Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0015769

Physical Location & Seq

Genomic Coordinates Forward (+)

11392228 .. 11393403

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016936

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCGGCAAGTTTGTCAGCAGACCTGGCATTGACCGAAGCGGCAGTAGTGGATTTTGGATGGGTTCGGCAGCGGTGCAGAAGATGGTTTTTATTTGGTGGAGCGTATGCTATCAAGGAAACAGGGCAACGAGAAGAGTCTGCCGGGATTGATGGCCACGTTATGGGGCCTGCAAAACTGGGTTTCTACTCTTACCAGCGATACTCAGATAGGGCAGAGCATCCCGGCGTTGGGAGAGGTGTGGCGGTGATTCTGGTGGTTGTGGTTCCGGTTTCGCTTCCAAAGTTGTCGGGTAGTCATTGTGAGGCCCAGTCGGAGTTGGCTAGGGTTAGGAAGAAGCCCAAGTTGGCAGATAGGGCGGTAATTGGCCCACTGAGTTTTGAGCCGGGTTTTGATCTTTCGAATACAAATGGGGTCATTTACTTATCCCCCAAGAAACGTGGTCGTCCTAAAGGCAGTAAGAACATAGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.11

Weight (kDa)

9.9

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015769)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007775 RLG00000013915 RLG00000013916 RLG00000016936 RLG00000019193 RLG00000030532 RLG00000033599 RLG00000034539
rosa_multiflora	Rmu_sc0002378.1_g000019
rosa_roxburghii	Rroxscaffold_3G00219960 Rroxscaffold_4G00329080 Rroxscaffold_5G00343050
rosa_rugosa	Rorug02G0085600
rosa_samantha	Rh6AG180100 Rh6BG163900 Rh7AG490700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	163
AciI	CCGC	5 cut(s)	5, 41, 73, 245, 359
AcoI	YGGCCR	1 cut(s)	154
AfiI	CCNNNNNNNGG	3 cut(s)	163, 230, 231
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AoxI	GGCC	4 cut(s)	154, 167, 306, 367
ApeKI	GCWGC	1 cut(s)	70
AspS9I	GGNCC	3 cut(s)	167, 307, 368
AsuC2I	CCSGG	3 cut(s)	145, 225, 387
AsuHPI	GGTGA	1 cut(s)	259
AsuII	TTCGAA	1 cut(s)	401
BalI	TGGCCA	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	3 cut(s)	54, 78, 146
BciT130I	CCWGG	1 cut(s)	26
BcnI	CCSGG	3 cut(s)	145, 225, 387
BfaI	CTAG	1 cut(s)	324
BisI	GCNGC	3 cut(s)	6, 42, 71
BlsI	GCNGC	3 cut(s)	7, 43, 72
Bme1390I	CCNGG	4 cut(s)	26, 145, 225, 387
BmgT120I	GGNCC	3 cut(s)	167, 307, 368
BmiI	GGNNCC	2 cut(s)	168, 267
BmrFI	CCNGG	4 cut(s)	26, 145, 225, 387
BmrI	ACTGGG	2 cut(s)	188, 304
BmsI	GCATC	1 cut(s)	229
BmuI	ACTGGG	2 cut(s)	188, 304
Bpu14I	TTCGAA	1 cut(s)	401
BpuMI	CCSGG	3 cut(s)	145, 225, 387
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 230, 231
Bse1I	ACTGG	2 cut(s)	183, 310
BseBI	CCWGG	1 cut(s)	26
BseGI	GGATG	2 cut(s)	65, 220
BseLI	CCNNNNNNNGG	3 cut(s)	163, 230, 231
BseMII	CTCAG	2 cut(s)	219, 365
BseNI	ACTGG	2 cut(s)	183, 310
BseXI	GCAGC	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	97
BshFI	GGCC	4 cut(s)	156, 169, 308, 369
BsiSI	CCGG	4 cut(s)	144, 225, 269, 386
BslI	CCNNNNNNNGG	3 cut(s)	163, 230, 231
BsnI	GGCC	4 cut(s)	156, 169, 308, 369
Bsp119I	TTCGAA	1 cut(s)	401
Bsp143I	GATC	1 cut(s)	394
BspACI	CCGC	5 cut(s)	5, 41, 73, 245, 359
BspANI	GGCC	4 cut(s)	156, 169, 308, 369
BspCNI	CTCAG	2 cut(s)	218, 366
BspLI	GGNNCC	2 cut(s)	168, 267
BspT104I	TTCGAA	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	183, 310
BssMI	GATC	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	205, 374
BstF5I	GGATG	2 cut(s)	65, 220
BstKTI	GATC	1 cut(s)	397
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 356
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	4 cut(s)	24, 143, 223, 385
BstV1I	GCAGC	1 cut(s)	82
BsuRI	GGCC	4 cut(s)	156, 169, 308, 369
BtsCI	GGATG	2 cut(s)	65, 220
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	171
Cfr13I	GGNCC	3 cut(s)	167, 307, 368
CspCI	CAANNNNNGTGG	2 cut(s)	421, 456
CviJI	RGCY	8 cut(s)	156, 169, 308, 323, 340, 369, 385, 470
CviKI_1	RGCY	8 cut(s)	156, 169, 308, 323, 340, 369, 385, 470
DdeI	CTNAG	2 cut(s)	205, 374
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	24
FaiI	YATR	3 cut(s)	108, 164, 467
Fnu4HI	GCNGC	3 cut(s)	6, 42, 71
FokI	GGATG	2 cut(s)	72, 207
Fsp4HI	GCNGC	3 cut(s)	6, 42, 71
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	3 cut(s)	6, 42, 71
HaeIII	GGCC	4 cut(s)	156, 169, 308, 369
HapII	CCGG	4 cut(s)	144, 225, 269, 386
HinfI	GANTC	2 cut(s)	137, 250
HpaII	CCGG	4 cut(s)	144, 225, 269, 386
HphI	GGTGA	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	208, 316
HpyCH4IV	ACGT	2 cut(s)	159, 439
HpyCH4V	TGCA	2 cut(s)	78, 173
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 356
HpyF3I	CTNAG	2 cut(s)	205, 374
HpySE526I	ACGT	2 cut(s)	159, 439
Kzo9I	GATC	1 cut(s)	394
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	2 cut(s)	159, 439
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	3 cut(s)	93, 146, 346
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	1 cut(s)	363
MluNI	TGGCCA	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	2 cut(s)	230, 298
Mox20I	TGGCCA	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	156
Msp20I	TGGCCA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	4 cut(s)	144, 225, 269, 386
MspR9I	CCNGG	4 cut(s)	26, 145, 225, 387
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	26, 356
NciI	CCSGG	3 cut(s)	145, 225, 387
NdeII	GATC	1 cut(s)	394
NlaIV	GGNNCC	2 cut(s)	168, 267
NspV	TTCGAA	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	250
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	7, 43, 72
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	168, 267
PspPI	GGNCC	3 cut(s)	167, 307, 368
SatI	GCNGC	3 cut(s)	6, 42, 71
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	3 cut(s)	167, 307, 368
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	4 cut(s)	26, 145, 225, 387
SetI	ASST	4 cut(s)	27, 162, 241, 442
SfaNI	GCATC	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	401
Sse9I	AATT	1 cut(s)	363
SsiI	CCGC	5 cut(s)	5, 41, 73, 245, 359
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	4 cut(s)	24, 143, 223, 385
TaiI	ACGT	2 cut(s)	162, 442
TaqI	TCGA	1 cut(s)	401
TaqII	GACCGA	1 cut(s)	50
TasI	AATT	1 cut(s)	363
TauI	GCSGC	2 cut(s)	8, 44
TfiI	GAWTC	1 cut(s)	250
TscAI	CASTG	1 cut(s)	378
TseI	GCWGC	1 cut(s)	70
TspRI	CASTG	1 cut(s)	378
Van91I	CCANNNNNTGG	1 cut(s)	163
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.