RLG00000013916

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015769
Physical Location & Seq
Forward (+)
44229969 .. 44230712
744 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013916

Sequence Viewer

Length: 648 bp
ATGATAGAAAGGAGGAGGACAAAGCCAACCCATACAGCCAAGAGAAGGCGACGACGGATAAGGCGACCCAAGAGGCCGGCAGTCCCAAACCCATGCACGATTAGTTTGACGATTAGGACACAACATAAATCGATCCAGAGGGAGAAACAAGCACCGGTAGCAACTCTGGCGGTGGTAGGTTCGGCCTTAGGAATGCCATCCTCTGCTGTGCATGGTAGTGGGGCAGGGTCAACAGGGAAGAAGAAGTTGGGGGCGGTGCTGGGATCTACTGTACGTGTTGTTGGGGCTTCGTCCTCCACCAGTGATGTTCGGAGAGGTCAGAGCAGCCCGGCATTGGGAGGTGCGCCGTTGGGCCGTCTGTTCAAGGTAGCTGATCTGGATGCGATTCCAAGCTGGAACTCTGTGGTGGCTTCTAGAGGGATGGCAGAAGTGTTGGCGGCTGTGATTTCGGTCTCGCCCCCAAACTTGTCGGGTAGTCGCAGGGAGGCCCAGTCAGAGTTGGCTAGGGTTGGAAATAAGCCGAAGTTGGCAGATGGGGTTCTATCTGGCCCACTGAGTTTTGAGCCGGGGTTTGATCTCCCAAATACAAATGGGGTCATTTACTTATCCCCAAGAAATGTGGTCGCCCTAAAGGCAGCAGGAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

22.46

Weight (kDa)

11.78

Isoelectric Point (pI)

64.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 170, 254, 437
AclWI GGATC 2 cut(s) 127, 271
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 3 cut(s) 45, 334, 335
AflIII ACRYGT 1 cut(s) 274
AgeI ACCGGT 1 cut(s) 154
AgsI TTSAA 1 cut(s) 364
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 2 cut(s) 371, 393
AluI AGCT 2 cut(s) 371, 393
Alw26I GTCTC 1 cut(s) 457
AlwI GGATC 2 cut(s) 127, 271
AoxI GGCC 5 cut(s) 74, 183, 352, 486, 547
ApeKI GCWGC 2 cut(s) 324, 635
AsiGI ACCGGT 1 cut(s) 154
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 3 cut(s) 352, 487, 548
AsuC2I CCSGG 2 cut(s) 329, 567
AxyI CCTNAGG 1 cut(s) 187
BbvI GCAGC 1 cut(s) 336
BccI CCATC 3 cut(s) 205, 415, 527
BceAI ACGGC 2 cut(s) 331, 339
BcnI CCSGG 2 cut(s) 329, 567
BcoDI GTCTC 1 cut(s) 457
BfaI CTAG 2 cut(s) 414, 504
BglI GCCNNNNNGGC 1 cut(s) 632
BisI GCNGC 3 cut(s) 325, 438, 636
BlsI GCNGC 3 cut(s) 326, 439, 637
Bme1390I CCNGG 2 cut(s) 329, 567
BmgT120I GGNCC 3 cut(s) 352, 487, 548
BmrFI CCNGG 2 cut(s) 329, 567
BmrI ACTGGG 1 cut(s) 484
BmsI GCATC 1 cut(s) 370
BmuI ACTGGG 1 cut(s) 484
BpuMI CCSGG 2 cut(s) 329, 567
Bsa29I ATCGAT 1 cut(s) 131
BsaAI YACGTR 1 cut(s) 275
BsaI GGTCTC 1 cut(s) 457
BsaJI CCNNGG 1 cut(s) 566
BsaWI WCCGGW 1 cut(s) 154
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 334, 335
Bse118I RCCGGY 2 cut(s) 76, 154
Bse1I ACTGG 2 cut(s) 300, 490
Bse21I CCTNAGG 1 cut(s) 187
BseCI ATCGAT 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 566
BseGI GGATG 3 cut(s) 197, 385, 426
BseLI CCNNNNNNNGG 3 cut(s) 45, 334, 335
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 2 cut(s) 300, 490
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 336
BseYI CCCAGC 1 cut(s) 259
BshFI GGCC 5 cut(s) 76, 185, 354, 488, 549
BshTI ACCGGT 1 cut(s) 154
BshVI ATCGAT 1 cut(s) 131
BsiSI CCGG 4 cut(s) 77, 155, 329, 566
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 3 cut(s) 45, 334, 335
BsmAI GTCTC 1 cut(s) 457
BsmFI GGGAC 1 cut(s) 68
BsmI GAATGC 1 cut(s) 198
BsnI GGCC 5 cut(s) 76, 185, 354, 488, 549
Bso31I GGTCTC 1 cut(s) 457
Bsp143I GATC 4 cut(s) 132, 263, 373, 574
BspACI CCGC 3 cut(s) 170, 254, 437
BspANI GGCC 5 cut(s) 76, 185, 354, 488, 549
BspCNI CTCAG 1 cut(s) 546
BspDI ATCGAT 1 cut(s) 131
BspPI GGATC 2 cut(s) 127, 271
BspTNI GGTCTC 1 cut(s) 457
BsrFI RCCGGY 2 cut(s) 76, 154
BsrI ACTGG 2 cut(s) 300, 490
BssAI RCCGGY 2 cut(s) 76, 154
BssECI CCNNGG 1 cut(s) 566
BssMI GATC 4 cut(s) 132, 263, 373, 574
Bst4CI ACNGT 1 cut(s) 271
BstBAI YACGTR 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 187, 554
BstF5I GGATG 3 cut(s) 197, 385, 426
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 4 cut(s) 135, 266, 376, 577
BstMAI GTCTC 1 cut(s) 457
BstMBI GATC 4 cut(s) 132, 263, 373, 574
BstMWI GCNNNNNNNGC 3 cut(s) 158, 167, 632
BstSCI CCNGG 2 cut(s) 327, 565
BstV1I GCAGC 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
Bsu15I ATCGAT 1 cut(s) 131
Bsu36I CCTNAGG 1 cut(s) 187
BsuRI GGCC 5 cut(s) 76, 185, 354, 488, 549
BsuTUI ATCGAT 1 cut(s) 131
BtsCI GGATG 3 cut(s) 197, 385, 426
BtsIMutI CAGTG 2 cut(s) 307, 551
Cac8I GCNNGC 1 cut(s) 78
CfoI GCGC 1 cut(s) 346
Cfr10I RCCGGY 2 cut(s) 76, 154
Cfr13I GGNCC 3 cut(s) 352, 487, 548
ClaI ATCGAT 1 cut(s) 131
Csp6I GTAC 1 cut(s) 272
CspAI ACCGGT 1 cut(s) 154
CspCI CAANNNNNGTGG 2 cut(s) 600, 635
CviAII CATG 2 cut(s) 93, 212
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 2 cut(s) 187, 554
DpnI GATC 4 cut(s) 134, 265, 375, 576
DpnII GATC 4 cut(s) 132, 263, 373, 574
Eco31I GGTCTC 1 cut(s) 457
Eco81I CCTNAGG 1 cut(s) 187
FaeI CATG 2 cut(s) 96, 215
FaiI YATR 5 cut(s) 33, 94, 126, 213, 646
FaqI GGGAC 1 cut(s) 68
FatI CATG 2 cut(s) 92, 211
Fnu4HI GCNGC 3 cut(s) 325, 438, 636
FokI GGATG 3 cut(s) 184, 392, 433
Fsp4HI GCNGC 3 cut(s) 325, 438, 636
FspBI CTAG 2 cut(s) 414, 504
GlaI GCGC 1 cut(s) 345
GluI GCNGC 3 cut(s) 325, 438, 636
GsaI CCCAGC 1 cut(s) 263
HaeIII GGCC 5 cut(s) 76, 185, 354, 488, 549
HapII CCGG 4 cut(s) 77, 155, 329, 566
HhaI GCGC 1 cut(s) 346
Hin1II CATG 2 cut(s) 96, 215
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HinfI GANTC 1 cut(s) 385
HpaII CCGG 4 cut(s) 77, 155, 329, 566
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 3 cut(s) 312, 321, 496
Hpy188III TCNNGA 3 cut(s) 136, 377, 414
Hpy8I GTNNAC 1 cut(s) 231
Hpy99I CGWCG 2 cut(s) 54, 57
HpyAV CCTTC 1 cut(s) 39
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 2 cut(s) 96, 211
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 167, 632
HpyF3I CTNAG 2 cut(s) 187, 554
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 2 cut(s) 96, 215
HspAI GCGC 1 cut(s) 344
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Kzo9I GATC 4 cut(s) 132, 263, 373, 574
Lsp1109I GCAGC 1 cut(s) 336
LweI GCATC 1 cut(s) 370
MaeI CTAG 2 cut(s) 414, 504
MaeII ACGT 1 cut(s) 274
MalI GATC 4 cut(s) 134, 265, 375, 576
MboI GATC 4 cut(s) 132, 263, 373, 574
MboII GAAGA 2 cut(s) 250, 253
MflI RGATCY 1 cut(s) 263
MmeI TCCRAC 1 cut(s) 490
MroNI GCCGGC 1 cut(s) 76
MslI CAYNNNNRTG 1 cut(s) 216
MspI CCGG 4 cut(s) 77, 155, 329, 566
MspR9I CCNGG 2 cut(s) 329, 567
Mva1269I GAATGC 1 cut(s) 198
MwoI GCNNNNNNNGC 3 cut(s) 158, 167, 632
NaeI GCCGGC 1 cut(s) 78
NciI CCSGG 2 cut(s) 329, 567
NdeII GATC 4 cut(s) 132, 263, 373, 574
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 2 cut(s) 96, 215
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PctI GAATGC 1 cut(s) 198
PdiI GCCGGC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 385
PinAI ACCGGT 1 cut(s) 154
PkrI GCNGC 3 cut(s) 326, 439, 637
Ppu21I YACGTR 1 cut(s) 275
PspFI CCCAGC 1 cut(s) 259
PspPI GGNCC 3 cut(s) 352, 487, 548
PsuI RGATCY 1 cut(s) 263
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
RseI CAYNNNNRTG 1 cut(s) 216
SatI GCNGC 3 cut(s) 325, 438, 636
Sau3AI GATC 4 cut(s) 132, 263, 373, 574
Sau96I GGNCC 3 cut(s) 352, 487, 548
ScrFI CCNGG 2 cut(s) 329, 567
SetI ASST 7 cut(s) 181, 277, 319, 343, 369, 373, 395
SfaNI GCATC 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 216
SsiI CCGC 3 cut(s) 170, 254, 437
SspMI CTAG 2 cut(s) 414, 504
StyD4I CCNGG 2 cut(s) 327, 565
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 1 cut(s) 277
TaqI TCGA 1 cut(s) 131
TaqII GACCGA 1 cut(s) 439
TauI GCSGC 1 cut(s) 440
TfiI GAWTC 1 cut(s) 385
TscAI CASTG 2 cut(s) 307, 558
TseI GCWGC 2 cut(s) 324, 635
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 2 cut(s) 307, 558
XbaI TCTAGA 1 cut(s) 413
XspI CTAG 2 cut(s) 414, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.