Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015769

Physical Location & Seq

Genomic Coordinates Forward (+)

44587765 .. 44588572

Gene Structure 808 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034539

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAAGGTTCTAGTTCATCTCTATTATGAAAAGTTCAAGGGGCTTTGTAGGGCGTATGAGTTATTTTCGCACGGGGCAGAGGTATATGACCAGTTCTTGGCACACCAGATGGTAAAACTTGTGGCGGCTGAGTGTACTATTTCAGCAATGATTCCGGCAATGATTAATACTGGGTCGAGGCTAGAAATGCGCGACGGTGAGTTTGGCAATGGAACTAGGGTTCCTGCATCAGCGTTGATGAGGTTATTCTTGGCTGTAGACTTGAATTCAATTCGAGGGTGGGAATTTGCTGTGGGTAATGCATTGCCCATGGAGGTTGTGAAACTGGTGGTGGAACATCCAAAGGAGGTGTTGCGTCTTCCAGACTTTGATCTGCCTAACAAGTATGGTGTAGTGTATATCTCATCCAAGAAAAGGGATCGTCCAAAAGGAAGCAAGAATACTTCGAAGCTAGTCTCTGGGCTGCCTAACCCTAAGAAGAAGCAATTTCCGAAGAAAGGAGAAAACATGGTGACGGAGGAAGTGGAAGTAGGAGACGGGGGAACTTATGAGGCTATGGAGGCAATGGATGGTGCAGTTGCTATGGAGGTTATGGAAGCAAATCGAGGAAACTTCTATGTTGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.34

Weight (kDa)

6.46

Isoelectric Point (pI)

18.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015769)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007775 RLG00000013915 RLG00000013916 RLG00000016936 RLG00000019193 RLG00000030532 RLG00000033599 RLG00000034539
rosa_multiflora	Rmu_sc0002378.1_g000019
rosa_roxburghii	Rroxscaffold_3G00219960 Rroxscaffold_4G00329080 Rroxscaffold_5G00343050
rosa_rugosa	Rorug02G0085600
rosa_samantha	Rh6AG180100 Rh6BG163900 Rh7AG490700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	97
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	1 cut(s)	192
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	1 cut(s)	426
AcsI	RAATTY	2 cut(s)	265, 284
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	3 cut(s)	97, 414, 497
AgsI	TTSAA	4 cut(s)	37, 265, 270, 623
AloI	GAACNNNNNNTCC	4 cut(s)	204, 205, 236, 237
AluBI	AGCT	1 cut(s)	451
AluI	AGCT	1 cut(s)	451
Alw26I	GTCTC	2 cut(s)	460, 528
AlwI	GGATC	1 cut(s)	426
ApeKI	GCWGC	1 cut(s)	463
ApoI	RAATTY	2 cut(s)	265, 284
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AseI	ATTAAT	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	192
AsuHPI	GGTGA	2 cut(s)	209, 523
AsuII	TTCGAA	1 cut(s)	446
BarI	GAAGNNNNNNTAC	2 cut(s)	424, 456
BbsI	GAAGAC	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	450
BccI	CCATC	2 cut(s)	103, 563
BcoDI	GTCTC	2 cut(s)	460, 528
BfaI	CTAG	4 cut(s)	11, 182, 216, 452
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	2 cut(s)	126, 464
BlsI	GCNGC	2 cut(s)	127, 465
BmiI	GGNNCC	1 cut(s)	222
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	236
BmuI	ACTGGG	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	350
Bpu14I	TTCGAA	1 cut(s)	446
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 414, 497
Bse1I	ACTGG	3 cut(s)	91, 175, 330
Bse3DI	GCAATG	5 cut(s)	153, 165, 214, 302, 570
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	3 cut(s)	337, 404, 574
BseLI	CCNNNNNNNGG	3 cut(s)	97, 414, 497
BseMI	GCAATG	5 cut(s)	153, 165, 214, 302, 570
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	3 cut(s)	91, 175, 330
BseXI	GCAGC	1 cut(s)	450
BsgI	GTGCAG	1 cut(s)	594
Bsh1236I	CGCG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	155
BslI	CCNNNNNNNGG	3 cut(s)	97, 414, 497
BsmAI	GTCTC	2 cut(s)	460, 528
BsmBI	CGTCTC	1 cut(s)	528
Bsp119I	TTCGAA	1 cut(s)	446
Bsp143I	GATC	2 cut(s)	370, 418
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	1 cut(s)	426
BspT104I	TTCGAA	1 cut(s)	446
BsrDI	GCAATG	5 cut(s)	153, 165, 214, 302, 570
BsrI	ACTGG	3 cut(s)	91, 175, 330
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	2 cut(s)	370, 418
BssT1I	CCWWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	197
BstBI	TTCGAA	1 cut(s)	446
BstDEI	CTNAG	2 cut(s)	129, 474
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	3 cut(s)	337, 404, 574
BstFNI	CGCG	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	373, 421
BstMAI	GTCTC	2 cut(s)	460, 528
BstMBI	GATC	2 cut(s)	370, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 560
BstSFI	CTRYAG	1 cut(s)	255
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	450
BstV2I	GAAGAC	1 cut(s)	350
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	3 cut(s)	337, 404, 574
CfoI	GCGC	1 cut(s)	192
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	2 cut(s)	310, 508
CviJI	RGCY	7 cut(s)	43, 128, 181, 254, 451, 463, 554
CviKI_1	RGCY	7 cut(s)	43, 128, 181, 254, 451, 463, 554
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	2 cut(s)	129, 474
DpnI	GATC	2 cut(s)	372, 420
DpnII	GATC	2 cut(s)	370, 418
Eco130I	CCWWGG	1 cut(s)	309
EcoRI	GAATTC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	528
FaeI	CATG	2 cut(s)	313, 511
FatI	CATG	2 cut(s)	309, 507
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	2 cut(s)	126, 464
FokI	GGATG	3 cut(s)	324, 391, 581
Fsp4HI	GCNGC	2 cut(s)	126, 464
FspBI	CTAG	4 cut(s)	11, 182, 216, 452
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	2 cut(s)	126, 464
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	313, 511
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	2 cut(s)	209, 523
Hpy166II	GTNNAC	2 cut(s)	135, 259
Hpy188I	TCNGA	1 cut(s)	492
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	2 cut(s)	135, 259
Hpy99I	CGWCG	1 cut(s)	197
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4V	TGCA	3 cut(s)	227, 302, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 560
HpyF3I	CTNAG	2 cut(s)	129, 474
Hsp92II	CATG	2 cut(s)	313, 511
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	370, 418
LpnPI	CCDG	8 cut(s)	104, 119, 156, 168, 237, 311, 375, 444
Lsp1109I	GCAGC	1 cut(s)	450
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	4 cut(s)	11, 182, 216, 452
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	2 cut(s)	372, 420
MboI	GATC	2 cut(s)	370, 418
MboII	GAAGA	3 cut(s)	350, 490, 505
MluCI	AATT	4 cut(s)	265, 270, 284, 485
Mph1103I	ATGCAT	1 cut(s)	304
MseI	TTAA	1 cut(s)	165
MspI	CCGG	1 cut(s)	155
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	187, 560
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	2 cut(s)	370, 418
NlaIII	CATG	2 cut(s)	313, 511
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	511
NsiI	ATGCAT	1 cut(s)	304
NspV	TTCGAA	1 cut(s)	446
PfeI	GAWTC	1 cut(s)	151
PflMI	CCANNNNNTGG	1 cut(s)	97
PkrI	GCNGC	2 cut(s)	127, 465
PshBI	ATTAAT	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	222
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	2 cut(s)	126, 464
Sau3AI	GATC	2 cut(s)	370, 418
SetI	ASST	7 cut(s)	9, 84, 245, 318, 351, 453, 591
SfaNI	GCATC	1 cut(s)	236
SfcI	CTRYAG	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	446
Sse9I	AATT	4 cut(s)	265, 270, 284, 485
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	4 cut(s)	11, 182, 216, 452
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	197
TaqI	TCGA	4 cut(s)	176, 274, 446, 604
TasI	AATT	4 cut(s)	265, 270, 284, 485
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	1 cut(s)	463
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	3 cut(s)	5, 17, 42
TspGWI	ACGGA	1 cut(s)	530
Van91I	CCANNNNNTGG	1 cut(s)	97
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	2 cut(s)	265, 284
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	4 cut(s)	11, 182, 216, 452
Zsp2I	ATGCAT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.