RLG00000007642

Protein kinase C conserved region 2 (CalB)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0009797
Physical Location & Seq
Reverse (-)
19344727 .. 19347784
3058 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007642

Sequence Viewer

Length: 660 bp
ATGGAACAAAGGACTCTGGAGCTGGAGCTGGTCTCCGCCAAGGACCTGAAGGACGTGAACCTCATCTCCAAGATGGACGTCTACGCCGTCGTCTCCCTCGACGGCGACGCCTACTACGGCAAGCAGAAGACCAAGACCAAAGTCGTCCGCGCCTGCGGCACCAACCCCACCTTCAACTTCCCCATGAGGTTCACCGTCGACGACACTCTCACCCAGCAGAACCGCCTCTCCCTCCAAGTCAAGCTCGTCTGCGAGCGCAGCCTCGGCGACAAGGACATCGGCGTCGTTTACGTCCCCGTCAAGGAGCTCTTCGACTCCGCCGACCCCAAGAACATGAAGTTCATATCGTACCAGAGCGATGACTGGCTTCTAGTTTGGTTGTGGCTTGAAGGTTGGCATCACGGAGTCGGTGATGGTAGGACAGACGTGAACCAGTCAGTTGGTGTTGGAGCAGATGTGGCGGCCGATGCCTATCGCGCAGAGATATGTTGGAGTACCCAAAAGGGGCTGGGTGTCCAGATCAGATGTGGCCAATGTGTTGGGCTTACTTGCGGCCCAAATCAGATGGTTGGTTTCTCCATGGGGCTGGATAGCTTGGAAGTGGGCTCAACTTGTACTAACGAGATCCATGGAAGAGTATCTGCTGAAGAAGCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169
Pfam Domains
Protein Families
C2

Protein Analysis

220

Amino Acids

24.12

Weight (kDa)

5.0

Isoelectric Point (pI)

25.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 5 - 107 1.2e-14 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 281
AatII GACGTC 1 cut(s) 81
AccB1I GGYRCC 1 cut(s) 158
AccI GTMKAC 2 cut(s) 81, 198
AccII CGCG 2 cut(s) 150, 477
AciI CCGC 7 cut(s) 36, 148, 156, 223, 318, 461, 552
AclWI GGATC 1 cut(s) 619
AcoI YGGCCR 2 cut(s) 462, 529
AcuI CTGAAG 1 cut(s) 68
AcyI GRCGYC 3 cut(s) 78, 108, 282
AfaI GTAC 3 cut(s) 350, 496, 616
AfiI CCNNNNNNNGG 2 cut(s) 301, 504
AgsI TTSAA 2 cut(s) 175, 389
AjiI CACGTC 2 cut(s) 55, 427
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AloI GAACNNNNNNTCC 4 cut(s) 50, 82, 212, 244
AluBI AGCT 5 cut(s) 22, 28, 244, 307, 594
AluI AGCT 5 cut(s) 22, 28, 244, 307, 594
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 2 cut(s) 37, 97
AlwI GGATC 1 cut(s) 619
AoxI GGCC 3 cut(s) 462, 529, 553
ApeKI GCWGC 2 cut(s) 258, 653
AspLEI GCGC 3 cut(s) 152, 258, 479
AspS9I GGNCC 2 cut(s) 43, 554
AsuHPI GGTGA 3 cut(s) 184, 202, 422
AvaII GGWCC 1 cut(s) 43
BalI TGGCCA 1 cut(s) 531
BanI GGYRCC 1 cut(s) 158
BanII GRGCYC 2 cut(s) 309, 608
BbsI GAAGAC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 270
BccI CCATC 3 cut(s) 67, 407, 559
BceAI ACGGC 3 cut(s) 71, 118, 133
BcoDI GTCTC 2 cut(s) 37, 97
BfaI CTAG 1 cut(s) 371
BisI GCNGC 5 cut(s) 157, 259, 462, 553, 654
BlsI GCNGC 5 cut(s) 158, 260, 463, 554, 655
Bme18I GGWCC 1 cut(s) 43
BmgBI CACGTC 2 cut(s) 55, 427
BmgT120I GGNCC 2 cut(s) 43, 554
BmiI GGNNCC 1 cut(s) 160
BmsI GCATC 2 cut(s) 406, 457
BoxI GACNNNNGTC 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 134
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BpmI CTGGAG 2 cut(s) 38, 44
BsaBI GATNNNNATC 1 cut(s) 471
BsaHI GRCGYC 3 cut(s) 78, 108, 282
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 4 cut(s) 39, 262, 579, 628
BsaXI ACNNNNNCTCC 6 cut(s) 50, 80, 212, 242, 441, 471
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 504
Bse1I ACTGG 2 cut(s) 368, 433
Bse8I GATNNNNATC 1 cut(s) 471
BseDI CCNNGG 4 cut(s) 39, 262, 579, 628
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 2 cut(s) 301, 504
BseNI ACTGG 2 cut(s) 368, 433
BseX3I CGGCCG 1 cut(s) 462
BseXI GCAGC 1 cut(s) 270
BseYI CCCAGC 2 cut(s) 213, 508
Bsh1236I CGCG 2 cut(s) 150, 477
Bsh1285I CGRYCG 1 cut(s) 465
BshFI GGCC 3 cut(s) 464, 531, 555
BshNI GGYRCC 1 cut(s) 158
BsiEI CGRYCG 1 cut(s) 465
BsiHKAI GWGCWC 1 cut(s) 309
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 2 cut(s) 301, 504
BsmAI GTCTC 2 cut(s) 37, 97
BsmBI CGTCTC 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 3 cut(s) 464, 531, 555
Bso31I GGTCTC 1 cut(s) 37
Bsp1286I GDGCHC 2 cut(s) 309, 608
Bsp143I GATC 2 cut(s) 519, 624
Bsp19I CCATGG 2 cut(s) 579, 628
BspACI CCGC 7 cut(s) 36, 148, 156, 223, 318, 461, 552
BspANI GGCC 3 cut(s) 464, 531, 555
BspFNI CGCG 2 cut(s) 150, 477
BspLI GGNNCC 1 cut(s) 160
BspPI GGATC 1 cut(s) 619
BspQI GCTCTTC 1 cut(s) 314
BspT107I GGYRCC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 37
BsrI ACTGG 2 cut(s) 368, 433
BssECI CCNNGG 4 cut(s) 39, 262, 579, 628
BssMI GATC 2 cut(s) 519, 624
BssNI GRCGYC 3 cut(s) 78, 108, 282
BssT1I CCWWGG 3 cut(s) 39, 579, 628
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 2 cut(s) 314, 628
BstACI GRCGYC 3 cut(s) 78, 108, 282
BstC8I GCNNGC 3 cut(s) 122, 154, 254
BstDSI CCRYGG 2 cut(s) 579, 628
BstFNI CGCG 2 cut(s) 150, 477
BstHHI GCGC 3 cut(s) 152, 258, 479
BstKTI GATC 2 cut(s) 522, 627
BstMAI GTCTC 2 cut(s) 37, 97
BstMBI GATC 2 cut(s) 519, 624
BstMCI CGRYCG 1 cut(s) 465
BstMWI GCNNNNNNNGC 7 cut(s) 156, 258, 264, 458, 467, 476, 650
BstPAI GACNNNNGTC 1 cut(s) 140
BstUI CGCG 2 cut(s) 150, 477
BstV1I GCAGC 1 cut(s) 270
BstV2I GAAGAC 1 cut(s) 134
BstX2I RGATCY 1 cut(s) 624
BstXI CCANNNNNNTGG 3 cut(s) 440, 539, 586
BstYI RGATCY 1 cut(s) 624
BstZI CGGCCG 1 cut(s) 462
BsuRI GGCC 3 cut(s) 464, 531, 555
BtgI CCRYGG 2 cut(s) 579, 628
BtgZI GCGATG 1 cut(s) 372
BtrI CACGTC 2 cut(s) 55, 427
Cac8I GCNNGC 3 cut(s) 122, 154, 254
CfoI GCGC 3 cut(s) 152, 258, 479
Cfr13I GGNCC 2 cut(s) 43, 554
CseI GACGC 2 cut(s) 116, 271
Csp6I GTAC 3 cut(s) 349, 495, 615
CviAII CATG 5 cut(s) 184, 334, 580, 629, 657
CviQI GTAC 3 cut(s) 349, 495, 615
DpnI GATC 2 cut(s) 521, 626
DpnII GATC 2 cut(s) 519, 624
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
EaeI YGGCCR 2 cut(s) 462, 529
EagI CGGCCG 1 cut(s) 462
Eam1104I CTCTTC 2 cut(s) 314, 628
EarI CTCTTC 2 cut(s) 314, 628
EciI GGCGGA 2 cut(s) 25, 307
Ecl136II GAGCTC 1 cut(s) 307
EclXI CGGCCG 1 cut(s) 462
Eco130I CCWWGG 3 cut(s) 39, 579, 628
Eco24I GRGCYC 2 cut(s) 309, 608
Eco31I GGTCTC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 43
Eco52I CGGCCG 1 cut(s) 462
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 43
EcoT14I CCWWGG 3 cut(s) 39, 579, 628
EcoT38I GRGCYC 2 cut(s) 309, 608
ErhI CCWWGG 3 cut(s) 39, 579, 628
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 5 cut(s) 187, 337, 583, 632, 660
FaiI YATR 7 cut(s) 185, 335, 344, 487, 581, 630, 658
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FaqI GGGAC 1 cut(s) 278
FatI CATG 5 cut(s) 183, 333, 579, 628, 656
FblI GTMKAC 2 cut(s) 81, 198
Fnu4HI GCNGC 5 cut(s) 157, 259, 462, 553, 654
FriOI GRGCYC 2 cut(s) 309, 608
Fsp4HI GCNGC 5 cut(s) 157, 259, 462, 553, 654
FspBI CTAG 1 cut(s) 371
GlaI GCGC 3 cut(s) 151, 257, 478
GluI GCNGC 5 cut(s) 157, 259, 462, 553, 654
GsaI CCCAGC 2 cut(s) 217, 512
GsuI CTGGAG 2 cut(s) 38, 44
HaeIII GGCC 3 cut(s) 464, 531, 555
HgaI GACGC 2 cut(s) 116, 271
HhaI GCGC 3 cut(s) 152, 258, 479
Hin1I GRCGYC 3 cut(s) 78, 108, 282
Hin1II CATG 5 cut(s) 187, 337, 583, 632, 660
Hin6I GCGC 3 cut(s) 150, 256, 477
HinP1I GCGC 3 cut(s) 150, 256, 477
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 3 cut(s) 13, 314, 405
HphI GGTGA 3 cut(s) 184, 202, 422
Hpy166II GTNNAC 6 cut(s) 58, 82, 192, 199, 289, 430
Hpy188I TCNGA 2 cut(s) 524, 564
Hpy188III TCNNGA 2 cut(s) 17, 517
Hpy8I GTNNAC 6 cut(s) 58, 82, 192, 199, 289, 430
Hpy99I CGWCG 6 cut(s) 92, 104, 110, 200, 203, 287
HpyAV CCTTC 3 cut(s) 43, 181, 383
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 4 cut(s) 54, 78, 291, 426
HpyF10VI GCNNNNNNNGC 7 cut(s) 156, 258, 264, 458, 467, 476, 650
HpySE526I ACGT 4 cut(s) 54, 78, 291, 426
Hsp92I GRCGYC 3 cut(s) 78, 108, 282
Hsp92II CATG 5 cut(s) 187, 337, 583, 632, 660
HspAI GCGC 3 cut(s) 150, 256, 477
Kzo9I GATC 2 cut(s) 519, 624
LguI GCTCTTC 1 cut(s) 314
LmnI GCTCC 4 cut(s) 19, 25, 304, 449
Lsp1109I GCAGC 1 cut(s) 270
LweI GCATC 2 cut(s) 406, 457
MaeI CTAG 1 cut(s) 371
MaeII ACGT 4 cut(s) 54, 78, 291, 426
MalI GATC 2 cut(s) 521, 626
MboI GATC 2 cut(s) 519, 624
MboII GAAGA 4 cut(s) 139, 301, 645, 659
MflI RGATCY 1 cut(s) 624
MhlI GDGCHC 2 cut(s) 309, 608
MlsI TGGCCA 1 cut(s) 531
MluNI TGGCCA 1 cut(s) 531
MlyI GAGTC 3 cut(s) 7, 308, 414
MmeI TCCRAC 2 cut(s) 427, 470
MnlI CCTC 6 cut(s) 71, 107, 180, 236, 242, 272
Mox20I TGGCCA 1 cut(s) 531
MscI TGGCCA 1 cut(s) 531
Msp20I TGGCCA 1 cut(s) 531
MvnI CGCG 2 cut(s) 150, 477
MwoI GCNNNNNNNGC 7 cut(s) 156, 258, 264, 458, 467, 476, 650
NcoI CCATGG 2 cut(s) 579, 628
NdeII GATC 2 cut(s) 519, 624
NlaIII CATG 5 cut(s) 187, 337, 583, 632, 660
NlaIV GGNNCC 1 cut(s) 160
NmeAIII GCCGAG 1 cut(s) 243
PciSI GCTCTTC 1 cut(s) 314
PcsI WCGNNNNNNNCGW 3 cut(s) 84, 96, 318
PkrI GCNGC 5 cut(s) 158, 260, 463, 554, 655
PleI GAGTC 3 cut(s) 7, 308, 413
PpsI GAGTC 3 cut(s) 7, 308, 413
PpuMI RGGWCCY 1 cut(s) 43
PshAI GACNNNNGTC 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 43
PspFI CCCAGC 2 cut(s) 213, 508
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 2 cut(s) 43, 554
PspPPI RGGWCCY 1 cut(s) 43
PsuI RGATCY 1 cut(s) 624
RsaI GTAC 3 cut(s) 350, 496, 616
RsaNI GTAC 3 cut(s) 349, 495, 615
SacI GAGCTC 1 cut(s) 309
SalI GTCGAC 1 cut(s) 197
SapI GCTCTTC 1 cut(s) 314
SatI GCNGC 5 cut(s) 157, 259, 462, 553, 654
Sau3AI GATC 2 cut(s) 519, 624
Sau96I GGNCC 2 cut(s) 43, 554
SchI GAGTC 3 cut(s) 7, 308, 414
SduI GDGCHC 2 cut(s) 309, 608
SfaNI GCATC 2 cut(s) 406, 457
SgrDI CGTCGACG 1 cut(s) 197
SinI GGWCC 1 cut(s) 43
SsiI CCGC 7 cut(s) 36, 148, 156, 223, 318, 461, 552
SspMI CTAG 1 cut(s) 371
SstI GAGCTC 1 cut(s) 309
StyI CCWWGG 3 cut(s) 39, 579, 628
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 4 cut(s) 57, 81, 294, 429
TaqI TCGA 3 cut(s) 99, 198, 312
TatI WGTACW 1 cut(s) 614
TauI GCSGC 3 cut(s) 159, 464, 555
TseI GCWGC 2 cut(s) 258, 653
TspDTI ATGAA 2 cut(s) 331, 350
TspGWI ACGGA 1 cut(s) 417
VpaK11BI GGWCC 1 cut(s) 43
XcmI CCANNNNNNNNNTGG 1 cut(s) 524
XmiI GTMKAC 2 cut(s) 81, 198
XspI CTAG 1 cut(s) 371
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.