Rh6BG163900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0015769
Physical Location & Seq
Forward (+)
26613384 .. 26613701
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG163900.1

Sequence Viewer

Length: 318 bp
ATGGTTGCTTCTAGGGGAGCGGTGGAGCCTCCATCGACAGTGTTACTGGTCTCACCTCCCAAACTGTCTGATAGTCGCCGTGAAGCCCAATTGGAGTTGACTAGAGCTGGCAAGAAGGCCAAGTTGGTGGATGGGGTCATTTCGGGCCCATTAAACTTTGAACCGAGCTTCAATCTCCCAAATACTAATGGAGTGATCTACTTATCCCCAAAGAAACAAGGTCGGCCTAAAGTAAGTGTTAATGAAGCAAAGCCTGGGTTAAGGATGCCAAAGCCCAAGAAGAAGAGGTTCCCTAAGAAGATCGAGGATTCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.47

Weight (kDa)

10.45

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 20
AciI CCGC 1 cut(s) 20
AgsI TTSAA 2 cut(s) 161, 172
AjnI CCWGG 1 cut(s) 253
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 2 cut(s) 107, 168
AluI AGCT 2 cut(s) 107, 168
Alw26I GTCTC 1 cut(s) 55
AoxI GGCC 3 cut(s) 117, 145, 224
ApaI GGGCCC 1 cut(s) 149
Asp700I GAANNNNTTC 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 145, 146
AsuHPI GGTGA 1 cut(s) 45
BaeGI GKGCMC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 149
BccI CCATC 2 cut(s) 40, 125
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 2 cut(s) 12, 102
Bme1390I CCNGG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 145, 146
BmiI GGNNCC 3 cut(s) 27, 147, 290
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 51
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 2 cut(s) 136, 270
BseNI ACTGG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 149
BshFI GGCC 3 cut(s) 119, 147, 226
BsmAI GTCTC 1 cut(s) 55
BsnI GGCC 3 cut(s) 119, 147, 226
Bso31I GGTCTC 1 cut(s) 55
Bsp120I GGGCCC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 2 cut(s) 195, 300
BspACI CCGC 1 cut(s) 20
BspANI GGCC 3 cut(s) 119, 147, 226
BspLI GGNNCC 3 cut(s) 27, 147, 290
BspTNI GGTCTC 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 2 cut(s) 195, 300
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 40, 66
Bst6I CTCTTC 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 136, 270
BstKTI GATC 2 cut(s) 198, 303
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 2 cut(s) 195, 300
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 127
BsuRI GGCC 3 cut(s) 119, 147, 226
BtsCI GGATG 2 cut(s) 136, 270
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 145, 146
CviJI RGCY 9 cut(s) 28, 86, 107, 119, 147, 168, 226, 253, 274
CviKI_1 RGCY 9 cut(s) 28, 86, 107, 119, 147, 168, 226, 253, 274
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 197, 302
DpnII GATC 2 cut(s) 195, 300
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Eco24I GRGCYC 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 149
FokI GGATG 2 cut(s) 143, 277
FriOI GRGCYC 1 cut(s) 149
FspBI CTAG 2 cut(s) 12, 102
HaeIII GGCC 3 cut(s) 119, 147, 226
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 1 cut(s) 308
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 99
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 2 cut(s) 40, 66
HpyF3I CTNAG 1 cut(s) 294
Kzo9I GATC 2 cut(s) 195, 300
LmnI GCTCC 2 cut(s) 17, 25
LpnPI CCDG 4 cut(s) 32, 93, 240, 267
LweI GCATC 1 cut(s) 255
MaeI CTAG 2 cut(s) 12, 102
MaeIII GTNAC 1 cut(s) 42
MalI GATC 2 cut(s) 197, 302
MbiI CCGCTC 1 cut(s) 20
MboI GATC 2 cut(s) 195, 300
MboII GAAGA 3 cut(s) 292, 295, 310
MfeI CAATTG 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 1 cut(s) 89
MnlI CCTC 4 cut(s) 39, 66, 279, 298
MroXI GAANNNNTTC 1 cut(s) 287
MseI TTAA 3 cut(s) 152, 240, 260
MspR9I CCNGG 1 cut(s) 255
MunI CAATTG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 255
NdeII GATC 2 cut(s) 195, 300
NlaIV GGNNCC 3 cut(s) 27, 147, 290
PdmI GAANNNNTTC 1 cut(s) 287
PfeI GAWTC 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 3 cut(s) 27, 147, 290
PspOMI GGGCCC 1 cut(s) 145
PspPI GGNCC 2 cut(s) 145, 146
SaqAI TTAA 3 cut(s) 152, 240, 260
Sau3AI GATC 2 cut(s) 195, 300
Sau96I GGNCC 2 cut(s) 145, 146
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 1 cut(s) 149
SetI ASST 5 cut(s) 58, 109, 170, 223, 290
SfaNI GCATC 1 cut(s) 255
Sse9I AATT 1 cut(s) 89
SsiI CCGC 1 cut(s) 20
SspMI CTAG 2 cut(s) 12, 102
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 40, 66
TaqI TCGA 2 cut(s) 35, 303
TasI AATT 1 cut(s) 89
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 3 cut(s) 152, 240, 260
Tru9I TTAA 3 cut(s) 152, 240, 260
TscAI CASTG 1 cut(s) 45
TspDTI ATGAA 1 cut(s) 258
TspRI CASTG 1 cut(s) 45
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 2 cut(s) 12, 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.