RLG00000019193

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015769
Physical Location & Seq
Forward (+)
48035898 .. 48038588
2691 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019193

Sequence Viewer

Length: 705 bp
ATGGCTGAGGAGATGGCGGCACGCCTCTCGGCCGCTTTGGCGTTGACCGAGGCGGCGGTGGTTGATTTTGGGTTATTAGGATCAACAACAATGGCGGAGGATGAATTTTACTTGGTTGACCAATTTCTTTCGAGGAAGCCCAATGAAGATAAAGGGCTGCCTGGCTTGATGGCCACGTATTGGGGACTAAAAAACCTGTGGGTTGGAGAAGCAGAAGATGGTGGTACGTGGTGGCTTCGGAGGCGGGGAAGGGGGCCATTGAGTCGTTTGTTCAAATCGACAGATTTGAGTACGATCCCAAGCTGGGATACAGTGGTGGCATTTAGAGTGGTGGTGAAAACAGCCCTGGTGGTGACACAAACTCCAGCTACTAGGATTTCGGGGCTCTGTAGAGAGGCCCAAACTGCTTTGGACCGGGCTGATAAGAAGCCCAAGTTGGTGGATGGTACAAGCTCAGTACCGTTGAATTTTGAACCTGGTTTTGATCTCCCTAACACCAATGGGGTGATTTACTTGTCCCCTAAGATACGAGGACGTCCAAAAGGTAGTAAGAATGTAGCTAAACCTATCGTTGGAGTTACCAAACCCAAGAAGAGGCGATTCCCTAAAAAGAGAGCGGAGAAGATGTCGGAGGAGGCGGTGGTGACCTCGTCTTCAATTAAGGAAGAACTGGAGGGGGTTGATCTCCCTTTCATGGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

25.76

Weight (kDa)

9.25

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 538
AccB7I CCANNNNNTGG 1 cut(s) 180
AccBSI CCGCTC 1 cut(s) 617
AciI CCGC 8 cut(s) 17, 33, 53, 56, 95, 244, 617, 638
AclWI GGATC 2 cut(s) 88, 289
AcoI YGGCCR 2 cut(s) 30, 171
AcsI RAATTY 2 cut(s) 104, 466
AcyI GRCGYC 1 cut(s) 535
AfaI GTAC 4 cut(s) 226, 292, 448, 459
AfiI CCNNNNNNNGG 5 cut(s) 180, 304, 572, 594, 694
AgsI TTSAA 4 cut(s) 274, 466, 473, 657
AjnI CCWGG 3 cut(s) 160, 345, 475
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 4 cut(s) 303, 368, 453, 560
AluI AGCT 4 cut(s) 303, 368, 453, 560
AlwI GGATC 2 cut(s) 88, 289
AoxI GGCC 4 cut(s) 30, 171, 254, 396
ApeKI GCWGC 1 cut(s) 157
ApoI RAATTY 2 cut(s) 104, 466
AspS9I GGNCC 3 cut(s) 254, 397, 412
AsuC2I CCSGG 1 cut(s) 416
AsuHPI GGTGA 4 cut(s) 346, 364, 517, 655
AvaII GGWCC 1 cut(s) 412
BaeI ACNNNNGTAYC 2 cut(s) 300, 333
BalI TGGCCA 1 cut(s) 173
BanII GRGCYC 1 cut(s) 387
BbsI GAAGAC 1 cut(s) 645
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 1 cut(s) 144
BccI CCATC 4 cut(s) 7, 163, 212, 437
BcgI CGANNNNNNTGC 2 cut(s) 9, 43
BciT130I CCWGG 3 cut(s) 162, 347, 477
BciVI GTATCC 1 cut(s) 301
BcnI CCSGG 1 cut(s) 416
BfaI CTAG 1 cut(s) 372
BfmI CTRYAG 1 cut(s) 388
BfuI GTATCC 1 cut(s) 301
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 4 cut(s) 18, 33, 54, 158
BlsI GCNGC 4 cut(s) 19, 34, 55, 159
Bme1390I CCNGG 4 cut(s) 162, 347, 416, 477
Bme18I GGWCC 1 cut(s) 412
BmgT120I GGNCC 3 cut(s) 254, 397, 412
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 4 cut(s) 162, 347, 416, 477
BpiI GAAGAC 1 cut(s) 645
BpmI CTGGAG 2 cut(s) 348, 692
Bpu10I CCTNAGC 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 416
BsaAI YACGTR 2 cut(s) 177, 228
BsaHI GRCGYC 1 cut(s) 535
BsaJI CCNNGG 2 cut(s) 48, 345
BsaXI ACNNNNNCTCC 4 cut(s) 346, 376, 611, 641
Bsc4I CCNNNNNNNGG 5 cut(s) 180, 304, 572, 594, 694
Bse1I ACTGG 1 cut(s) 675
BseBI CCWGG 3 cut(s) 162, 347, 477
BseDI CCNNGG 2 cut(s) 48, 345
BseGI GGATG 2 cut(s) 106, 448
BseLI CCNNNNNNNGG 5 cut(s) 180, 304, 572, 594, 694
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 675
BseRI GAGGAG 2 cut(s) 23, 647
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 144
BseYI CCCAGC 1 cut(s) 303
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 4 cut(s) 32, 173, 256, 398
BsiEI CGRYCG 1 cut(s) 33
BsiSI CCGG 1 cut(s) 415
BslFI GGGAC 2 cut(s) 198, 502
BslI CCNNNNNNNGG 5 cut(s) 180, 304, 572, 594, 694
BsmFI GGGAC 2 cut(s) 198, 502
BsnI GGCC 4 cut(s) 32, 173, 256, 398
Bsp1286I GDGCHC 1 cut(s) 387
Bsp143I GATC 4 cut(s) 80, 294, 484, 682
BspACI CCGC 8 cut(s) 17, 33, 53, 56, 95, 244, 617, 638
BspANI GGCC 4 cut(s) 32, 173, 256, 398
BspCNI CTCAG 1 cut(s) 467
BspLI GGNNCC 1 cut(s) 255
BspPI GGATC 2 cut(s) 88, 289
BsrBI CCGCTC 1 cut(s) 617
BsrI ACTGG 1 cut(s) 675
BssECI CCNNGG 2 cut(s) 48, 345
BssMI GATC 4 cut(s) 80, 294, 484, 682
BssNI GRCGYC 1 cut(s) 535
Bst2UI CCWGG 3 cut(s) 162, 347, 477
Bst4CI ACNGT 2 cut(s) 313, 462
Bst6I CTCTTC 1 cut(s) 587
BstACI GRCGYC 1 cut(s) 535
BstBAI YACGTR 2 cut(s) 177, 228
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 6, 454, 522
BstEII GGTNACC 1 cut(s) 643
BstF5I GGATG 2 cut(s) 106, 448
BstKTI GATC 4 cut(s) 83, 297, 487, 685
BstMBI GATC 4 cut(s) 80, 294, 484, 682
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 3 cut(s) 38, 241, 404
BstNI CCWGG 3 cut(s) 162, 347, 477
BstPI GGTNACC 1 cut(s) 643
BstSCI CCNGG 4 cut(s) 160, 345, 414, 475
BstSFI CTRYAG 1 cut(s) 388
BstV1I GCAGC 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 645
BstXI CCANNNNNNTGG 1 cut(s) 439
BstZI CGGCCG 1 cut(s) 30
BsuI GTATCC 1 cut(s) 301
BsuRI GGCC 4 cut(s) 32, 173, 256, 398
BtsCI GGATG 2 cut(s) 106, 448
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 22
Cfr13I GGNCC 3 cut(s) 254, 397, 412
CsiI ACCWGGT 1 cut(s) 475
Csp6I GTAC 4 cut(s) 225, 291, 447, 458
CviAII CATG 1 cut(s) 694
CviQI GTAC 4 cut(s) 225, 291, 447, 458
DdeI CTNAG 3 cut(s) 6, 454, 522
DpnI GATC 4 cut(s) 82, 296, 486, 684
DpnII GATC 4 cut(s) 80, 294, 484, 682
EaeI YGGCCR 2 cut(s) 30, 171
EagI CGGCCG 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 587
EarI CTCTTC 1 cut(s) 587
EciI GGCGGA 1 cut(s) 110
EclXI CGGCCG 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 387
Eco47I GGWCC 1 cut(s) 412
Eco52I CGGCCG 1 cut(s) 30
Eco91I GGTNACC 1 cut(s) 643
EcoO65I GGTNACC 1 cut(s) 643
EcoRII CCWGG 3 cut(s) 160, 345, 475
EcoT38I GRGCYC 1 cut(s) 387
FaeI CATG 1 cut(s) 697
FaiI YATR 1 cut(s) 695
FaqI GGGAC 2 cut(s) 198, 502
FatI CATG 1 cut(s) 693
FauI CCCGC 1 cut(s) 237
Fnu4HI GCNGC 4 cut(s) 18, 33, 54, 158
FokI GGATG 2 cut(s) 113, 455
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 4 cut(s) 18, 33, 54, 158
FspBI CTAG 1 cut(s) 372
GluI GCNGC 4 cut(s) 18, 33, 54, 158
GsaI CCCAGC 1 cut(s) 307
GsuI CTGGAG 2 cut(s) 348, 692
HaeIII GGCC 4 cut(s) 32, 173, 256, 398
HapII CCGG 1 cut(s) 415
Hin1I GRCGYC 1 cut(s) 535
Hin1II CATG 1 cut(s) 697
HincII GTYRAC 2 cut(s) 45, 118
HindII GTYRAC 2 cut(s) 45, 118
HinfI GANTC 2 cut(s) 262, 600
HpaII CCGG 1 cut(s) 415
HphI GGTGA 4 cut(s) 346, 364, 517, 655
Hpy166II GTNNAC 2 cut(s) 45, 118
Hpy188I TCNGA 2 cut(s) 240, 631
Hpy8I GTNNAC 2 cut(s) 45, 118
HpyAV CCTTC 1 cut(s) 243
HpyCH4III ACNGT 2 cut(s) 313, 462
HpyCH4IV ACGT 3 cut(s) 176, 227, 535
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 241, 404
HpyF3I CTNAG 3 cut(s) 6, 454, 522
HpySE526I ACGT 3 cut(s) 176, 227, 535
Hsp92I GRCGYC 1 cut(s) 535
Hsp92II CATG 1 cut(s) 697
Kzo9I GATC 4 cut(s) 80, 294, 484, 682
Lsp1109I GCAGC 1 cut(s) 144
MabI ACCWGGT 1 cut(s) 475
MaeI CTAG 1 cut(s) 372
MaeII ACGT 3 cut(s) 176, 227, 535
MaeIII GTNAC 3 cut(s) 352, 577, 643
MalI GATC 4 cut(s) 82, 296, 486, 684
MbiI CCGCTC 1 cut(s) 617
MboI GATC 4 cut(s) 80, 294, 484, 682
MboII GAAGA 6 cut(s) 158, 227, 604, 634, 645, 677
MhlI GDGCHC 1 cut(s) 387
MlsI TGGCCA 1 cut(s) 173
MluCI AATT 4 cut(s) 104, 122, 466, 657
MluNI TGGCCA 1 cut(s) 173
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 3 cut(s) 184, 553, 609
Mox20I TGGCCA 1 cut(s) 173
MscI TGGCCA 1 cut(s) 173
MseI TTAA 1 cut(s) 660
Msp20I TGGCCA 1 cut(s) 173
MspI CCGG 1 cut(s) 415
MspR9I CCNGG 4 cut(s) 162, 347, 416, 477
MvaI CCWGG 3 cut(s) 162, 347, 477
MwoI GCNNNNNNNGC 3 cut(s) 38, 241, 404
NciI CCSGG 1 cut(s) 416
NdeII GATC 4 cut(s) 80, 294, 484, 682
NlaIII CATG 1 cut(s) 697
NlaIV GGNNCC 1 cut(s) 255
NmeAIII GCCGAG 1 cut(s) 8
NmuCI GTSAC 2 cut(s) 352, 643
PfeI GAWTC 1 cut(s) 600
PflFI GACNNNGTC 1 cut(s) 649
PflMI CCANNNNNTGG 1 cut(s) 180
PkrI GCNGC 4 cut(s) 19, 34, 55, 159
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
Ppu21I YACGTR 2 cut(s) 177, 228
Psp6I CCWGG 3 cut(s) 160, 345, 475
PspEI GGTNACC 1 cut(s) 643
PspFI CCCAGC 1 cut(s) 303
PspGI CCWGG 3 cut(s) 160, 345, 475
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 3 cut(s) 254, 397, 412
PsyI GACNNNGTC 1 cut(s) 649
RsaI GTAC 4 cut(s) 226, 292, 448, 459
RsaNI GTAC 4 cut(s) 225, 291, 447, 458
SaqAI TTAA 1 cut(s) 660
SatI GCNGC 4 cut(s) 18, 33, 54, 158
Sau3AI GATC 4 cut(s) 80, 294, 484, 682
Sau96I GGNCC 3 cut(s) 254, 397, 412
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 4 cut(s) 162, 347, 416, 477
SduI GDGCHC 1 cut(s) 387
SexAI ACCWGGT 1 cut(s) 475
SfcI CTRYAG 1 cut(s) 388
SinI GGWCC 1 cut(s) 412
Sse9I AATT 4 cut(s) 104, 122, 466, 657
SsiI CCGC 8 cut(s) 17, 33, 53, 56, 95, 244, 617, 638
SspMI CTAG 1 cut(s) 372
StyD4I CCNGG 4 cut(s) 160, 345, 414, 475
TaaI ACNGT 2 cut(s) 313, 462
TaiI ACGT 3 cut(s) 179, 230, 538
TaqI TCGA 2 cut(s) 131, 278
TaqII GACCGA 1 cut(s) 62
TasI AATT 4 cut(s) 104, 122, 466, 657
TauI GCSGC 3 cut(s) 20, 35, 56
TfiI GAWTC 1 cut(s) 600
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 2 cut(s) 352, 643
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 2 cut(s) 352, 643
TspDTI ATGAA 3 cut(s) 117, 159, 682
TspRI CASTG 1 cut(s) 318
Tth111I GACNNNGTC 1 cut(s) 649
Van91I CCANNNNNTGG 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 412
XapI RAATTY 2 cut(s) 104, 466
XspI CTAG 1 cut(s) 372
ZraI GACGTC 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.