Rroxscaffold_5G00367170

Fip1 motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004701
Physical Location & Seq
Forward (+)
49049861 .. 49056476
6616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00367170.1

Sequence Viewer

Length: 3549 bp
ATGGCAGATTTGGACGACGATTTCGGAGACATCTACACTGATGTCGAAGTGCAGGCCGCTTCAGCCATCAATGGCGTATCGGACTTCGCTCAGTTCTATACAGAACCCAAAGAAGATAGAAATAATAGTAATAACATTGCAAAGAACGGCGACACTTGCTCCGGCGAGGGTTTCGTCTCCGATTCTGAGAAACCCAAAGAGGAATTGGGTGGTAAAGTTTCGGGTTCGGAGTCGGATGACACTGACAGTGAGGATGACCTGAATATAGTTTTGAACGATGGGGGCTGTAAAGGTATTCCCTTTCCGGTTTCAGGTGGAGGGGGCATGAGGGTTGATGATTATGAAGATGAGGATGATGATGCTCTTGTGCCCATGAAAGATTGCAAGTATGTATGGACTCAAGGATTTACTTGTCCAAGCAATGGAAAAGCCAATGAGTCTTTGGAGTTGGTGTCGCCTATGCCGTTTGGAGGAGACCACTCGCAGAGTAGTCGTGTTCGTGATACACCTAATCCAGTGGTGATTCGAAATAGATATGGTTTTCGACTTCCTTGGTATAGGACCATACTGGACGTGGATATTGAATCATTTGAGGAGAAGTCATGGAGGTATCCTGGAGTTGATATAACAGATTACTTCAATTTTGATTTGAATGAGGACAGCTGGAAAGAGTACTGCAACTCCCTGGAACAACTTCGGCAGCTAAAATCCACACAGTATGGCATGCCTGGCTCTTCAAAAATTTATCAGGCTAAAGAAGCTGGATCTGAGTATGGCAGATTCACCCAGGAAACTATGCCTAAAGAAATGAATTATGCTGGATCATGGACATATGCCCCTCCGTCATCAACAGTTTCTGATTGCAGACCAAAAGGGAAAGCAATTCAGATAGAAGATAGTGTTTTTGAACGCCAACCATCTTTTGATAGCAGGCATCCACGAAGTTGGAATTCTGATGTTGTGATACAGATTTCTGTGCATGATCCCACCCAGGAAACCTCCCATTCTGGTGAGGAACATGGGCATACAAATAGCAGGGCCCGTGAGACATCTGAAAATGGGGAGCTTGATGCAAATGGAAACCAAAACAATATCTCATATAATACTACGACCGATGATGATTCATCATTAGGAAGTCCAAAAGCAAACACAAGAAAATTAGACAGATGTTCCCAGAAGATCAGTGCATCCCATCCAATGACAATAGACTCCGATGATCACAGTAACCAGGTCATTGGTGTTGATGGGGATAACCATAAGGAGGTGAATGGTATCTCATTGGAGGCCATTGAAAGTGCAAATAAAGTGACAGAAAGTCTTGACAGGAGTACTTCCTGTGCTGATCAATGCATGATGGAGACATTATTATTGCTGAGTGATGACGATGATCAACTTAGTCTCATTTCATCATGTTTTGCATCTGATTCTGAAGCTTCCAAGAACAGTGTTCATTTTGATCCAGAAGATATTCATACTCCTGTAAGCCCTGTGGTGAATTCACATACTGAACCACGCAAGCCTGTCACATCATCTTTTAAGAACTCAAAAAGCAACTGCATCAAAAGAAAAAGAGTTGATATCCAAGATTATTCTATCTGTAGAAGTTCTTCTCAAAAGAAGCATAATCATCAGGCCAGGAGGCTTAACGGTGTTGATGAACCAAGTAAGCACAGAAACAACGACAATGATAGGTCACCCACCTCAGATACAGAGGACCCATATAACATGAATTGCTCAGAGAATTTTCGTGGACAGAAGGACAGGCTGCGAGATTCTGGCGGTAGTAACAGAGAAGATAGTCTAGATTATAAAGAACCAAAGTTTTCCTGCCATTATGGTATTAGATATGATGATAACCATCATCGGAATCAAAGAGATAAGAGAAATTTTTCAAGTAGAAAAGGTAGTCACCTGTTCCAAGAGAAACTAGATCCATATGCGAACAGAACTATTACTGAAAGGCAGACTTTCTGTGAAGATAAGGATAGAGATTGGAGTCACTTTGGAAGAACGCAGTTCACTGAGGAGAGGAGTCCTCTCCCCAGCAGGGCGTCCAGGGGGTTGCATTCTAGGTGTTCCTCCACTGTTGAGGAAAGGGGTGCTCAATGGGGAAGGAATAGCAACAAACTGCTATTTAAGAAAATATCCAATTATAAGTGGCATGAAGACGATTTTCTGGGAGAAAAAGCTGGGAGATACGCATCATTCACTAGTCGAAAAAGGAATAATTTTGATGACTTTGATGAGAGGCAGTTGCCACCTGTCAGGAGAGAATTAAGTAACTGGGGGCGAAGGGTTGGATATGTGGACAGTCCCATTTATTTGGATGATTCACACTCTGAGCAATTTGAAGATGAATATTGCAAACACAGAGAAAATCGAGACTGCTCCCATCAGTCTTACAGAGACTTATATACAGCTGATGAAGGAAGCTGGAATCTCTCCATATCACGAAGAAATGATGTTTCTTACCGAAGAACAAGTGATGAAAGATATTGGAGACGTGTGAGAAAAATAGATGCCGAAGAAGCCAATCAGATTAATTGGTTTGATGATCACTATGATGCTTATGAAATCGAAGATAACATGTATCGTAATGATCATTTAAGGTGGAGAAGATCTAACTGGCGATCTGAAGTTATGCAATGGACTGAAGACCAGTTTACTTTCAGACATCATGATGATGAATTGTATTCTGAGAAAGCATCACGTTCTTATCAGAAATTTGTACGGCGAGAAAAATTTCATGCTAAAAATGGTCCTCTGCGTGATGGAATGCCTATTGATATTATGCAGCCAGAGCAGCATGGATTGAAAATGCCCAGGAAAGGAGTCGGTGCTAACTTTATTAATAGAAGTGCTAAGATGCATAGAGTTAAGCATGAGCAGATGTTGAGGCGCAGGGATTCGATGGACTTGGCTGTTAGGGAACAAAAGATCTCTGCAAGATGCTCCAAAGCCAGATTTTCGATATGCAATGGTAGGCCAGAAAGTATGGGTGCAGAGATTAGTGGAGAGGGGATAACCTCAGGGAAATCGCAGTCGTGTGAATCTGAGAAGGCGAGGGCAGTAGAAATCACCCAAAAATTTGCATGGGACCGAAACAACGAGAAAGGGCATCATATGTTTCCAGTTACAAATCAAAATGCTGATTTGGATATAGAGGAGGGCCAGATTGTAATACAAGAACAGAATACAGCAAATCCTTTGCAGAGAAAACATGCTTATGATCACACAGCACCAGCCCACAGCGTGAAAAAGAGAATGTTTGATTGTCATAATGCTTCCAATGGGAATCAGGTTGTAGAAGGATATGACAAACAAAAGATTCTTCAGACAATGGCTAAAATGGAGCAACGTGAGGAGCGCTTTAAGGAGCCGATCACCTTAAAAAAGGAGCCAGACAAGTTGTTCAAGCCTGAGGTTGATCCCACAGTTCAAGCGGCTGAAGAAAAGCAACATAGGCCAGCCCGAAAGAGGCAGTGGGGTGGTAGGTTCTCAAAGAATGACTCTCTAATGTTGGGAATTCCATTGAAAGCAAGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
Fip1

Protein Analysis

1182

Amino Acids

136.05

Weight (kDa)

5.82

Isoelectric Point (pI)

51.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fip1 PF05182 191 - 233 9.9e-20 Fip1 motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1809, 2154
AccB7I CCANNNNNTGG 1 cut(s) 422
AciI CCGC 3 cut(s) 57, 1779, 3443
AclWI GGATC 6 cut(s) 772, 829, 977, 1451, 1925, 3422
AcsI RAATTY 9 cut(s) 741, 949, 1495, 1741, 1885, 2723, 2741, 3086, 3525
AcuI CTGAAG 6 cut(s) 45, 1449, 2655, 2673, 3317, 3468
AcyI GRCGYC 1 cut(s) 2051
AdeI CACNNNGTG 1 cut(s) 3253
AfaI GTAC 3 cut(s) 674, 1330, 2730
AfeI AGCGCT 1 cut(s) 3368
AfiI CCNNNNNNNGG 7 cut(s) 311, 422, 470, 1261, 2047, 2828, 3477
AflIII ACRYGT 2 cut(s) 2503, 2586
AhdI GACNNNNNGTC 1 cut(s) 1314
AhlI ACTAGT 1 cut(s) 2210
AjiI CACGTC 2 cut(s) 574, 2504
AjnI CCWGG 9 cut(s) 613, 684, 727, 786, 990, 1227, 1634, 2054, 2822
AluBI AGCT 8 cut(s) 663, 703, 761, 1066, 1433, 2189, 2420, 2433
AluI AGCT 8 cut(s) 663, 703, 761, 1066, 1433, 2189, 2420, 2433
Alw21I GWGCWC 1 cut(s) 2104
Alw26I GTCTC 9 cut(s) 21, 181, 468, 1040, 1352, 1403, 2376, 2400, 2494
AlwI GGATC 6 cut(s) 772, 829, 977, 1451, 1925, 3422
AlwNI CAGNNNCTG 1 cut(s) 857
Aor51HI AGCGCT 1 cut(s) 3368
AoxI GGCC 7 cut(s) 54, 1038, 1284, 1632, 2984, 3169, 3464
ApaI GGGCCC 1 cut(s) 1042
ApeKI GCWGC 4 cut(s) 700, 1765, 2794, 2803
ApoI RAATTY 9 cut(s) 741, 949, 1495, 1741, 1885, 2723, 2741, 3086, 3525
ArsI GACNNNNNNTTYG 1 cut(s) 37
AseI ATTAAT 2 cut(s) 2541, 2850
Asp700I GAANNNNTTC 5 cut(s) 693, 1467, 1606, 1888, 2742
AspLEI GCGC 2 cut(s) 2901, 3369
AspS9I GGNCC 7 cut(s) 561, 1038, 1039, 1714, 2759, 3097, 3169
AsuHPI GGTGA 9 cut(s) 532, 775, 1022, 1276, 1504, 1686, 1901, 3070, 3376
AsuII TTCGAA 1 cut(s) 526
AvaII GGWCC 4 cut(s) 561, 1714, 2759, 3097
AxyI CCTNAGG 2 cut(s) 3028, 3420
BaeGI GKGCMC 2 cut(s) 372, 1042
BanII GRGCYC 1 cut(s) 1042
BarI GAAGNNNNNNTAC 2 cut(s) 1591, 1623
BbsI GAAGAC 2 cut(s) 2172, 2661
Bbv12I GWGCWC 1 cut(s) 2104
BbvI GCAGC 4 cut(s) 712, 1752, 2806, 2815
BceAI ACGGC 3 cut(s) 163, 448, 2747
BcgI CGANNNNNNTGC 2 cut(s) 473, 507
BciT130I CCWGG 9 cut(s) 615, 686, 729, 788, 992, 1229, 1636, 2056, 2824
BciVI GTATCC 1 cut(s) 621
BclI TGATCA 6 cut(s) 1216, 1342, 1387, 2554, 2599, 3229
BcoDI GTCTC 9 cut(s) 21, 181, 468, 1040, 1352, 1403, 2376, 2400, 2494
BcuI ACTAGT 1 cut(s) 2210
BfaI CTAG 4 cut(s) 1802, 1928, 2070, 2211
BfmI CTRYAG 1 cut(s) 1597
BfoI RGCGCY 1 cut(s) 3370
BfuI GTATCC 1 cut(s) 621
BglII AGATCT 2 cut(s) 2618, 2937
BisI GCNGC 6 cut(s) 57, 701, 1766, 2795, 2804, 3444
BlsI GCNGC 6 cut(s) 58, 702, 1767, 2796, 2805, 3445
BmcAI AGTACT 2 cut(s) 674, 1330
Bme1390I CCNGG 9 cut(s) 615, 686, 729, 788, 992, 1229, 1636, 2056, 2824
Bme18I GGWCC 4 cut(s) 561, 1714, 2759, 3097
BmeRI GACNNNNNGTC 1 cut(s) 1314
BmgBI CACGTC 2 cut(s) 574, 2504
BmgT120I GGNCC 7 cut(s) 561, 1038, 1039, 1714, 2759, 3097, 3169
BmiI GGNNCC 5 cut(s) 1040, 1716, 3098, 3378, 3399
BmrFI CCNGG 9 cut(s) 615, 686, 729, 788, 992, 1229, 1636, 2056, 2824
BmrI ACTGGG 1 cut(s) 2293
BmuI ACTGGG 1 cut(s) 2293
BpiI GAAGAC 2 cut(s) 2172, 2661
BplI GAGNNNNNCTC 2 cut(s) 2020, 2052
BpmI CTGGAG 1 cut(s) 636
Bpu14I TTCGAA 1 cut(s) 526
BpuEI CTTGAG 1 cut(s) 384
BsaBI GATNNNNATC 2 cut(s) 1857, 2200
BsaHI GRCGYC 1 cut(s) 2051
BsaI GGTCTC 1 cut(s) 468
BsaJI CCNNGG 6 cut(s) 551, 684, 786, 990, 2055, 2822
BsaWI WCCGGW 1 cut(s) 304
BsaXI ACNNNNNCTCC 6 cut(s) 143, 173, 437, 467, 665, 695
Bsc4I CCNNNNNNNGG 7 cut(s) 311, 422, 470, 1261, 2047, 2828, 3477
Bse1I ACTGG 6 cut(s) 515, 573, 2288, 2630, 2659, 3131
Bse21I CCTNAGG 2 cut(s) 3028, 3420
Bse3DI GCAATG 4 cut(s) 135, 427, 2651, 2983
Bse8I GATNNNNATC 2 cut(s) 1857, 2200
BseBI CCWGG 9 cut(s) 615, 686, 729, 788, 992, 1229, 1636, 2056, 2824
BseDI CCNNGG 6 cut(s) 551, 684, 786, 990, 2055, 2822
BseGI GGATG 7 cut(s) 241, 259, 358, 934, 1187, 1192, 2332
BseJI GATNNNNATC 2 cut(s) 1857, 2200
BseLI CCNNNNNNNGG 7 cut(s) 311, 422, 470, 1261, 2047, 2828, 3477
BseMI GCAATG 4 cut(s) 135, 427, 2651, 2983
BseNI ACTGG 6 cut(s) 515, 573, 2288, 2630, 2659, 3131
BseRI GAGGAG 6 cut(s) 486, 608, 2039, 2044, 3179, 3377
BseSI GKGCMC 2 cut(s) 372, 1042
BseXI GCAGC 4 cut(s) 712, 1752, 2806, 2815
BseYI CCCAGC 2 cut(s) 2042, 2189
BsgI GTGCAG 2 cut(s) 71, 3021
Bsh1285I CGRYCG 1 cut(s) 1113
BshFI GGCC 7 cut(s) 56, 1040, 1286, 1634, 2986, 3171, 3466
BsiEI CGRYCG 1 cut(s) 1113
BsiHKAI GWGCWC 1 cut(s) 2104
BsiSI CCGG 2 cut(s) 162, 305
BslFI GGGAC 2 cut(s) 2298, 3110
BslI CCNNNNNNNGG 7 cut(s) 311, 422, 470, 1261, 2047, 2828, 3477
BsmAI GTCTC 9 cut(s) 21, 181, 468, 1040, 1352, 1403, 2376, 2400, 2494
BsmBI CGTCTC 2 cut(s) 181, 2494
BsmFI GGGAC 2 cut(s) 2298, 3110
BsmI GAATGC 2 cut(s) 2065, 2781
BsnI GGCC 7 cut(s) 56, 1040, 1286, 1634, 2986, 3171, 3466
Bso31I GGTCTC 1 cut(s) 468
Bsp119I TTCGAA 1 cut(s) 526
Bsp120I GGGCCC 1 cut(s) 1038
Bsp1286I GDGCHC 3 cut(s) 372, 1042, 2104
BspACI CCGC 3 cut(s) 57, 1779, 3443
BspANI GGCC 7 cut(s) 56, 1040, 1286, 1634, 2986, 3171, 3466
BspHI TCATGA 1 cut(s) 2677
BspLI GGNNCC 5 cut(s) 1040, 1716, 3098, 3378, 3399
BspPI GGATC 6 cut(s) 772, 829, 977, 1451, 1925, 3422
BspQI GCTCTTC 1 cut(s) 739
BspT104I TTCGAA 1 cut(s) 526
BspTNI GGTCTC 1 cut(s) 468
BsrDI GCAATG 4 cut(s) 135, 427, 2651, 2983
BsrI ACTGG 6 cut(s) 515, 573, 2288, 2630, 2659, 3131
BssECI CCNNGG 6 cut(s) 551, 684, 786, 990, 2055, 2822
BssNI GRCGYC 1 cut(s) 2051
BssT1I CCWWGG 1 cut(s) 551
Bst2UI CCWGG 9 cut(s) 615, 686, 729, 788, 992, 1229, 1636, 2056, 2824
Bst4CI ACNGT 9 cut(s) 248, 717, 853, 1223, 1445, 1649, 2086, 2312, 3436
Bst6I CTCTTC 1 cut(s) 739
BstACI GRCGYC 1 cut(s) 2051
BstBI TTCGAA 1 cut(s) 526
BstC8I GCNNGC 5 cut(s) 54, 725, 932, 1517, 3468
BstEII GGTNACC 1 cut(s) 1692
BstF5I GGATG 7 cut(s) 241, 259, 358, 934, 1187, 1192, 2332
BstH2I RGCGCY 1 cut(s) 3370
BstHHI GCGC 2 cut(s) 2901, 3369
BstMAI GTCTC 9 cut(s) 21, 181, 468, 1040, 1352, 1403, 2376, 2400, 2494
BstMCI CGRYCG 1 cut(s) 1113
BstMWI GCNNNNNNNGC 8 cut(s) 62, 156, 729, 758, 2528, 2800, 2803, 3463
BstNI CCWGG 9 cut(s) 615, 686, 729, 788, 992, 1229, 1636, 2056, 2824
BstNSI RCATGY 3 cut(s) 727, 2590, 3224
BstPI GGTNACC 1 cut(s) 1692
BstSCI CCNGG 9 cut(s) 613, 684, 727, 786, 990, 1227, 1634, 2054, 2822
BstSFI CTRYAG 1 cut(s) 1597
BstSLI GKGCMC 2 cut(s) 372, 1042
BstV1I GCAGC 4 cut(s) 712, 1752, 2806, 2815
BstV2I GAAGAC 2 cut(s) 2172, 2661
BstX2I RGATCY 4 cut(s) 764, 1930, 2618, 2937
BstXI CCANNNNNNTGG 3 cut(s) 945, 1235, 2323
BstYI RGATCY 4 cut(s) 764, 1930, 2618, 2937
Bsu36I CCTNAGG 2 cut(s) 3028, 3420
BsuI GTATCC 1 cut(s) 621
BsuRI GGCC 7 cut(s) 56, 1040, 1286, 1634, 2986, 3171, 3466
BtrI CACGTC 2 cut(s) 574, 2504
BtsCI GGATG 7 cut(s) 241, 259, 358, 934, 1187, 1192, 2332
BtsI GCAGTG 1 cut(s) 3488
BtsIMutI CAGTG 9 cut(s) 36, 240, 253, 522, 1189, 1450, 2019, 2082, 3488
Cac8I GCNNGC 5 cut(s) 54, 725, 932, 1517, 3468
CaiI CAGNNNCTG 1 cut(s) 857
CciI TCATGA 1 cut(s) 2677
CfoI GCGC 2 cut(s) 2901, 3369
Cfr13I GGNCC 7 cut(s) 561, 1038, 1039, 1714, 2759, 3097, 3169
CseI GACGC 1 cut(s) 2040
CsiI ACCWGGT 1 cut(s) 1227
Csp6I GTAC 3 cut(s) 673, 1329, 2729
CviQI GTAC 3 cut(s) 673, 1329, 2729
DraIII CACNNNGTG 1 cut(s) 3253
DriI GACNNNNNGTC 1 cut(s) 1314
Eam1104I CTCTTC 1 cut(s) 739
Eam1105I GACNNNNNGTC 1 cut(s) 1314
EarI CTCTTC 1 cut(s) 739
Eco130I CCWWGG 1 cut(s) 551
Eco24I GRGCYC 1 cut(s) 1042
Eco31I GGTCTC 1 cut(s) 468
Eco32I GATATC 1 cut(s) 1579
Eco47I GGWCC 4 cut(s) 561, 1714, 2759, 3097
Eco47III AGCGCT 1 cut(s) 3368
Eco57I CTGAAG 6 cut(s) 45, 1449, 2655, 2673, 3317, 3468
Eco81I CCTNAGG 2 cut(s) 3028, 3420
Eco91I GGTNACC 1 cut(s) 1692
EcoO109I RGGNCCY 2 cut(s) 1038, 1714
EcoO65I GGTNACC 1 cut(s) 1692
EcoRI GAATTC 3 cut(s) 949, 1495, 3525
EcoRII CCWGG 9 cut(s) 613, 684, 727, 786, 990, 1227, 1634, 2054, 2822
EcoRV GATATC 1 cut(s) 1579
EcoT14I CCWWGG 1 cut(s) 551
EcoT22I ATGCAT 2 cut(s) 1352, 2871
EcoT38I GRGCYC 1 cut(s) 1042
ErhI CCWWGG 1 cut(s) 551
Esp3I CGTCTC 2 cut(s) 181, 2494
FalI AAGNNNNNCTT 2 cut(s) 1951, 1983
FaqI GGGAC 2 cut(s) 2298, 3110
FauNDI CATATG 3 cut(s) 832, 1936, 3123
FbaI TGATCA 6 cut(s) 1216, 1342, 1387, 2554, 2599, 3229
Fnu4HI GCNGC 6 cut(s) 57, 701, 1766, 2795, 2804, 3444
FokI GGATG 7 cut(s) 248, 266, 365, 921, 1174, 1179, 2339
FriOI GRGCYC 1 cut(s) 1042
Fsp4HI GCNGC 6 cut(s) 57, 701, 1766, 2795, 2804, 3444
FspBI CTAG 4 cut(s) 1802, 1928, 2070, 2211
GlaI GCGC 2 cut(s) 2900, 3368
GluI GCNGC 6 cut(s) 57, 701, 1766, 2795, 2804, 3444
GsaI CCCAGC 2 cut(s) 2046, 2193
GsuI CTGGAG 1 cut(s) 636
HaeII RGCGCY 1 cut(s) 3370
HaeIII GGCC 7 cut(s) 56, 1040, 1286, 1634, 2986, 3171, 3466
HapII CCGG 2 cut(s) 162, 305
HgaI GACGC 1 cut(s) 2040
HhaI GCGC 2 cut(s) 2901, 3369
Hin1I GRCGYC 1 cut(s) 2051
Hin6I GCGC 2 cut(s) 2899, 3367
HinP1I GCGC 2 cut(s) 2899, 3367
HindIII AAGCTT 1 cut(s) 1431
HpaII CCGG 2 cut(s) 162, 305
HphI GGTGA 9 cut(s) 532, 775, 1022, 1276, 1504, 1686, 1901, 3070, 3376
Hpy166II GTNNAC 4 cut(s) 1751, 2019, 2308, 2664
Hpy188III TCNNGA 8 cut(s) 500, 1319, 1460, 1802, 2266, 2381, 2451, 2678
Hpy8I GTNNAC 4 cut(s) 1751, 2019, 2308, 2664
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 6 cut(s) 1750, 2106, 2286, 2420, 3052, 3302
HpyCH4III ACNGT 9 cut(s) 248, 717, 853, 1223, 1445, 1649, 2086, 2312, 3436
HpyCH4IV ACGT 4 cut(s) 573, 2503, 2710, 3358
HpyF10VI GCNNNNNNNGC 8 cut(s) 62, 156, 729, 758, 2528, 2800, 2803, 3463
HpySE526I ACGT 4 cut(s) 573, 2503, 2710, 3358
Hsp92I GRCGYC 1 cut(s) 2051
HspAI GCGC 2 cut(s) 2899, 3367
Ksp22I TGATCA 6 cut(s) 1216, 1342, 1387, 2554, 2599, 3229
LguI GCTCTTC 1 cut(s) 739
LmnI GCTCC 8 cut(s) 164, 1063, 2393, 2957, 3352, 3364, 3376, 3397
Lsp1109I GCAGC 4 cut(s) 712, 1752, 2806, 2815
MabI ACCWGGT 1 cut(s) 1227
MaeI CTAG 4 cut(s) 1802, 1928, 2070, 2211
MaeII ACGT 4 cut(s) 573, 2503, 2710, 3358
MaeIII GTNAC 9 cut(s) 1223, 1306, 1522, 1692, 1784, 1907, 1997, 2279, 3133
MflI RGATCY 4 cut(s) 764, 1930, 2618, 2937
MhlI GDGCHC 3 cut(s) 372, 1042, 2104
MlyI GAGTC 8 cut(s) 239, 391, 446, 1202, 2005, 2041, 2841, 3503
MmeI TCCRAC 3 cut(s) 213, 926, 2278
Mph1103I ATGCAT 2 cut(s) 1352, 2871
MroXI GAANNNNTTC 5 cut(s) 693, 1467, 1606, 1888, 2742
MslI CAYNNNNRTG 5 cut(s) 1008, 2562, 2679, 2682, 3225
MspA1I CMGCKG 2 cut(s) 663, 2420
MspI CCGG 2 cut(s) 162, 305
MspR9I CCNGG 9 cut(s) 615, 686, 729, 788, 992, 1229, 1636, 2056, 2824
Mva1269I GAATGC 2 cut(s) 2065, 2781
MvaI CCWGG 9 cut(s) 615, 686, 729, 788, 992, 1229, 1636, 2056, 2824
MwoI GCNNNNNNNGC 8 cut(s) 62, 156, 729, 758, 2528, 2800, 2803, 3463
NdeI CATATG 3 cut(s) 832, 1936, 3123
NlaIV GGNNCC 5 cut(s) 1040, 1716, 3098, 3378, 3399
NmuCI GTSAC 5 cut(s) 1306, 1522, 1692, 1907, 1997
NsiI ATGCAT 2 cut(s) 1352, 2871
NspI RCATGY 3 cut(s) 727, 2590, 3224
NspV TTCGAA 1 cut(s) 526
PaeI GCATGC 1 cut(s) 727
PagI TCATGA 1 cut(s) 2677
PciI ACATGT 1 cut(s) 2586
PciSI GCTCTTC 1 cut(s) 739
PcsI WCGNNNNNNNCGW 1 cut(s) 461
PctI GAATGC 2 cut(s) 2065, 2781
PdmI GAANNNNTTC 5 cut(s) 693, 1467, 1606, 1888, 2742
PflMI CCANNNNNTGG 1 cut(s) 422
PfoI TCCNGGA 1 cut(s) 613
PkrI GCNGC 6 cut(s) 58, 702, 1767, 2796, 2805, 3445
PleI GAGTC 8 cut(s) 238, 391, 445, 1202, 2004, 2040, 2840, 3503
PpsI GAGTC 8 cut(s) 238, 391, 445, 1202, 2004, 2040, 2840, 3503
PpuMI RGGWCCY 1 cut(s) 1714
PscI ACATGT 1 cut(s) 2586
PshBI ATTAAT 2 cut(s) 2541, 2850
PsiI TTATAA 2 cut(s) 1809, 2154
Psp5II RGGWCCY 1 cut(s) 1714
Psp6I CCWGG 9 cut(s) 613, 684, 727, 786, 990, 1227, 1634, 2054, 2822
PspEI GGTNACC 1 cut(s) 1692
PspFI CCCAGC 2 cut(s) 2042, 2189
PspGI CCWGG 9 cut(s) 613, 684, 727, 786, 990, 1227, 1634, 2054, 2822
PspN4I GGNNCC 5 cut(s) 1040, 1716, 3098, 3378, 3399
PspOMI GGGCCC 1 cut(s) 1038
PspPI GGNCC 7 cut(s) 561, 1038, 1039, 1714, 2759, 3097, 3169
PspPPI RGGWCCY 1 cut(s) 1714
PstNI CAGNNNCTG 1 cut(s) 857
PsuI RGATCY 4 cut(s) 764, 1930, 2618, 2937
PvuII CAGCTG 2 cut(s) 663, 2420
RsaI GTAC 3 cut(s) 674, 1330, 2730
RsaNI GTAC 3 cut(s) 673, 1329, 2729
RseI CAYNNNNRTG 5 cut(s) 1008, 2562, 2679, 2682, 3225
SapI GCTCTTC 1 cut(s) 739
SatI GCNGC 6 cut(s) 57, 701, 1766, 2795, 2804, 3444
Sau96I GGNCC 7 cut(s) 561, 1038, 1039, 1714, 2759, 3097, 3169
ScaI AGTACT 2 cut(s) 674, 1330
SchI GAGTC 8 cut(s) 239, 391, 446, 1202, 2005, 2041, 2841, 3503
ScrFI CCNGG 9 cut(s) 615, 686, 729, 788, 992, 1229, 1636, 2056, 2824
SduI GDGCHC 3 cut(s) 372, 1042, 2104
SexAI ACCWGGT 1 cut(s) 1227
SfcI CTRYAG 1 cut(s) 1597
SfuI TTCGAA 1 cut(s) 526
SinI GGWCC 4 cut(s) 561, 1714, 2759, 3097
SmiMI CAYNNNNRTG 5 cut(s) 1008, 2562, 2679, 2682, 3225
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
SpeI ACTAGT 1 cut(s) 2210
SphI GCATGC 1 cut(s) 727
SsiI CCGC 3 cut(s) 57, 1779, 3443
SspI AATATT 1 cut(s) 2360
SspMI CTAG 4 cut(s) 1802, 1928, 2070, 2211
StyD4I CCNGG 9 cut(s) 613, 684, 727, 786, 990, 1227, 1634, 2054, 2822
StyI CCWWGG 1 cut(s) 551
TaaI ACNGT 9 cut(s) 248, 717, 853, 1223, 1445, 1649, 2086, 2312, 3436
TaiI ACGT 4 cut(s) 576, 2506, 2713, 3361
TaqI TCGA 8 cut(s) 45, 526, 544, 2215, 2380, 2577, 2909, 2969
TaqII GACCGA 2 cut(s) 1127, 3114
TatI WGTACW 2 cut(s) 672, 1328
TauI GCSGC 2 cut(s) 59, 3446
TscAI CASTG 9 cut(s) 43, 247, 253, 522, 1189, 1450, 2026, 2089, 3488
TseFI GTSAC 5 cut(s) 1306, 1522, 1692, 1907, 1997
TseI GCWGC 4 cut(s) 700, 1765, 2794, 2803
Tsp45I GTSAC 5 cut(s) 1306, 1522, 1692, 1907, 1997
TspGWI ACGGA 1 cut(s) 831
TspRI CASTG 9 cut(s) 43, 247, 253, 522, 1189, 1450, 2026, 2089, 3488
Van91I CCANNNNNTGG 1 cut(s) 422
VpaK11BI GGWCC 4 cut(s) 561, 1714, 2759, 3097
VspI ATTAAT 2 cut(s) 2541, 2850
XapI RAATTY 9 cut(s) 741, 949, 1495, 1741, 1885, 2723, 2741, 3086, 3525
XbaI TCTAGA 1 cut(s) 1801
XceI RCATGY 3 cut(s) 727, 2590, 3224
XcmI CCANNNNNNNNNTGG 3 cut(s) 202, 439, 571
XmnI GAANNNNTTC 5 cut(s) 693, 1467, 1606, 1888, 2742
XspI CTAG 4 cut(s) 1802, 1928, 2070, 2211
ZrmI AGTACT 2 cut(s) 674, 1330
Zsp2I ATGCAT 2 cut(s) 1352, 2871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.