Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004701

Physical Location & Seq

Genomic Coordinates Forward (+)

34996492 .. 35002451

Gene Structure 5960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0201400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTGCACGTGGATGCTAGGTTCGTGGTCGGTGTGGTTGGAAATATCATCTCTGGCGGGCTTTTTCTCTCTCCAATACCTACATTCATACAAATATGGAGAAAAAAAGATGTGGAAGCTTTCGATCCAAAACCTTACCTTGCAACAGTGTTGAACTGTTTGTTATGGTGTTACTATGGATTGCCATTTATTAATCCAAACAGCATTTTAGTTGTCACCATTAATGGAATTGGGCTACTTATAGAGCTTATATATCTGGGCATATTCTTCTATTATGCTTCAGCAAAAGGACGAAAGAGGGTTGCTACATACTTTGTATGTGAACTGGTTTTCTTTGGGGCTGTTGTGGCTGCAACTATGTTGGCAATACCCGAGCATAAGATGAAGATGAATCGACATTTGAGGGCTGTTGTAGTTGGTATTATCTGTGACTTTTTCAATGTCCTCATGTATAGCTCTCCTCTATTCATCTTGAGAGATGTCTATAAAACAAAGAGTGTGCAATACATGCCATTCTCACTCTCGGTTGCTAACTTTCTGAATGGTTGTTGCTGGACTTCCTATGCTCTTATTGGAAAAGTGGACTACTTTATTTTGGTTAGCAATGGTCTCGGTGCAATCGCTGGAGTAATTCAATTGATAGTTTATGCAATATACTACAAACCTACACCAAAAAATGAAGACCCCGCTGACAAGGCTACTAATGAAGTGCAACTCGCAACTATTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Fip1

Protein Analysis

243

Amino Acids

27.14

Weight (kDa)

8.94

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	9 - 96	2e-21	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	138 - 221	6.9e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66652 AT3G66652 AT3G66652
fragaria_vesca	FvH4_4g19650 FvH4_4g19650 FvH4_4g19650 FvH4_4g19650 FvH4_4g19650 FvH4_4g19650
malus_domestica	MD13G1154900.v1.1 MD16G1154500.v1.1
prunus_persica	Prupe.1G117900_v2.0.a1
pyrus_communis	pycom13g13170 pycom16g13090
rosa_chinensis	RchiOBHm_Chr4g0425101
rosa_laevigata	RLG00000007403 RLG00000007404 RLG00000007405 RLG00000007407
rosa_multiflora	Rmu_ssc0000420.1_g000015 Rmu_ssc0000420.1_g000026
rosa_roxburghii	Rroxscaffold_5G00367170
rosa_rugosa	Rorug04G0200900 Rorug04G0201400 Rorug04G0201400 Rorug04G0201500
rosa_samantha	Rh4AG258200 Rh4BG263800 Rh4CG274900 Rh4DG259700
rosa_wichuraiana	Rw4G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	57, 687
AclWI	GGATC	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	264
AcvI	CACGTG	1 cut(s)	10
AgsI	TTSAA	3 cut(s)	154, 439, 635
AloI	GAACNNNNNNTCC	1 cut(s)	37
AluBI	AGCT	3 cut(s)	119, 247, 456
AluI	AGCT	3 cut(s)	119, 247, 456
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	614
Alw44I	GTGCAC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	371
ApaLI	GTGCAC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	350
AseI	ATTAAT	2 cut(s)	192, 222
AsuHPI	GGTGA	1 cut(s)	208
AvaI	CYCGRG	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	9
BbrPI	CACGTG	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	337
BcgI	CGANNNNNNTGC	2 cut(s)	592, 626
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	1 cut(s)	18
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	687
BpmI	CTGGAG	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	493
BsaAI	YACGTR	1 cut(s)	10
BsaI	GGTCTC	1 cut(s)	614
Bse1I	ACTGG	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	610
BseGI	GGATG	1 cut(s)	19
BseMI	GCAATG	1 cut(s)	610
BseNI	ACTGG	1 cut(s)	330
BseRI	GAGGAG	1 cut(s)	450
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	371
BsmAI	GTCTC	1 cut(s)	614
Bso31I	GGTCTC	1 cut(s)	614
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	2 cut(s)	57, 687
BspPI	GGATC	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	614
BsrDI	GCAATG	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	330
BssMI	GATC	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	148, 158
BstAPI	GCANNNNNTGC	1 cut(s)	508
BstBAI	YACGTR	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 508, 695
BstNSI	RCATGY	1 cut(s)	511
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	1 cut(s)	687
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	59
CviAII	CATG	2 cut(s)	448, 508
CviJI	RGCY	9 cut(s)	61, 119, 235, 247, 341, 350, 407, 456, 698
CviKI_1	RGCY	9 cut(s)	61, 119, 235, 247, 341, 350, 407, 456, 698
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eco31I	GGTCTC	1 cut(s)	614
Eco57I	CTGAAG	1 cut(s)	264
Eco72I	CACGTG	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	371
FaeI	CATG	2 cut(s)	451, 511
FatI	CATG	2 cut(s)	447, 507
FauI	CCCGC	2 cut(s)	50, 694
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	645
Hin1II	CATG	2 cut(s)	451, 511
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	1 cut(s)	391
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	3 cut(s)	7, 323, 583
Hpy188I	TCNGA	1 cut(s)	540
Hpy188III	TCNNGA	1 cut(s)	472
Hpy8I	GTNNAC	3 cut(s)	7, 323, 583
HpyCH4III	ACNGT	2 cut(s)	148, 158
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	7 cut(s)	7, 143, 353, 502, 617, 650, 712
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 508, 695
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	2 cut(s)	451, 511
Kzo9I	GATC	1 cut(s)	124
LpnPI	CCDG	5 cut(s)	39, 242, 311, 538, 609
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	3 cut(s)	170, 214, 428
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	3 cut(s)	259, 397, 692
MfeI	CAATTG	1 cut(s)	635
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	3 cut(s)	228, 630, 635
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	4 cut(s)	291, 396, 455, 471
MseI	TTAA	2 cut(s)	192, 222
MslI	CAYNNNNRTG	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	689
MunI	CAATTG	1 cut(s)	635
MwoI	GCNNNNNNNGC	3 cut(s)	347, 508, 695
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	451, 511
NmuCI	GTSAC	2 cut(s)	214, 428
NspI	RCATGY	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	352
PmaCI	CACGTG	1 cut(s)	10
PmlI	CACGTG	1 cut(s)	10
Ppu21I	YACGTR	1 cut(s)	10
PshBI	ATTAAT	2 cut(s)	192, 222
PspCI	CACGTG	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	192, 222
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	9 cut(s)	12, 23, 82, 121, 136, 141, 249, 458, 667
SfaNI	GCATC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	472
SmoI	CTYRAG	1 cut(s)	472
Sse9I	AATT	3 cut(s)	228, 630, 635
SsiI	CCGC	2 cut(s)	57, 687
SspMI	CTAG	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	148, 158
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	2 cut(s)	123, 394
TasI	AATT	3 cut(s)	228, 630, 635
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	2 cut(s)	192, 222
Tru9I	TTAA	2 cut(s)	192, 222
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	2 cut(s)	214, 428
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	2 cut(s)	214, 428
TspDTI	ATGAA	6 cut(s)	76, 398, 404, 457, 693, 720
TspRI	CASTG	1 cut(s)	153
VneI	GTGCAC	1 cut(s)	5
VspI	ATTAAT	2 cut(s)	192, 222
XceI	RCATGY	1 cut(s)	511
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.