RLG00000033599

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015769
Physical Location & Seq
Reverse (-)
29530213 .. 29533431
3219 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033599

Sequence Viewer

Length: 1032 bp
ATGGTGGCACGTTTGTCAACAGCGCTGGCGTTAATGGAGGCAGCAGTGGTGGATTTTGGTTCGCTGGGTTCGGCAGCGGTGGCAGAGGATGGATATTATCTGGTGGGTTGTATGCTATCCAAAAAACCTAATGATGAGAAGAGCCTGCCGAGTATGATGGCGACCTTCTGGGGGTTGCAGAATAGGCTGGTCCAGCGAGAAAAGCAGGTTCCGGCAGTGGCACTAACAATGGTGGCACCGTGCTTGGGGGCGTTGTCCTCTGGTTTGCTTGGTAATGGGTCGCCGGTTTCTCGAGGCAAGGAGAAACAGGTTTTGGAAGTGGTTGCAACAAGGGTTGTGATTGCGGGGACAAGGGGAACAGTGGCACCTCCATCGGTGGTGGAACTGGCTTCCCTGGTTTCACCTCCTAATTTGTCTGGGAGTTGCCGTGAAGCCCAGTCGGAATTGGTTAGGGTTGGCAAGAAGGCTAAGTTGGGGGAAGGAGTTGTCTCAGATCCATTGACCTTTGAACCAGGCTTCGATCTTCCAAATACTAATGGGGTGATCTACCTATCCCCAAAGAAGCAGGGACGGCCCAAAGGTAGCAGAAATTTAGCGAAGGCTGGGCTAGGGATGCCAAAACCTAAAAAGAAGAGGTTTCCCAAGAAGACTGGGGAATCCAAGGAGATGGAGGTGGGGGTGAGTTCATCTTCCTCAGAGCCAGTGTATGAGAAGGCCATTGGGTCCGAGGTTAGAGAAACAGTGGATGGGGCTAATTCTCCGGAATTGACACCAGGAGCAAATAAGGGTACCAGCGCCGTCACCCTCGACCCCATGACTTTCAGTAAAAGAAACTGCCCTACTGCTATAGCCATCATTGATCTCCAAGTCGTCGCCGTCCTAGCCCCAAAAAGCCGGGTCCCAAACTCGGATCCATTTGCACAGTCAGCGCCGATCACTGAACCTCAAAGCCCACGACCAGCCCCACAGCGACCCCGTCGCCTGCATAATCCCTTGTTGCCAAACCGCCTGCAAATACATGTAGATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

36.2

Weight (kDa)

9.65

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 196
Acc65I GGTACC 1 cut(s) 788
AccB1I GGYRCC 3 cut(s) 235, 364, 788
AccIII TCCGGA 1 cut(s) 760
AciI CCGC 3 cut(s) 77, 344, 1006
AclWI GGATC 4 cut(s) 488, 905, 918, 1019
AcsI RAATTY 1 cut(s) 589
AfaI GTAC 1 cut(s) 790
AfeI AGCGCT 1 cut(s) 24
AfiI CCNNNNNNNGG 3 cut(s) 171, 245, 907
AflIII ACRYGT 1 cut(s) 1018
AgsI TTSAA 1 cut(s) 509
AjnI CCWGG 3 cut(s) 393, 511, 772
AjuI GAANNNNNNNTTGG 4 cut(s) 296, 328, 455, 487
Alw26I GTCTC 1 cut(s) 493
AlwI GGATC 4 cut(s) 488, 905, 918, 1019
Ama87I CYCGRG 1 cut(s) 291
Aor13HI TCCGGA 1 cut(s) 760
Aor51HI AGCGCT 1 cut(s) 24
AoxI GGCC 2 cut(s) 572, 714
ApeKI GCWGC 2 cut(s) 41, 74
ApoI RAATTY 1 cut(s) 589
Asp718I GGTACC 1 cut(s) 788
AspLEI GCGC 3 cut(s) 25, 797, 931
AspS9I GGNCC 4 cut(s) 190, 573, 723, 898
AsuC2I CCSGG 1 cut(s) 896
AsuHPI GGTGA 4 cut(s) 393, 553, 691, 793
AvaI CYCGRG 1 cut(s) 291
AvaII GGWCC 3 cut(s) 190, 723, 898
BamHI GGATCC 1 cut(s) 910
BanI GGYRCC 3 cut(s) 235, 364, 788
BbsI GAAGAC 1 cut(s) 653
BbvI GCAGC 2 cut(s) 53, 86
BccI CCATC 6 cut(s) 83, 151, 379, 661, 740, 860
BceAI ACGGC 4 cut(s) 411, 587, 782, 860
BcgI CGANNNNNNTGC 2 cut(s) 354, 388
BciT130I CCWGG 3 cut(s) 395, 513, 774
BcnI CCSGG 1 cut(s) 896
BcoDI GTCTC 1 cut(s) 493
BfaI CTAG 2 cut(s) 608, 881
BfmI CTRYAG 1 cut(s) 846
BfoI RGCGCY 3 cut(s) 26, 798, 932
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 2 cut(s) 42, 75
BlsI GCNGC 2 cut(s) 43, 76
Bme1390I CCNGG 4 cut(s) 395, 513, 774, 896
Bme18I GGWCC 3 cut(s) 190, 723, 898
BmeT110I CYCGRG 1 cut(s) 291
BmgT120I GGNCC 4 cut(s) 190, 573, 723, 898
BmiI GGNNCC 8 cut(s) 210, 237, 366, 724, 790, 899, 900, 912
BmrFI CCNGG 4 cut(s) 395, 513, 774, 896
BmrI ACTGGG 2 cut(s) 430, 660
BmsI GCATC 1 cut(s) 603
BmuI ACTGGG 2 cut(s) 430, 660
BpiI GAAGAC 1 cut(s) 653
BpuMI CCSGG 1 cut(s) 896
BsaJI CCNNGG 3 cut(s) 393, 660, 726
BsaWI WCCGGW 1 cut(s) 760
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 3 cut(s) 171, 245, 907
Bse118I RCCGGY 1 cut(s) 283
Bse1I ACTGG 4 cut(s) 390, 436, 655, 701
BseAI TCCGGA 1 cut(s) 760
BseBI CCWGG 3 cut(s) 395, 513, 774
BseDI CCNNGG 3 cut(s) 393, 660, 726
BseGI GGATG 3 cut(s) 94, 618, 751
BseLI CCNNNNNNNGG 3 cut(s) 171, 245, 907
BseMII CTCAG 2 cut(s) 504, 708
BseNI ACTGG 4 cut(s) 390, 436, 655, 701
BseXI GCAGC 2 cut(s) 53, 86
BseYI CCCAGC 2 cut(s) 64, 602
BshFI GGCC 2 cut(s) 574, 716
BshNI GGYRCC 3 cut(s) 235, 364, 788
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 4 cut(s) 212, 284, 761, 895
BslFI GGGAC 3 cut(s) 361, 582, 884
BslI CCNNNNNNNGG 3 cut(s) 171, 245, 907
BsmAI GTCTC 1 cut(s) 493
BsmFI GGGAC 3 cut(s) 361, 582, 884
BsnI GGCC 2 cut(s) 574, 716
BsoBI CYCGRG 1 cut(s) 291
Bsp13I TCCGGA 1 cut(s) 760
Bsp143I GATC 7 cut(s) 493, 520, 543, 859, 910, 933, 1024
BspACI CCGC 3 cut(s) 77, 344, 1006
BspANI GGCC 2 cut(s) 574, 716
BspCNI CTCAG 2 cut(s) 503, 707
BspEI TCCGGA 1 cut(s) 760
BspLI GGNNCC 8 cut(s) 210, 237, 366, 724, 790, 899, 900, 912
BspMI ACCTGC 1 cut(s) 196
BspPI GGATC 4 cut(s) 488, 905, 918, 1019
BspQI GCTCTTC 1 cut(s) 134
BspT107I GGYRCC 3 cut(s) 235, 364, 788
BsrFI RCCGGY 1 cut(s) 283
BsrI ACTGG 4 cut(s) 390, 436, 655, 701
BssAI RCCGGY 1 cut(s) 283
BssECI CCNNGG 3 cut(s) 393, 660, 726
BssMI GATC 7 cut(s) 493, 520, 543, 859, 910, 933, 1024
BssT1I CCWWGG 1 cut(s) 660
Bst2UI CCWGG 3 cut(s) 395, 513, 774
Bst4CI ACNGT 4 cut(s) 240, 361, 742, 924
Bst6I CTCTTC 2 cut(s) 134, 626
BstC8I GCNNGC 4 cut(s) 27, 146, 983, 1010
BstDEI CTNAG 3 cut(s) 468, 490, 694
BstF5I GGATG 3 cut(s) 94, 618, 751
BstH2I RGCGCY 3 cut(s) 26, 798, 932
BstHHI GCGC 3 cut(s) 25, 797, 931
BstKTI GATC 7 cut(s) 496, 523, 546, 862, 913, 936, 1027
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 7 cut(s) 493, 520, 543, 859, 910, 933, 1024
BstMWI GCNNNNNNNGC 8 cut(s) 80, 184, 193, 202, 571, 613, 881, 926
BstNI CCWGG 3 cut(s) 395, 513, 774
BstNSI RCATGY 1 cut(s) 1022
BstSCI CCNGG 4 cut(s) 393, 511, 772, 894
BstSFI CTRYAG 1 cut(s) 846
BstV1I GCAGC 2 cut(s) 53, 86
BstV2I GAAGAC 1 cut(s) 653
BstX2I RGATCY 3 cut(s) 493, 910, 1024
BstXI CCANNNNNNTGG 1 cut(s) 667
BstYI RGATCY 3 cut(s) 493, 910, 1024
BsuRI GGCC 2 cut(s) 574, 716
BtsCI GGATG 3 cut(s) 94, 618, 751
BtsI GCAGTG 2 cut(s) 51, 222
BtsIMutI CAGTG 6 cut(s) 51, 222, 366, 708, 747, 936
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 4 cut(s) 27, 146, 983, 1010
CfoI GCGC 3 cut(s) 25, 797, 931
Cfr10I RCCGGY 1 cut(s) 283
Cfr13I GGNCC 4 cut(s) 190, 573, 723, 898
Csp6I GTAC 1 cut(s) 789
CviAII CATG 2 cut(s) 814, 1019
CviQI GTAC 1 cut(s) 789
DdeI CTNAG 3 cut(s) 468, 490, 694
DpnI GATC 7 cut(s) 495, 522, 545, 861, 912, 935, 1026
DpnII GATC 7 cut(s) 493, 520, 543, 859, 910, 933, 1024
Eam1104I CTCTTC 2 cut(s) 134, 626
EarI CTCTTC 2 cut(s) 134, 626
Eco130I CCWWGG 1 cut(s) 660
Eco47I GGWCC 3 cut(s) 190, 723, 898
Eco47III AGCGCT 1 cut(s) 24
Eco88I CYCGRG 1 cut(s) 291
EcoO109I RGGNCCY 1 cut(s) 898
EcoRII CCWGG 3 cut(s) 393, 511, 772
EcoT14I CCWWGG 1 cut(s) 660
ErhI CCWWGG 1 cut(s) 660
FaeI CATG 2 cut(s) 817, 1022
FaiI YATR 8 cut(s) 113, 155, 708, 815, 848, 987, 1020, 1030
FaqI GGGAC 3 cut(s) 361, 582, 884
FatI CATG 2 cut(s) 813, 1018
FauI CCCGC 1 cut(s) 337
Fnu4HI GCNGC 2 cut(s) 42, 75
FokI GGATG 3 cut(s) 101, 625, 758
Fsp4HI GCNGC 2 cut(s) 42, 75
FspBI CTAG 2 cut(s) 608, 881
GlaI GCGC 3 cut(s) 24, 796, 930
GluI GCNGC 2 cut(s) 42, 75
GsaI CCCAGC 2 cut(s) 68, 606
HaeII RGCGCY 3 cut(s) 26, 798, 932
HaeIII GGCC 2 cut(s) 574, 716
HapII CCGG 4 cut(s) 212, 284, 761, 895
HhaI GCGC 3 cut(s) 25, 797, 931
Hin1II CATG 2 cut(s) 817, 1022
Hin6I GCGC 3 cut(s) 23, 795, 929
HinP1I GCGC 3 cut(s) 23, 795, 929
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 1 cut(s) 656
HpaII CCGG 4 cut(s) 212, 284, 761, 895
HphI GGTGA 4 cut(s) 393, 553, 691, 793
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 5 cut(s) 442, 493, 697, 727, 910
Hpy188III TCNNGA 2 cut(s) 291, 761
Hpy8I GTNNAC 1 cut(s) 18
Hpy99I CGWCG 2 cut(s) 875, 981
HpyAV CCTTC 5 cut(s) 175, 457, 473, 592, 706
HpyCH4III ACNGT 4 cut(s) 240, 361, 742, 924
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 5 cut(s) 178, 326, 920, 985, 1012
HpyF10VI GCNNNNNNNGC 8 cut(s) 80, 184, 193, 202, 571, 613, 881, 926
HpyF3I CTNAG 3 cut(s) 468, 490, 694
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 2 cut(s) 817, 1022
HspAI GCGC 3 cut(s) 23, 795, 929
KflI GGGWCCC 1 cut(s) 898
Kpn2I TCCGGA 1 cut(s) 760
KpnI GGTACC 1 cut(s) 792
Kzo9I GATC 7 cut(s) 493, 520, 543, 859, 910, 933, 1024
LguI GCTCTTC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 776
Lsp1109I GCAGC 2 cut(s) 53, 86
LweI GCATC 1 cut(s) 603
MaeI CTAG 2 cut(s) 608, 881
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 799
MalI GATC 7 cut(s) 495, 522, 545, 861, 912, 935, 1026
MboI GATC 7 cut(s) 493, 520, 543, 859, 910, 933, 1024
MboII GAAGA 5 cut(s) 151, 515, 643, 658, 681
MflI RGATCY 3 cut(s) 493, 910, 1024
MluCI AATT 5 cut(s) 409, 443, 589, 754, 764
MmeI TCCRAC 1 cut(s) 420
MroI TCCGGA 1 cut(s) 760
MseI TTAA 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 4 cut(s) 212, 284, 761, 895
MspR9I CCNGG 4 cut(s) 395, 513, 774, 896
MvaI CCWGG 3 cut(s) 395, 513, 774
MwoI GCNNNNNNNGC 8 cut(s) 80, 184, 193, 202, 571, 613, 881, 926
NciI CCSGG 1 cut(s) 896
NdeII GATC 7 cut(s) 493, 520, 543, 859, 910, 933, 1024
NlaIII CATG 2 cut(s) 817, 1022
NlaIV GGNNCC 8 cut(s) 210, 237, 366, 724, 790, 899, 900, 912
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 799
NspI RCATGY 1 cut(s) 1022
PaeR7I CTCGAG 1 cut(s) 291
PciI ACATGT 1 cut(s) 1018
PciSI GCTCTTC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 656
PflFI GACNNNGTC 1 cut(s) 975
PkrI GCNGC 2 cut(s) 43, 76
PpuMI RGGWCCY 1 cut(s) 898
PscI ACATGT 1 cut(s) 1018
Psp5II RGGWCCY 1 cut(s) 898
Psp6I CCWGG 3 cut(s) 393, 511, 772
PspFI CCCAGC 2 cut(s) 64, 602
PspGI CCWGG 3 cut(s) 393, 511, 772
PspN4I GGNNCC 8 cut(s) 210, 237, 366, 724, 790, 899, 900, 912
PspPI GGNCC 4 cut(s) 190, 573, 723, 898
PspPPI RGGWCCY 1 cut(s) 898
PsuI RGATCY 3 cut(s) 493, 910, 1024
PsyI GACNNNGTC 1 cut(s) 975
RsaI GTAC 1 cut(s) 790
RsaNI GTAC 1 cut(s) 789
SapI GCTCTTC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 2 cut(s) 42, 75
Sau3AI GATC 7 cut(s) 493, 520, 543, 859, 910, 933, 1024
Sau96I GGNCC 4 cut(s) 190, 573, 723, 898
ScrFI CCNGG 4 cut(s) 395, 513, 774, 896
SfaNI GCATC 1 cut(s) 603
SfcI CTRYAG 1 cut(s) 846
Sfr274I CTCGAG 1 cut(s) 291
SinI GGWCC 3 cut(s) 190, 723, 898
SlaI CTCGAG 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 5 cut(s) 409, 443, 589, 754, 764
SsiI CCGC 3 cut(s) 77, 344, 1006
SspMI CTAG 2 cut(s) 608, 881
StyD4I CCNGG 4 cut(s) 393, 511, 772, 894
StyI CCWWGG 1 cut(s) 660
TaaI ACNGT 4 cut(s) 240, 361, 742, 924
TaiI ACGT 1 cut(s) 13
TaqI TCGA 3 cut(s) 292, 519, 807
TasI AATT 5 cut(s) 409, 443, 589, 754, 764
TfiI GAWTC 1 cut(s) 656
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 6 cut(s) 51, 222, 366, 708, 747, 943
TseFI GTSAC 1 cut(s) 799
TseI GCWGC 2 cut(s) 41, 74
Tsp45I GTSAC 1 cut(s) 799
TspDTI ATGAA 1 cut(s) 675
TspRI CASTG 6 cut(s) 51, 222, 366, 708, 747, 943
Tth111I GACNNNGTC 1 cut(s) 975
VpaK11BI GGWCC 3 cut(s) 190, 723, 898
XapI RAATTY 1 cut(s) 589
XceI RCATGY 1 cut(s) 1022
XhoI CTCGAG 1 cut(s) 291
XspI CTAG 2 cut(s) 608, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.