut(s) 558, 1708, 2753
VspI ATTAAT 2 cut(s) 2535, 2844
XapI RAATTY 7 cut(s) 737, 946, 1492, 1735, 1880, 2717, 2735
XceI RCATGY 2 cut(s) 724, 2584
XcmI CCANNNNNNNNNTGG 3 cut(s) 193, 436, 568
XmnI GAANNNNTTC 6 cut(s) 690, 1464, 1603, 1882, 2736, 2960
XspI CTAG 4 cut(s) 1922, 2064, 2205, 3141
ZrmI AGTACT 1 cut(s) 671
Zsp2I ATGCAT 2 cut(s) 1349, 2865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.