Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015769

Physical Location & Seq

Genomic Coordinates Reverse (-)

20914342 .. 20915062

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007775

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCAATCCAGAGGGAGAAACAAGCACCGGTAGCAGCTCTGGCGGTGGTAGGTTCGGCCTTAGGAACGCCGTCCTCTGCTGTGCATGGTAGTAGGGTGGGGTCAACAGGGAAGAAGAATGATGTTCGGAGAGGTCAGAGCAGCCTGGCGTTGGGAGGTGCGTCATTGGGCTGTCTGTTCAAGGCCCAGTTAGAGTTGGCTAGGGTTGGAAAGAAGCCGAAGTTGGCAGATGGGGTGCTATCTGGTCCACTGAGTTTTGAGCCGGGGTTTGATCTCTCGAATACAAATGGAGTCATTTACTTATCCCCTAAGAAACGTGGTTGCCCTAAAGGCAGCAGGAATATAGCTAGGCCTACGTTGGGGGTTCCAAAACCAAAGAAGAAACGGTACCCTAAGAAGACTGAGGCTCCAAAGAATGGAGACATGTCGGGGAGTTCAAGTTTTTCTTCCCCTGAAGCAGTGCAGGTGGAGACAACAGGAACACATGACGAAGCAACAATGGAGGATGCCGCCAATTTGGCATCAGGTGATCATTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

18.66

Weight (kDa)

9.79

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015769)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007775 RLG00000013915 RLG00000013916 RLG00000016936 RLG00000019193 RLG00000030532 RLG00000033599 RLG00000034539
rosa_multiflora	Rmu_sc0002378.1_g000019
rosa_roxburghii	Rroxscaffold_3G00219960 Rroxscaffold_4G00329080 Rroxscaffold_5G00343050
rosa_rugosa	Rorug02G0085600
rosa_samantha	Rh6AG180100 Rh6BG163900 Rh7AG490700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	454
Acc36I	ACCTGC	1 cut(s)	454
Acc65I	GGTACC	1 cut(s)	387
AccB1I	GGYRCC	1 cut(s)	387
AccB7I	CCANNNNNTGG	1 cut(s)	416
AciI	CCGC	2 cut(s)	44, 510
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	3 cut(s)	151, 359, 416
AflIII	ACRYGT	1 cut(s)	423
AgeI	ACCGGT	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	181, 438
AjnI	CCWGG	1 cut(s)	144
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	2 cut(s)	38, 347
AluI	AGCT	2 cut(s)	38, 347
Alw26I	GTCTC	2 cut(s)	414, 464
AoxI	GGCC	3 cut(s)	57, 183, 350
ApeKI	GCWGC	3 cut(s)	35, 141, 333
AsiGI	ACCGGT	1 cut(s)	28
Asp718I	GGTACC	1 cut(s)	387
AspS9I	GGNCC	2 cut(s)	184, 245
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	245
AxyI	CCTNAGG	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	387
BarI	GAAGNNNNNNTAC	2 cut(s)	371, 403
BbsI	GAAGAC	1 cut(s)	404
BbvI	GCAGC	3 cut(s)	47, 153, 345
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	146
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	2 cut(s)	414, 464
BfaI	CTAG	2 cut(s)	201, 348
BfuAI	ACCTGC	1 cut(s)	454
BglI	GCCNNNNNGGC	2 cut(s)	330, 518
BisI	GCNGC	4 cut(s)	36, 142, 334, 510
BlsI	GCNGC	4 cut(s)	37, 143, 335, 511
Bme1390I	CCNGG	2 cut(s)	146, 264
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	184, 245
BmiI	GGNNCC	3 cut(s)	366, 389, 408
BmrFI	CCNGG	2 cut(s)	146, 264
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	2 cut(s)	496, 530
BmuI	ACTGGG	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	263
BsaWI	WCCGGW	1 cut(s)	28
BsaXI	ACNNNNNCTCC	4 cut(s)	391, 421, 424, 454
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 359, 416
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	187
Bse21I	CCTNAGG	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	3 cut(s)	151, 359, 416
BseMII	CTCAG	2 cut(s)	242, 393
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	3 cut(s)	47, 153, 345
BsgI	GTGCAG	1 cut(s)	482
BshFI	GGCC	3 cut(s)	59, 185, 352
BshNI	GGYRCC	1 cut(s)	387
BshTI	ACCGGT	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	29, 263
BslI	CCNNNNNNNGG	3 cut(s)	151, 359, 416
BsmAI	GTCTC	2 cut(s)	414, 464
BsnI	GGCC	3 cut(s)	59, 185, 352
Bsp143I	GATC	2 cut(s)	271, 529
BspACI	CCGC	2 cut(s)	44, 510
BspANI	GGCC	3 cut(s)	59, 185, 352
BspCNI	CTCAG	2 cut(s)	243, 394
BspLI	GGNNCC	3 cut(s)	366, 389, 408
BspMI	ACCTGC	1 cut(s)	454
BspT107I	GGYRCC	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	2 cut(s)	271, 529
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	387
BstDEI	CTNAG	5 cut(s)	61, 251, 309, 393, 402
BstF5I	GGATG	1 cut(s)	511
BstKTI	GATC	2 cut(s)	274, 532
BstMAI	GTCTC	2 cut(s)	414, 464
BstMBI	GATC	2 cut(s)	271, 529
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 41, 330, 518
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	2 cut(s)	144, 262
BstV1I	GCAGC	3 cut(s)	47, 153, 345
BstV2I	GAAGAC	1 cut(s)	404
Bsu36I	CCTNAGG	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	59, 185, 352
BtsCI	GGATG	1 cut(s)	511
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	2 cut(s)	248, 465
BveI	ACCTGC	1 cut(s)	454
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	184, 245
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	388
CspAI	ACCGGT	1 cut(s)	28
CviAII	CATG	3 cut(s)	86, 424, 485
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	5 cut(s)	61, 251, 309, 393, 402
DpnI	GATC	2 cut(s)	273, 531
DpnII	GATC	2 cut(s)	271, 529
Eco147I	AGGCCT	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	474
Eco81I	CCTNAGG	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	144
FaeI	CATG	3 cut(s)	89, 427, 488
FaiI	YATR	4 cut(s)	87, 344, 425, 486
FalI	AAGNNNNNCTT	2 cut(s)	430, 462
FatI	CATG	3 cut(s)	85, 423, 484
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	4 cut(s)	36, 142, 334, 510
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	4 cut(s)	36, 142, 334, 510
FspBI	CTAG	2 cut(s)	201, 348
GluI	GCNGC	4 cut(s)	36, 142, 334, 510
HaeIII	GGCC	3 cut(s)	59, 185, 352
HapII	CCGG	2 cut(s)	29, 263
HgaI	GACGC	1 cut(s)	150
Hin1II	CATG	3 cut(s)	89, 427, 488
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HinfI	GANTC	1 cut(s)	291
HpaII	CCGG	2 cut(s)	29, 263
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	2 cut(s)	105, 248
Hpy188I	TCNGA	2 cut(s)	129, 138
Hpy188III	TCNNGA	2 cut(s)	10, 277
Hpy8I	GTNNAC	2 cut(s)	105, 248
HpyCH4III	ACNGT	1 cut(s)	387
HpyCH4IV	ACGT	2 cut(s)	316, 356
HpyCH4V	TGCA	2 cut(s)	85, 463
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 41, 330, 518
HpyF3I	CTNAG	5 cut(s)	61, 251, 309, 393, 402
HpySE526I	ACGT	2 cut(s)	316, 356
Hsp92II	CATG	3 cut(s)	89, 427, 488
KpnI	GGTACC	1 cut(s)	391
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	2 cut(s)	271, 529
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	3 cut(s)	47, 153, 345
LweI	GCATC	2 cut(s)	496, 530
MaeI	CTAG	2 cut(s)	201, 348
MaeII	ACGT	2 cut(s)	316, 356
MalI	GATC	2 cut(s)	273, 531
MboI	GATC	2 cut(s)	271, 529
MboII	GAAGA	5 cut(s)	124, 127, 391, 409, 438
MluCI	AATT	1 cut(s)	514
MlyI	GAGTC	1 cut(s)	300
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	6 cut(s)	6, 85, 125, 149, 397, 496
MspI	CCGG	2 cut(s)	29, 263
MspR9I	CCNGG	2 cut(s)	146, 264
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	4 cut(s)	32, 41, 330, 518
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	2 cut(s)	271, 529
NlaIII	CATG	3 cut(s)	89, 427, 488
NlaIV	GGNNCC	3 cut(s)	366, 389, 408
NspI	RCATGY	1 cut(s)	427
PaqCI	CACCTGC	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	352
PciI	ACATGT	1 cut(s)	423
PflMI	CCANNNNNTGG	1 cut(s)	416
PinAI	ACCGGT	1 cut(s)	28
PkrI	GCNGC	4 cut(s)	37, 143, 335, 511
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PscI	ACATGT	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	3 cut(s)	366, 389, 408
PspPI	GGNCC	2 cut(s)	184, 245
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SatI	GCNGC	4 cut(s)	36, 142, 334, 510
Sau3AI	GATC	2 cut(s)	271, 529
Sau96I	GGNCC	2 cut(s)	184, 245
SchI	GAGTC	1 cut(s)	300
ScrFI	CCNGG	2 cut(s)	146, 264
SetI	ASST	9 cut(s)	40, 55, 136, 160, 319, 349, 359, 468, 529
SfaNI	GCATC	2 cut(s)	496, 530
SinI	GGWCC	1 cut(s)	245
Sse9I	AATT	1 cut(s)	514
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	2 cut(s)	44, 510
SspMI	CTAG	2 cut(s)	201, 348
StuI	AGGCCT	1 cut(s)	352
StyD4I	CCNGG	2 cut(s)	144, 262
TaaI	ACNGT	1 cut(s)	387
TaiI	ACGT	2 cut(s)	319, 359
TaqI	TCGA	1 cut(s)	278
TasI	AATT	1 cut(s)	514
TauI	GCSGC	1 cut(s)	512
TscAI	CASTG	2 cut(s)	255, 465
TseI	GCWGC	3 cut(s)	35, 141, 333
TspRI	CASTG	2 cut(s)	255, 465
Van91I	CCANNNNNTGG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	245
XceI	RCATGY	1 cut(s)	427
XspI	CTAG	2 cut(s)	201, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.